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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0096100 |
| Transcript ID | LotjaGi1g1v0096100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14571761..14577342) extracted from Lotus japonicus Gifu genome v1.2.
TTGGAGTTTGGATTTTTTCGCGGTCTTCCAGAGAATCTCTTCATACTGGACATCATTGGGCAGATAGCTTTTCTTGTGGA CATTGTTTTGCGTTTCTTTGTTGCTTACAGAGACGACCAAACCTATCGTATGGTCTACAAGCGAACCCCTATTGCTCTGC GGTAAATTTCTTCCCTTTATTTCATTCCCTCCTCCCTAATGATGATCTTATTCTTGCCATGATTCAAATGCTTATTATTC TAGATGTACTTGTATGGCTTTTGGGAATATCTGCAATTGTTTACAAATATTTTATTGGTTTCTGCTGAAATGGCACATAT GTCAGCGTATTGACTTGACTTGGGTATAAAGTGCATCTTTGGAAATCCATCTACAATTGATTCGAAAGTCAAAATGAATT ATGTTGACAAGCTTATGTTAGTAGCTTCTGTGTGTTAGAAATGATTATGAGCAAAGAGAAGCGGATACAAGCATGCATAT GTTATGTATATAATTTTTTATTTTTAATTGATTTGTGGCTTACTTCTTTCACTTCATGCAGGTATCTAAAATCTGGCTTT ATCTTTGATTTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGGTTCTACTTCTTCTAGATAAACCCAAATTTATTGA GTACACCCTCCGGTCACTATTATAAGCAAAAGTTTGCTTTTAGATTCATTCAATAAATGATGTATGTGACCATTTTAATG ACCACATACATCATTTATTGAATGAATATAAAAAGGTAACTTTTGCTTATAATAGTGACCGGAGGGTGTACCTGTATTGC CTACCCTGAAGAATTGTTTTGATAGTCTATAGCTTCTGTTTCTAAACATCGTTTAAAATTTGTTACTTTCCTGCTTAATC CAACTATCTAATAGATCCTGTAATTGCACTGCTTATGTGTAGAGTGTAGACTAATGTTGGCTGTGGCCTGTGGTTTTGGG ACACAGCCTGTTGAGAGTTGAGACGAAGATAGGCAAATGTTACAGTAACATGTTAACAGCTTTTAGCAATTTCTTTATCA TTGAAAGTTTCTAGTTCATGGTTCTTACTCTAACCACTAGGATAACCTTTCAACAGGCTTGTGGACGCAGAGAGGGAGTG AGGTATCTTTTGTGGATCAGATTATTTAGGGCGCAGAAAGTCGTGGATTTTTTATACAATATGGAGAAGGATATACGCAT CAATTACATAATTACTCGGATTGTGAAACTCTTAGTGGTTGAACTCTACTGCACCCACACAGCAGCTTGCATTTTCTACT ATTTGGCTACTACACTACCTGAATCTCAAGAGGGGTACACATGGATAGGAAGCTTAAAACTTGGTGATTATAGTTATTCA AAGTTCAGAGAAATTGATCTATGGAAGCGCTACACGACATCCTTATACTTTGCTATTGTTACAATGGCTACTGTTGGTAA GTTTTTGATATTTAATTTACAGAGGAAAGGTGAATTTTCATTTTGTTGGTAGTTATTGTAAGTTGTAACTCTGCCTATGC TATAGTTTGTTGCCAATATTTACATAGCCGGTAGCCAACTTAAATTTGACAAATCTTCTAGTAATGGATCAATGAGTCTT CATCTACCACTGGATAAAAACAATAGTTCGATTAAAGGATTAGAGGAAGACATAAGATTTTTTTTTGGAGAAACTATTGA AGATTTTAGTCTAAAATGGATTTAGTGAAAATTTGGTTGGTGTTAGAGCCTAATTGGATGTTTACTCGCTGCAACCAACT CTACCTAGTAGGATAAGTCTTAATTGTTTTTTTTTTGTCGTTTGTAATGACAGAATTCTAATGATAAACATGTCATAGTC GCTTGAGATTCAATCCTTTGAAAAATACATTTTGTGAACCTTAGTTCATATTCATTTCTGAAACATTTGTTACCATGTCA GTACATGTTAGAAGTTTGACATGGTTAGTAATGTATGAATGAACTGATAGTTGTCAGAACCTCTTCTATGAGTTTCTGGA CTCATCGATCATATTTGGTAGTAAATGTTATTATTGTTTAGAGTTTAGACCTTCTAGACTCATATTTTTTTTCCCAAAGA TCTATATAATTTTAGATTGCTTTCCAAATTGTGTACTATATCTTTTCTCTTTTGAAGCTCTTCTGAATGAATAATCTTTG TTACTTTCTTTTTGTGTCACAGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATATATGT TTCATTTGACATGATTCTTGGTGCTTACTTGATTGGTAACATGACAGCTTTGATTGTCAAGGGATCAAAGACTGAAAAGT ATAGGGACAGGATGACAGATATTTTGAGATATATGAACAGAAATAGACTAGGAAGGGATGTCCGTGAACAAATTAAAGGC CATGTGCGCTTACAGTTCGAGAGCAGATATACTGATTCTGCTCTCCTTCATGAAATCCCCATGTCTATTCGAGCTAAGGT AAAAAAGAGAGAAGGGTTTGAACCTCATTTATTGTCTCAGTTGAAAAATTCATCATCGTATTTTAGGTATTCTGCTTTTG TAGTTATTTTGTAACGGTCTAATTACCTTTTGCAGATATCCCAAACATTGTATTTGCCTTACATTGAAAAGGTTTATCTT TTTAAAGGCTGCTCTTCAGAATTCATCAATCAGATTGTAAGTAATAACTTTCCCATTGCCTAGCATATCAATGTGAAATG GTATTAATATTAACAGTATTTTAGATCTGCAAAGCTATCTTTTCCTTTTAGGATTTGATCTATATTCTACAGATTACAAG TAATTTATGTTCCCTTGATCTTTTCAGGTAATTAAGCTCCATGAGGAATTCTTTCTTCCGGGGGAAGTTATAATGGAACA AGGAAATGCTGTAGATCAACTATATTTTGTCTGTCATGGTCTACTGGTATGATTTTTTATTTTCGCAACCACTTATGCTA TTATTCAATTTCTATTCTTTACTCCTTCCAGGTTTTTGATATTTTTAGTTATAGCTAGTGACTAATTCGAATTATAAACA TGCTGGTATTATACCTTTTAACACCTGTGACTTGCTGTGTGTTACACTGCTAAATTTCCTTACTTCTTTATGCTATATTC CTTTAAGAAAAACTATTTACTAGAACAGAAGCTCTCAGAATCTAATAAATGTGCTTCATTTTATCTTCAGTAGGTCATAA AATAGTATGAATTCTAGAACTGCTTTGAAATTTATCCATATAAGATAATTTTACTTTTTTTATTGAATGCGGGAAGCTAT TTCTATGCAGGAGGAAGTAGGCATAGGTGAAGATGGGACTGAAGAAACTGCTACACTTCTACAACCTCACTGTTCATTTG GAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGCGTCTGTGAACTGTGCAGGGTCCTGAGGCTTGAT AAACAATCATTTACAAACATCTTAGATATATATTTCTATGATGGAAAGAAAGTAATGGGCAACCTTTTAGAGGTAATAAT GTTATCCTCCCTTTAGTTGAGTATGTGACCTGAAATAAAAATGCATCATGTTTCTCTGTAGTTGAACATGGCAAGGCATG GATGCAACAAGCTACACATTTTAGGATTATATAATCATGAGACAACTAAATACTTCATGTTTTGTAGGGAAAAGAGTCTC TTCGAGGCAAGCAATTGGAGTCGGACATCACGTTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAATAGA GCAGCTTTTGATGGGGATCTGTATCAGCTAAAAGGTTTGATTCGAGCAGGAGCTGATCCTAACAAGACAGATTATGATGG AAGATCACCTTTGGTGAGGAGCTTGAAACTTCTTAAGATTTCTTTCTTTCAATCAATTTATTTCTCTTCATCTATAAAGT TGCAAGTAATTAACAGTTATGCTTTAAATAAGGGTTCTGTTATGAAAATGCTTGCCTGATTTTTTTTGTTTTCCCCAATA GCATCTTGCGGCATCTAGAGGATATGAAGATGTCACACTTTTCCTTATTCAAGAAGGTGTAGACGTCAACATCAAAGGTA ATTGCCTAGCTAAGAGTCCGTTTGATTGCGGACCAAAAAAAAAATATTGGAGGTTATCTAGAAGCTCCAATAAGCCCTCG TTGGTCTGTATCCAAACGCGCTCTAAATATTCATTGTTACGGGACATTTTAAATTTTAGCTGACACAAACATCATTTATG TGGTAATTTTATAGATAACTTTGGGAACACGCCCTTACTGGAAGCAGTTAAGAATGGGCATGATCCGGTTGCTTCTTTAC TTGTAAGAGAAGGGGCCGCGATGAATATAGAAAACGCTGGTAGTTTTTTATGTACAGCCGTTGCAAGGGGAGATTCAGAT TATCTTAAAAGGCTTCTATCTAATGGGATGGATCCAAACTTGAAAGACTATGATTACCGAACCCCACTTCATGTTGCAGC AGCTGAAGGTTTATACTTCATGACAAAGTTGCTCTTAGAAGCCGGTGCCAGCGTTTTTATCAAAGACAGGTACTGTTTCA TTACTCATTTTACATGTTCATGCTGAGATCACTAGTGTCTTCAAGTAGGAACCTTTTCATCCTTGTTTTCACCATTGAAG TATAATGTTTCTCTCTCCGTTTTCCATGTTGTCCCTGATTTCAAATATGAACTGAACTCTTAAGAATACAATATCTATTT GTTGTTTCTTTCCTTTTCATATTATGTACTCTAAAGTCAGAGCCATAACTTCTTTCTATCTGCAAAACAGATGGGGAAAT ACTCCTCTTGATGAAGCTCGGATGTGTGGAAATAAGAATCTGATCAAGCTATTGGAAGATGCAAAATCAGCTCATTTGTC AGAATTCCCATGTTCCCCTCATGAATTACTAGGTACTGACATGCTGCAATAGCCTTCTTTTAGTTTAGTAGGAAATGCAA TAGAATTAGAATAGGCTATATATCAATATACAGAGAGTATCTCTTAATCTACTCCTTTTCTCATCTCTCTAGTCATCTTC TCTCTTCTCACTTTTGTCAACATGCGCCAAATTTTGTTTTCTCTTCATGTTAAATTTTAAACTAAATATTAAAATTAGTC CCTAAAAGATAGTTTTGGTCATATTAGTGTTGAATGTTAGAAGATACTCCTATAGGATATTGTCTCTTGATGTTTAAGCA ACTATATAAATGGTTTGCATCTAGCTCCACCACTTGCATCTAAAACTAGCAAGTGTAAAAATAAATTTCCAATGTGATTT GCACTTCCTTTTGTTATGTCTGCTAACTCAAATGTTAATTTGACCTACCATTTTCAGATAAAAAGCATCCAAGAAGTTGC ACAGTGTTCCCTTTCCACCCGTGGGATCCAAAAGAACATAGAAAAAATGGAATTGTGTTATGGGTTCCGCAGACCATTGA AGAGCTAATCAAAGCAGCAGCAGCAGATCATATAGAATTTTCTTGTGATTCTTGTATTTTATCAGAAGACGCTGGTAAAA TTACTGATGTGAACATGATTAAGGATGGTCAGAAGCTGTATTTAGTCCATGAAACGCATTAG
CDS sequence (LotjaGi1g1v0096100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTACAAGCGAACCCCTATTGCTCTGCGGTATCTAAAATCTGGCTTTATCTTTGATTTTCTTGGATGTATGCCCTG GGACCTCATCTACAAGGCTTGTGGACGCAGAGAGGGAGTGAGGTATCTTTTGTGGATCAGATTATTTAGGGCGCAGAAAG TCGTGGATTTTTTATACAATATGGAGAAGGATATACGCATCAATTACATAATTACTCGGATTGTGAAACTCTTAGTGGTT GAACTCTACTGCACCCACACAGCAGCTTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCTCAAGAGGGGTACAC ATGGATAGGAAGCTTAAAACTTGGTGATTATAGTTATTCAAAGTTCAGAGAAATTGATCTATGGAAGCGCTACACGACAT CCTTATACTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTC ATAATGATATATGTTTCATTTGACATGATTCTTGGTGCTTACTTGATTGGTAACATGACAGCTTTGATTGTCAAGGGATC AAAGACTGAAAAGTATAGGGACAGGATGACAGATATTTTGAGATATATGAACAGAAATAGACTAGGAAGGGATGTCCGTG AACAAATTAAAGGCCATGTGCGCTTACAGTTCGAGAGCAGATATACTGATTCTGCTCTCCTTCATGAAATCCCCATGTCT ATTCGAGCTAAGATATCCCAAACATTGTATTTGCCTTACATTGAAAAGGTTTATCTTTTTAAAGGCTGCTCTTCAGAATT CATCAATCAGATTGTAATTAAGCTCCATGAGGAATTCTTTCTTCCGGGGGAAGTTATAATGGAACAAGGAAATGCTGTAG ATCAACTATATTTTGTCTGTCATGGTCTACTGGAGGAAGTAGGCATAGGTGAAGATGGGACTGAAGAAACTGCTACACTT CTACAACCTCACTGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGCGTCTGTGAACT GTGCAGGGTCCTGAGGCTTGATAAACAATCATTTACAAACATCTTAGATATATATTTCTATGATGGAAAGAAAGTAATGG GCAACCTTTTAGAGGGAAAAGAGTCTCTTCGAGGCAAGCAATTGGAGTCGGACATCACGTTTCATATTGGAAAGCTAGAA TCTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTGATGGGGATCTGTATCAGCTAAAAGGTTTGATTCGAGCAGGAGC TGATCCTAACAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCGGCATCTAGAGGATATGAAGATGTCACACTTT TCCTTATTCAAGAAGGTGTAGACGTCAACATCAAAGATAACTTTGGGAACACGCCCTTACTGGAAGCAGTTAAGAATGGG CATGATCCGGTTGCTTCTTTACTTGTAAGAGAAGGGGCCGCGATGAATATAGAAAACGCTGGTAGTTTTTTATGTACAGC CGTTGCAAGGGGAGATTCAGATTATCTTAAAAGGCTTCTATCTAATGGGATGGATCCAAACTTGAAAGACTATGATTACC GAACCCCACTTCATGTTGCAGCAGCTGAAGGTTTATACTTCATGACAAAGTTGCTCTTAGAAGCCGGTGCCAGCGTTTTT ATCAAAGACAGATGGGGAAATACTCCTCTTGATGAAGCTCGGATGTGTGGAAATAAGAATCTGATCAAGCTATTGGAAGA TGCAAAATCAGCTCATTTGTCAGAATTCCCATGTTCCCCTCATGAATTACTAGATAAAAAGCATCCAAGAAGTTGCACAG TGTTCCCTTTCCACCCGTGGGATCCAAAAGAACATAGAAAAAATGGAATTGTGTTATGGGTTCCGCAGACCATTGAAGAG CTAATCAAAGCAGCAGCAGCAGATCATATAGAATTTTCTTGTGATTCTTGTATTTTATCAGAAGACGCTGGTAAAATTAC TGATGTGAACATGATTAAGGATGGTCAGAAGCTGTATTTAGTCCATGAAACGCATTAG
Protein sequence (LotjaGi1g1v0096100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYKRTPIALRYLKSGFIFDFLGCMPWDLIYKACGRREGVRYLLWIRLFRAQKVVDFLYNMEKDIRINYIITRIVKLLVV ELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSKFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIF IMIYVSFDMILGAYLIGNMTALIVKGSKTEKYRDRMTDILRYMNRNRLGRDVREQIKGHVRLQFESRYTDSALLHEIPMS IRAKISQTLYLPYIEKVYLFKGCSSEFINQIVIKLHEEFFLPGEVIMEQGNAVDQLYFVCHGLLEEVGIGEDGTEETATL LQPHCSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILDIYFYDGKKVMGNLLEGKESLRGKQLESDITFHIGKLE SELALKVNRAAFDGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDVTLFLIQEGVDVNIKDNFGNTPLLEAVKNG HDPVASLLVREGAAMNIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAAAEGLYFMTKLLLEAGASVF IKDRWGNTPLDEARMCGNKNLIKLLEDAKSAHLSEFPCSPHELLDKKHPRSCTVFPFHPWDPKEHRKNGIVLWVPQTIEE LIKAAAADHIEFSCDSCILSEDAGKITDVNMIKDGQKLYLVHETH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 685 | 685 | 0.0 | – | |
| Phobius | 1 | 132 | 132 | - | – | |
| PANTHER | 1 | 685 | 685 | 0.0 | – | |
| SUPERFAMILY | 7 | 184 | 178 | 3.66E-28 | – | |
| Pfam | 8 | 184 | 177 | 3.4E-18 | ||
| Gene3D | 72 | 196 | 125 | 2.4E-14 | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| PRINTS | 83 | 93 | 11 | 3.8E-5 | ||
| PRINTS | 131 | 148 | 18 | 3.8E-5 | ||
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 133 | 153 | 21 | - | – | |
| Phobius | 154 | 158 | 5 | - | – | |
| Phobius | 159 | 184 | 26 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| PRINTS | 175 | 184 | 10 | 3.8E-5 | ||
| Phobius | 185 | 685 | 501 | - | – | |
| SUPERFAMILY | 187 | 376 | 190 | 2.88E-39 | ||
| Gene3D | 226 | 381 | 156 | 5.0E-28 | ||
| SMART | 259 | 377 | 119 | 2.8E-20 | ||
| CDD | 259 | 373 | 115 | 1.12792E-27 | ||
| ProSiteProfiles | 259 | 362 | 104 | 21.195 | ||
| Pfam | 279 | 363 | 85 | 3.2E-17 | ||
| Gene3D | 386 | 498 | 113 | 3.5E-28 | ||
| ProSiteProfiles | 407 | 585 | 179 | 45.864 | ||
| SUPERFAMILY | 409 | 587 | 179 | 2.26E-48 | ||
| Pfam | 410 | 498 | 89 | 1.7E-12 | ||
| ProSiteProfiles | 435 | 467 | 33 | 15.173 | ||
| SMART | 435 | 464 | 30 | 4.3E-6 | ||
| PRINTS | 436 | 451 | 16 | 1.6E-5 | ||
| ProSiteProfiles | 468 | 500 | 33 | 11.354 | ||
| SMART | 468 | 497 | 30 | 0.0049 | ||
| ProSiteProfiles | 499 | 531 | 33 | 8.736 | ||
| SMART | 499 | 528 | 30 | 280.0 | ||
| Gene3D | 499 | 595 | 97 | 1.4E-23 | ||
| Pfam | 505 | 586 | 82 | 3.7E-9 | ||
| ProSiteProfiles | 532 | 564 | 33 | 12.209 | ||
| SMART | 532 | 561 | 30 | 0.0014 | ||
| PRINTS | 548 | 562 | 15 | 1.6E-5 | ||
| SMART | 565 | 595 | 31 | 500.0 | ||
| ProSiteProfiles | 611 | 685 | 75 | 24.583 | ||
| Pfam | 612 | 680 | 69 | 4.6E-20 | ||
| CDD | 624 | 680 | 57 | 8.76527E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0096100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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