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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0088400 |
| Transcript ID | LotjaGi1g1v0088400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G59550.2 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF2; TrEMBL-Plants: tr|I1JI05|I1JI05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12848131..12850311) extracted from Lotus japonicus Gifu genome v1.2.
GAAACAACACCCTCAACGACACAAGGAGGTGTCGTTTCATCCAACATCCCACCACGTGTCACGTAACCAAACACATTACA AGGACAACGTTTGTTTTGTTGTTATCTCCCTCTTCCCGACAACAACAACACAAACCTGTCATCACCTCCATTTCTCTTCC CCACAATGTCCCACCGGATTCAATTCACCATCTTCTCTAACCTTCCATTGCAAGATTCTCTTCTCAAACTCCACAAATCC ATTCTTCCAAATTAGCCTTTTCTTTATTCATTGTAGATGTCTTCTTCACATTGGTGTCACCGGTGCAACCGTTTCGTCAG AATATGGCGGAGGCAGGGGATACCGGTATGTCCCGATTGCGACAGCGGCTTCGTCGAGGAGGTTGAAAATCACACCAACA GCCGGCGCCGGAGGGTACCTCCGGCGGCGGTAACCATGCACCACCGCTCCGATCAGAATTCACGTCCGAATCACCGGTGG AACTGCAGAAACTTCTCCGGCGAACGGTCACAGTTTAATCCGGTCATCATGCTCCGGAGAGGCGAGTCCTCCACGAGCCG CGGCGGGTTTGAGTTTTTCTACGACGACGGCTCTGGCTCCGGGCTGCGGCCATTGCCTCAGAGGATGTCGGAGATTCTTC TGGGCTCTGGATTCGATAGGGTGATGGAGCAGCTCTATCACGTTGAAACTGGGAGACACGGGCATCATCACCACAGCCAT CACCAAAACTTTCCGGCGTCAAAAGCCGCCGTGGATTCCTGGCCGGAGATTGAGATCAACGAGAGCCATATTTCCACGGA GTCACACTGCGCGGTTTGCAAGGAGCCTTTTGAGATTGGCATCGCCGTGAAGGAAATGCCATGCAAACATGTTTACCATT CTGATTGTATCCTCCCCTGGCTCGCAATTCGCAATTCATGCCCTGTTTGTCGCCAAGAACTGCCGTCAGAATCGAACGCC GCCGCACTCGTTGATCAGGACCAGGTTCCAGAGGGGTTAACGATATGGAGATTACCGGGTGGTGGGTTCATGGTGGGAAC GTATGCCGGAGGAAGCAGAGGTGGCACATGGAGGGAGCTTCCGGTTGTTTTCACAGAGGTGGATGGTGGGTTCAACAATG GCGTTGAAGTTGAGCCAAGGAGGGTATCTTGGTCATTGTCATCTTCTAGACGGAGGGGAAACGGTGGCGATGGTGGTGGT AGTGGTGGTGGTGGATTGAGGAGAATGTTGAACACCATGTTTCGTTGCTTGAGAAATGGAGTTAGGACTCGGCGTGCTGT TTCCTCTGTTCCTGCTAGAGAGGATTCTAGTTCTAGAGTACCTGTGACTGTGAGGAGCAATAGTGTGTCTCGTGCGAATG TGGAACCTTCAATTCCCTCTCCACGTTCGAGGAGGACTTGGTCTATGGATGTGAATAGTGGAACGAGAGCATGGTGATGG AAATTCAAGTGGGGATGGGTTGAAAATTGAACTTTGTTTCTGGGTTCTGCTGTGGGGGGAAGGGGATGGAAGATTTCATA GTGGGGCAGAGTGGAAGATGCAATGCAATGACAGATTGTTTGGTGAATTCTGAGAGCGATTATGAGTCCGTTTGGATGTG GACCAAAGAGCACTTATTTTAGCTTATCGGCTACTTTTTTATGTATAGAAGTTCTTGTAAGTGTTTTTTACCGCGCATTC GAAAGGGATGGCTACTGTTAAAACTCTCAGAAGCAATTAATGGCAGCAGCATCAGTGGAGAAATGGAGGTGAAAGGAGCC TATTTGTGAATATTTTGGGGGACAAGAACATTGGTAACCTTAGTGGGTTTGATAATAAAATGATGTGAACAATCTTCATA TTGTTCATTTCATGATTTTTCCTCCCAAGATTTGTAAAGTTTAATTGGCTTCACTTTGATCTTTCAAATTCTGTGTAATT TGTAAATGTTTTGTTGTTGTAAATGTTTTCCTCAAAATATTTGAGGTATTATTGTCAATATCTATATATATTTTGTCAAA ATATACAACGTGAGGGGTATTATTGTCATTTTGTAAATCATACACATGTTCTAATGGTTTTCTTCCTGATTTGGGAGGAA TACATTTTATGTGGGTTCACCCCCTTTTTATCATTCCTTCCAGCTTTTGAGATGAACCAAATGAAGGAAAGGATTTTAAA ATGCGTGTTTTTTTTCTGCCT
CDS sequence (LotjaGi1g1v0088400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTTCACATTGGTGTCACCGGTGCAACCGTTTCGTCAGAATATGGCGGAGGCAGGGGATACCGGTATGTCCCGA TTGCGACAGCGGCTTCGTCGAGGAGGTTGAAAATCACACCAACAGCCGGCGCCGGAGGGTACCTCCGGCGGCGGTAACCA TGCACCACCGCTCCGATCAGAATTCACGTCCGAATCACCGGTGGAACTGCAGAAACTTCTCCGGCGAACGGTCACAGTTT AATCCGGTCATCATGCTCCGGAGAGGCGAGTCCTCCACGAGCCGCGGCGGGTTTGAGTTTTTCTACGACGACGGCTCTGG CTCCGGGCTGCGGCCATTGCCTCAGAGGATGTCGGAGATTCTTCTGGGCTCTGGATTCGATAGGGTGATGGAGCAGCTCT ATCACGTTGAAACTGGGAGACACGGGCATCATCACCACAGCCATCACCAAAACTTTCCGGCGTCAAAAGCCGCCGTGGAT TCCTGGCCGGAGATTGAGATCAACGAGAGCCATATTTCCACGGAGTCACACTGCGCGGTTTGCAAGGAGCCTTTTGAGAT TGGCATCGCCGTGAAGGAAATGCCATGCAAACATGTTTACCATTCTGATTGTATCCTCCCCTGGCTCGCAATTCGCAATT CATGCCCTGTTTGTCGCCAAGAACTGCCGTCAGAATCGAACGCCGCCGCACTCGTTGATCAGGACCAGGTTCCAGAGGGG TTAACGATATGGAGATTACCGGGTGGTGGGTTCATGGTGGGAACGTATGCCGGAGGAAGCAGAGGTGGCACATGGAGGGA GCTTCCGGTTGTTTTCACAGAGGTGGATGGTGGGTTCAACAATGGCGTTGAAGTTGAGCCAAGGAGGGTATCTTGGTCAT TGTCATCTTCTAGACGGAGGGGAAACGGTGGCGATGGTGGTGGTAGTGGTGGTGGTGGATTGAGGAGAATGTTGAACACC ATGTTTCGTTGCTTGAGAAATGGAGTTAGGACTCGGCGTGCTGTTTCCTCTGTTCCTGCTAGAGAGGATTCTAGTTCTAG AGTACCTGTGACTGTGAGGAGCAATAGTGTGTCTCGTGCGAATGTGGAACCTTCAATTCCCTCTCCACGTTCGAGGAGGA CTTGGTCTATGGATGTGAATAGTGGAACGAGAGCATGGTGA
Protein sequence (LotjaGi1g1v0088400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSHWCHRCNRFVRIWRRQGIPVCPDCDSGFVEEVENHTNSRRRRVPPAAVTMHHRSDQNSRPNHRWNCRNFSGERSQF NPVIMLRRGESSTSRGGFEFFYDDGSGSGLRPLPQRMSEILLGSGFDRVMEQLYHVETGRHGHHHHSHHQNFPASKAAVD SWPEIEINESHISTESHCAVCKEPFEIGIAVKEMPCKHVYHSDCILPWLAIRNSCPVCRQELPSESNAAALVDQDQVPEG LTIWRLPGGGFMVGTYAGGSRGGTWRELPVVFTEVDGGFNNGVEVEPRRVSWSLSSSRRRGNGGDGGGSGGGGLRRMLNT MFRCLRNGVRTRRAVSSVPAREDSSSRVPVTVRSNSVSRANVEPSIPSPRSRRTWSMDVNSGTRAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 313 | 311 | 2.4E-113 | – | |
| PANTHER | 3 | 313 | 311 | 2.4E-113 | – | |
| Pfam | 4 | 35 | 32 | 3.0E-13 | ||
| Gene3D | 138 | 225 | 88 | 4.9E-19 | ||
| SUPERFAMILY | 158 | 224 | 67 | 3.26E-19 | – | |
| Pfam | 177 | 219 | 43 | 5.8E-11 | ||
| SMART | 178 | 218 | 41 | 1.3E-6 | ||
| ProSiteProfiles | 178 | 219 | 42 | 12.165 | ||
| CDD | 178 | 219 | 42 | 2.91467E-21 | – | |
| Pfam | 240 | 358 | 119 | 2.7E-26 | ||
| MobiDBLite | 291 | 314 | 24 | - | – | |
| MobiDBLite | 333 | 386 | 54 | - | – | |
| MobiDBLite | 338 | 386 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi1g1v0088400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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