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LotjaGi1g1v0065200.2

Overview

Field Value
Gene ID LotjaGi1g1v0065200
Transcript ID LotjaGi1g1v0065200.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3RK69|A0A0S3RK69_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:9011888..9017043) extracted from Lotus japonicus Gifu genome v1.2.

ATTTCTATGGGTCTATCATTTGTAACACTAATCTTACAATGAGTGAAGCACTTAAGTAGTTTTTATCACTCCTCCCTGAT GATGAGAGAGTGAGAAAGCTAAGCTAGGCAACAATACATGGTACACATGAACAGTAGACATGAGCAGTGAGTGGTATAGT GCATAGACCTAGGTATTGAGTTTCCGTAGCATCCATCTTTCCTTGGGAAGGAAAACTCTCAGTTAAGTTGCAGACACACA CGTTAACCCTCTCTGTCTCCACCTGCCATTAATACTCAGCTTCACTGCTTGTGTTGTGTTGTTGATGTTTGAGAGAGAGA GAGAACAAGCCAGCCACTGTTCATGTACACATTTTCAAGGGAGAAAGAGGAGGACACTGCATCTGAAACCTGCTGCATCT GATTCCCACCTTTTTCAGTCTATAGAGAAGAGACCAACAACCCAAAAATCCCTATTGTTCTGACTGTTTACAATCTCTTT GGAGTTTTCTTCTCACATTTTTTCACCTTCAATTCCGGGAGTGAGTACTCTCTGGAGGACAATTATATCTTATGCAGTCT TCTTTTTCACAAACAGTCACTGAGTGAGATAGGTACTAGCATTTTATTTTATATATTTTATATTTTATAAAGTTTTATTT TTATATAGAAAGAGAGAGAGAGAGTATGTGTGTTTTTCTTGACTTCAGTTTGAAACTATGATAGGGTTTGGAGGTAACAG TTGCAGTGGTGTTTCTTCCTCTATGGACATGATGAACATGGAAACTAATAGGAAGTTCCTTTCTCTGCCTCTGAGCAACA ACAGCAACAACAATTCTGGTCCCCAGATGAGAAGGGTACCTGTTGTCATGAGCAATGCTCAAGATCATAACTACAGCAGC CAGCAACAGCAGGACCACAACACTAGCAGTAGTGTGAGGGACAAGATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTC CTCTTACCTTAATTGCCTCAAGGTGATATAAACTTTTACACATATCAGCTTTCCCTTTCTTCCCAAGAGATGTTGTCCAT GTGATCCATGCACTCTTTTAACATGGAAGCTTAAACACTTACTAAATGATTGGTAGACATTTGCATAGTGCAGTGCAGTG GAGACACCAAACAATCACTCAAGCACGAAAGAAATATAAAAGGGAAATAATAAATGTGATATAAGCTGGATGAGTGTGAT AAGAAGAGAGACAAGGAGAAAAATAGAGTATCTGTGTGGTTGTTGGGTGTCTCTGCGCTGTTTGGTTGTCATGTCTGAGT ATATACGATGGAAAAACCATGCTTATTTCTCTTTCATTGGTTTTTCCATGGGAATAGAAGCTTTTGAGTTAAGATCCTAG AAATGTGAATTTTTTTATGCTGTATAGATCTTGTTTACTTTCATGTTTTTTTTTTTTTTGCTTGTTTCAATGGTGAGACT TGGGTATTTACAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGTTTAGAGGAATCATGTGCCAAATGTGAGTCCTTGAATG CATCTGGAAGGACAGGAGGTGGTTCCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTC ATCAAGTATGAGCATGAGCTCACAAAACCCTTCAAGGAAGCCATGCTTTTCTTTTCAAGGATTGAGTGTCAGCTCAAAGC TCTAGCAGTTTCAACAGAGTTTGGTGATTATTAATACACTTAAAACATTCATTACTTGTTCCTGAACTTCTCTGACTGTG GAGCAGTCATGGAAGGTTTTCTTGTTTGGGGAAGTGGGTGCGGGTGAGATACCAAGTGTGTCAGTGTGTGTGTGAGAACT TAGTAATTCATTGTGTGACCAATGGGAGAGAAAAATCAGTAACTACAAACTAGCTGCATGACAGTCATGGATGGTTGTTT TACCACTGTCAAAAGACCTAGAATTTAACCCTTTTGTTGAAATCTTTTGGCTAGAGGCTACCTGCATGTTTAGAAACTCT TACATAATTGAAACTGAAGTCATAATATATATGTTTGGAAACTCGTTTAAAAATCATGATTAAGCTGAAATCATGGTAGA TAGAAACAACTTACCTCGGCTATTGCTCCACCATGATTTTACATTCTCTGTGGTTTTAAAATGAGTTTCCAAACATGCAC TTAATTATTGGACGAAGGTTCTTGATTCTAGAATTGATTTTGAGAAAAGAGAAGTTGATCCAAACACGGTATAAGTGTAT GTTTGGAAACTCTTATGAACTAGCTTCTAGTTCTAAAATTGATTTTGAGTAAAGAGAAGGTCATCCAAACATGTTATAAA TAAGCAAATGAGATCATGGTCAAGTTTATATATGTCTTTAGACTAGTAGTAGTTCTCCTGTGTCTCAATGTCTTTTATAA CCCTTTTGGAAATTAACTGCAAACCTTGAAAGGGTCACTTTGTAGTTACTATTAATAGATCTTTAGTAGATAATGTCCTT CACAAGCTTAATATTGGTATTCAATATTAATTGGTAGAGTACACGACTGAGGGCCCAATTAATATTATAAAAGATGATTG CACATTCATCTCCTGGACAAGTGTGATATATATCTTTGATGATAAAGATGATTTGATTACAGTATATGTTTAGTTATATG AATATCTTCAGAATAAGTTCAGAGCCCACTCAGATGGCCCTTCTTATCTATAAAAGGTGTGATTAGAGTTTAAAGGATAT TGATTGAAAAACTTAAACAGTAATTATTTGTAAGATTGTATAATAGATGGGCCCAACGTGTTTGAACTAGGTCAAAAAGT TTGATAATGATATTATAGTGCTTGATGGGAATTCAAGAAAGTGAGATTTTTGCAATATCATTTGAATGATGAAAAGTTTA TTCGAGCCTAATGCATCCTAATTTACTGACCATCAATAATCTAATGGCTTTCCAGATATTTTGAATGGATTCTTATTTTT ATTTTCATGTGGCCTTGGTTCTGCTTGCACCATTGTTTCACACATATCCATGTGTTGTCATCACTTGCAAGGCAATAGTC CTTCTTTCTTCTGTACATATAATTTCTTCACCTTTTTAGGTGCATGGCTCTTTGTCACTGTTTCAAGAACTTGGTAGCAA AAGGAAACTGCTTGTCTTGTTTTCTTTTGTCAATTTTAATTTCCCTGCCAGTTTGTTCCCTCTCAAACCTCTTTTTATAG GTTTTCTACTGGGTGAGGAAGGGGTCACATATTAAGTACATGTATTAGCTAATTCATTTGGTAACTGTATTTTCAAATTA AAAAGTACTTTTGTCATGATAGTTGATGATGATATATGAAATTTTCTACATGGCTAGATACATTTGGTATCAAACCATGT ATTTACTCATTTGGTATTTCGGAAAAAAAATTCACCATTGATTCTTTTTATAATTGATTCTGAAGCTAAAATTGGTGCAT GTTTGGAAACGGTAACGTCAAAATCATGCTTGACAGAAGTAAAACATGCTTTTGTCTTCAGCATGGTTTTAAAACTAATA TGCAAACATGTACTTAATGAGTTTCATGTTGTTCTAGTTACTAGTGATGTGTTAAATGTTAAGTAATCTTGGCTGCATAT GTGATATTGTAAATCATGCTACTTTAGCTTGTGTGCATAAATTACTTTTATTGATAGTTTCATGTTGTTGTGGTGATTTG AAGGTCAAAGTGAATCATCTTCTCAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACACAAGCTGATGATAGGGAA CTAAAAGTTCAACTTCTGCGCAAGTATAGCGGTTACCTCGGCAGCCTCAAGAAGGAGTTTCTGAAGAAGAAAAAGAATGG AAAGTTGCCAAAGGAAGCTAGGCAGCAGCTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGTAACTA AGTTTTATTACATCCATCATAAATCATATGCATATAATGTATGCTATATTGACAGTGCACACACAATCCAAAGCATAATA ACTTCATTAGTTACGCTTTATAAAACATGTTTGGATCAGATTTTCTTTCATCAATATCAACTTTGAAACCAGAAGCTACT TATTGGAGCTTCAAACCGGAATTGATTCTTTAATTTACAATAGTGATTGTGAGGCTCCCAACTTTAGAACCAACCAAAAG TTCATATATACCATGTTTCTGCAATTTATCATAGTATATATCTTTGACATGTTATAATGTCCATATTTAATTTGCGGCCA AGACTATGATCGACCATGTTAAAATATGTTCGGTCCACCCATGAGCCATGTTTTTACTACTAACATTCATCACTACATAT TATTTCCAAGATGCTCCTTATATGCTACAATTAATTTGCACGGAAGTTCTGTCAACTTGTAAACTAGATTTTTCTTAAAC CACGGTAGACCAAACATTTTCCAAACTATAGACATTTGAGCATGGTTCTAATTAGAAAATGCATTCACTTATAATTCTAT AATTGATGGTATTGTAGAATAATCCTGGTCATCTGAATAATGGAACTTTAATTTAATTTCATATGTTGGTTTTAGATGCT AATATTTTCTCATGTTAACTTGGGATTGGGGTGAACATGTTTGTAGGAATCTCAAAAGCAAGCACTTGCAGAATCCACTG GATTGGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTT GCTGTGATGGATGCAACTAACTACTATATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGCCATGCCAATGCTTCT TTAATTCCATTTTACATATCCTCTCCCAAGCTAAAATACTCTTATCTGAACCTTGTTTTGTATTATATAGAGCTCTGTCA AAACCCTATCTATTTTCAAGTTGTAGCCTAGCATGCATGGTTATAATGCATGTTTTAGTTTAAGGCAGGGTCAAAATCCA TGCTTATCTCTGAACTGCTTCGGAGGAGTGAGTATGAAGCTAAATAGCTAATCATGCTATGTATTATCTACGTACACTTT TTTTGATTATTGCGGATGTTGTGTTATATATTTTTTATAATTTTCATGTATTAAAAAATACCAGGTTTATTTATTGGGTA ATGACGAACTTATATTTTTACTACGTTAATTAATTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0065200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGGGTTTGGAGGTAACAGTTGCAGTGGTGTTTCTTCCTCTATGGACATGATGAACATGGAAACTAATAGGAAGTT CCTTTCTCTGCCTCTGAGCAACAACAGCAACAACAATTCTGGTCCCCAGATGAGAAGGGTACCTGTTGTCATGAGCAATG CTCAAGATCATAACTACAGCAGCCAGCAACAGCAGGACCACAACACTAGCAGTAGTGTGAGGGACAAGATCATGGCTCAT CCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGTTTAGA GGAATCATGTGCCAAATGTGAGTCCTTGAATGCATCTGGAAGGACAGGAGGTGGTTCCTTAGGTGAAGATCCAGCTCTGG ATCAGTTCATGGAGGCTTATTGTGAGATGCTCATCAAGTATGAGCATGAGCTCACAAAACCCTTCAAGGAAGCCATGCTT TTCTTTTCAAGGATTGAGTGTCAGCTCAAAGCTCTAGCAGTTTCAACAGAGTTTGGTCAAAGTGAATCATCTTCTCAGAA TGAGGTTGATGTGCATGAAAACAACCTAGACACACAAGCTGATGATAGGGAACTAAAAGTTCAACTTCTGCGCAAGTATA GCGGTTACCTCGGCAGCCTCAAGAAGGAGTTTCTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAGGCAGCAG CTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCTCAAAAGCAAGCACTTGCAGAATCCACTGG ATTGGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTG CTGTGATGGATGCAACTAACTACTATATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGCCATGCCAATGCTTCTT TAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0065200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGFGGNSCSGVSSSMDMMNMETNRKFLSLPLSNNSNNNSGPQMRRVPVVMSNAQDHNYSSQQQQDHNTSSSVRDKIMAH PLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESLNASGRTGGGSLGEDPALDQFMEAYCEMLIKYEHELTKPFKEAML FFSRIECQLKALAVSTEFGQSESSSQNEVDVHENNLDTQADDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQ LLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11850
13 320 308 8.9E-152 –
PANTHER
PTHR11850:SF263
13 320 308 8.9E-152 –
SMART
SM01255
71 115 45 8.6E-15
IPR005540
Pfam
PF03790
73 113 41 4.3E-19
IPR005540
SMART
SM01256
123 174 52 1.1E-24
IPR005541
Pfam
PF03791
127 172 46 5.3E-21
IPR005541
SMART
SM01188
204 225 22 7.1E-7
IPR005539
ProSiteProfiles
PS51213
204 224 21 11.139
IPR005539
Pfam
PF03789
204 225 22 1.3E-9
IPR005539
Gene3D
G3DSA:1.10.10.60
222 296 75 4.2E-23 –
ProSiteProfiles
PS50071
224 287 64 12.228
IPR001356
SMART
SM00389
226 291 66 2.8E-12
IPR001356
SUPERFAMILY
SSF46689
226 298 73 2.1E-19
IPR009057
CDD
cd00086
236 288 53 4.63759E-13
IPR001356
Pfam
PF05920
244 283 40 3.4E-17
IPR008422
ProSitePatterns
PS00027
262 285 24 -
IPR017970

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0065200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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