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LotjaGi1g1v0206000.1

Overview

Field Value
Gene ID LotjaGi1g1v0206000
Transcript ID LotjaGi1g1v0206000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51; TrEMBL-Plants: tr|A0A0B2P7X3|A0A0B2P7X3_GLYSO RNA helicase; Found in the gene: LotjaGi1g1v0206000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:44787574..44795634) extracted from Lotus japonicus Gifu genome v1.2.

CGTGGGGTACCTTGGTAATTTAAAATAATATAATGAAAACCACATAAAAGAAAATGTAGACGGTAACTAGGGTTTAGCAA AGCCACCAACATAGTCTGTGTGAGAGAACAGTGTTCATAGTCTGTGTTTCGCAAAGCAGCAGCAATGGCCGAAGAGGAAC ACGACCATCACACCTCCCCTGAGTTCGACGACCAAGCTAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGCAAAACC GAGCATGAAGTAGAACAAGAAGAAGTAGACAATGGGAACGCAGAATCTCCGGAGGAGAGTGAGCAACCACAAACTGAACC AGAAGAACAACAAGAAGTAGAAGTAGAAGAAGACGGTGATGATGAAGAAGAGGAAAAGGTGGAGACCGCTTCTGGGTCTG GAATCATGAGCACCCTGTCTTTTTCGTCTCTGGGTTTGTCTCAACCTACTTCTAAGGCTATTATGGACATGGGTTTTCAA ACCATGACTCAGGTAACGAATATATATATATTTTTTTTCTGTTTACTTTTCTTAATAAAATTAATTGTGAGTGGTAGAAT TTTTAAGTTATCATATTGGCAATGATAATAATAATAATAGAGTGAAGGTTATAATTTATGTGAATGTTATGAAATTTGTA GATTCAAGCTAAGGCGATTCCGCCGCTATTGATGGGAAAGGATGTTTTGGGTGCTGCTAGGACAGGTTCTGGAAAAACTC TTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCTCGCAATGGAACTGGTGTTGTTGTCATA TGCCCAACTAGAGAGCTTGCCATTCAGGTAATAGTTGTTGCTCTTCATGCTCATATTTCCTCTTTTATTGGATGTGGCTC TGGTTGTGACTAATCTCACCACTTATTTTTCAGACACATGCTGTGGCTAAGGAACTGCTCAAGCATCATTCGCAAACTCT TGGGTTGGTAATTGGGGGTGCAGGTAGAAGGATAGAAGCTGAGCGCATTGTCAAAGGGGTAAATCTATTGGTAGCAACGC CTGGTCGTCTTCTTGATCACCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAGGTAAAGTTATGCATCTTTAAT TCAGTTGTTTTAATATGTTCATATTTGACTGCTGACATTGATGGCACTTGAATATTAATAGTGAATATTTATATTTACAT AAGCAATTTGTACAGTGTGTTTACAAGATGATCGAATCAATCCCTTAAGTTTATGGATTAAGATTTCCTAACTAAGGTAA CTAGGATAAAATCAAATCTTAATAACATCTCAACACTCCTCCCCAAGCTGGAGTATAGATATATCCTAGGACCTCGTAAA GATTTATTGAAAATATTGGCAAGCTGATCCTCGGAGCAAACAGAGGAAGTTCTTATGAACTCCAGAGGCTCCTTTCTCTG AGGAAAAGACAGTTGACTTCTAAATATTTTGTCCTCTACAAAACTAATTGATTATCAGTTTATCACACATTAGATTAATG GGACCAAACTTGCTGAACCACAACTCTTGAAGTAAATAAGTGCTTCAGCCACAATAGCTCATATGTTTTGAGCCATAGTT TGATACTTGACCTGGCACTTTGCACACTTTGCTTCTTACTCTTTCACGAAATAAGATTTTCACTAGGAAAACCAATGTAG TGATTTCATAGGTAAGTCTATAATTCTATATTCTAGTTCTAGTTCTTACTCTGAGCTTTTGCATGATTTGGCAGTGTCTC ATGATTGATGAAGCAGACAGGATATTGGAATCCAACTTTGAGGACGAAATGAAGCAGATCATTAATATACTCCCGAAGGT ATTGAAACTGTTTGAACATGTTTCTTTTTCCTCCTTCCCCTCCTCAATTATGCAATGAGGTTTTGAAATTTCAATGAAGC CACGAGATCGCATCATGTCCAACCACATCGTCTGTGTGTGGATGGGATTATTTAACTGGTGAACAACAAAAAAAAGTTCC TAAAATATAATTGAAGGGAAAAGTACATTGGACAATGGATGAAAATTTATGACATGATAAAGAAACTAAAATGTTTTCAA GCTCCAGAAGGTTCAGAGCACAGTCTACATGTTTTTTTTTACCAATATGTGATTATTTTCTTATCTCCAACTACATTTAG AGTAGTGAAAGTTTCCATTCCATAAAGTAGTCTTTTTCTGTTAGCATTTTTGGCGTTGGCTACTCTGTAGTCTGTACCAC TATCTGTGGTTAACTCTTTCAATCTGTGTTAAGTTGTTGACTAAATGCTGTCTGGTGAGTATGAATTTTGAATATCAGCA GCTGCCTGCAATTTAACTTGTAACATTCTGAAAATACTGGTGTTTTTCTCTGACAAAGAAGTAGTGCTTTCTTCTGATAT CCATATTATTTGAGTATCAATGTTTCTTCTTAAGGTTCCAAATATTTGCGGTCATCTGGCTGACATTTTTAAGGTTTGGG GCCTAGCTTTTCGGGCTGAGATGTGGTTGCTATATTTCTTACTTAATTTTCCCCATCTTTTCTGGAATGTATTAATCTAG CTTTAAGTTTCTATCTTGTTTTTGGTTTTCCTAATATTTTGAGTATGGCTAATTATTCTGTTTCTCATTTAACAGAAAAG GCAAACAGCTCTGTTTTCAGCTACACAAACAAAAAAGGTTTGTCCTTCAATTTCCATGCTTCTTCACTCCTATCCCTGAA TCAAATCTTGATTCAATTTCGTTCTCTTGACTCAACTCAAGTTTAATAACAGTCATATAAATAACACTCAATTTTCCCCC CTTGATATACTTGAAGTGAAAGCTTTATAATAAATGTTATATTGGAATGTATGAATTTGGGAATGCTAGCATATTGCCTA CTTGCCTGTGCTTTTGACTAAATTTTCCCTGTTGCACTTCAGGTTGAGGATCTTGCCCGCCTGTCGTTTCAGACACCTCC TGTCTATATTGATGTAGATGATGGGAGGAAAAAGGTGGTACTTCTCGACTTGTATCATCTTTGAAGTTTGTTTTTGTAGA ATTATCATAGTTATCTGACAAGATCCTCATCAATGTAGGTCACAAATGAAGGATTGCAGCAGGGCTACGTTCAAGTTCCC TGTGACAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATG CAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTACACTGGGCTGGAGTGCTTGAATATTCATGGAAAACAAAAGCAGC ATACCCGGACAACTACCTTCTTTAGCTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGA CTTGACATACCTGATGTGGTATATTAATTTTTCTTACTAAGTTCCATGAATTTTTCCGACCTGTAAATGTGGTTGGTTGA GTCAATAAGTTGTATCAGCTTTTTATAGTTCAGTCAAAGCTCTTCAGTTGGAACTAGCAAAAATAAATCACAAGTTCACA ACCGCCTGCAAATAAATATTAAAAGAACATAATATGTACTTTCATTTTTAAAAGTAAAAAAATTTAGAGGTGTTGGAGCA TACGAAAAGAAGTTTTATAGAGAAGAGAATGAAATTAGGGAATTTCTGTGGTACTCTAGAACTGGTAATCTTGCTTAGCT GGTAATAGTATTGTTGTTGTATAGGTGACTTCTGGATGAATTTGGGTACAGAATTAAGTGGTTGGTTCAAGGGTGCCAAA ATAATAGGAGTAGCTAAGAATCTCCAGAAAGAAACATTATAGCAAAAGATAAGATACCTTATAGGTCTGGACCAGAGATT TAGATGAAAAATAGGAATAAACTGTAGTCTGTAGATTACTTTTGCTGTAACCTTCACCAGCCGTGGAACTCAGGTTTGGG AAGTGAAAGAATCGATACATCAGGGTAAGTCTTTAGGAATTTGTGTGCCTTACCTCTATGGATTCAACCAGATACTCCTT ATGCTCCTTTCTGCTTTTTTTATTTTCTTCTTCTGGCAATTCTAATAGAGGGATATGCCCAAACCTGCACTTGTCAATTA GCCCCTAACTAGCAACTAGTAACTAGTTTTGGCCTTCACTATCATTTTGTAACCGTTTTGTGCCCAATTGGTTCAGTTGG TCTCTCCTATACTCTTGCCTTATACTTTTCAAACTGGGGCCTAATTTTCTACTAGATAACTATATTAGCTAGTACAAAAA ATCTGAACATACAGGAATAGCACATCAACTAAGTTAAGCTTACTGGATTTCCTACATTCCCAATGACAAACCTCTTAATC AGCCATTACCGAGCTACATAACAAGGTTAAGAAGACTAAATTTGCCCCTAATGCTAGTGTACAATCAATACTTTTCGCGG GCACTTTACTCCTGAAATCCTTGAAATGATGTATATGAAAGTTCTCACATGTGTTGGCACTTATCCTAGTTCAAACATTC CCCAGTGATACCAGAGCTTCCACCGTGACTAGGTAGCATATGGACAGTGTAAGAATAAATGCCAACAAGTCTCATACATT TGGAGAGTGACTCTTTGTCTGGTCGTTCAACAAGTCATTTATTTTGTTTCTATAATCTACCGCAACGTTCATTCTAAAAT GCACCAGAGTCTAACTGAAATACTTAGCAATAGAATCAGACTTCAATTTCCAAAGGAAGTTATCAACAGAGATGCTGGTT TTTTTTTTACCTATCATGATAATCCATGTACAGCTGCGGAACCATAAACTGATGTAAATTTTATGTACTTAGGAATTAGG GTTTGTTTAGAACAGCATTTCTAGAGGTTATATAAATTTATCTTATGAGTGAAGCATTTAAACAGATGTTTTATTAAGCT TATAAAATAGCTTATGACGGTACCTATAAACTCTTTAGAGCGATACACATATGATTAATTAAGCTTTGTTTTTATAAGCT TTTTAAATAAGTGTTTAATTGAGCTATTTACCTGAATGTGCCCTTAGTTTTTGTTTTATGACAATGATAAAACTGAACAC ATTTTGATTTAAATGTCGTATTTATGTTACAACTATATTCTGTTAATTTGCAATCATTAAAGGGCATGCAACAGATTAAC ACTTCTCTCCTTTTCTGCTTCATGTAGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGTACTCCCTTTATT GATGGTCACTACTATGTTTTACCATTTATTTATTTGCATTCTTATACTTAATGCACTGTGTAACATGCTATATGATACTG CTTCCAGGAATATATCCATAGGGTTGGTAGAACTGCTCGTGGGGAAGGTGGAAAGGGAAATGCTTTACTTTTCCTAATTC CTGAAGAAAAGAATTTTCTTCTTTATTTGAAGGTCAGTTTCTCTCTCTTTTTGATAGCTGGGGTTCTAATGTTATGCACT TGCTTTATCAATGGTTACTGGAGGAAACCTCAAGGGTTTCATGCATTTATTAGAGAAGGGAAAGCTGTAATTTTGGTTTT TGTGCAAGTGATAAAATTAGGTTGTGAAATGAAACTATAATATAATGTAGGTTGCTGAAAACTTATTCTTAGACCATCCT GAATTTTGTATGTATGTTTAATCTCAGGCAGCAAAGGTTCCTGTGAAAGAGTATTCATTTGACAATAAGAAGCTTGCAAA TGTACACTCTCAAATGGTATGTTCCTGCTTCCTGAAGTGCTAATTATAAAAACTAGTATGGTAACCATTGCAGCTTATCT CACAAAGTAGCATCTGGATTATGCAGGAGAAGTTGGTGGCTGTCAATTATCATTTGAATAATATGGCTAAGGATGCTTAT AGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGTAAACCT TTCTCCTTGCATTTTACATTATCATTATATACTTCAGGGTTTCCTGAACTGTATGGATATCCATTTCTATCAAGTAGATA TACGAATCTGAATTGATCTAAAATCTGAAGTTTTATTAGTGTATACAGTCATGACATTCCTGATTTAAATCAACTGCCTT TGGGACTTCTTGTATTTTCCTTTCATTTTAATCTCAAATCAAACTTTAGAATAGGTACAAAGTATGTTGGATGAGCGAGT AATATAAAAATATATTTTTGAAACAAAATAATTAAAATGGCAACATAAAAAAAGATATATGTGCAAATTCCTTGTTAAGG TTTCATCGTATGTTAGAAATTCAGTTACTTACATAAAATTGTAGATTCTAGGATAGAAGATAAATAGAGGGGTTGCTACA AGTTATTGATAACCTTCCCTTGTTTCCCTTTGTTACCTATACCCTATGCCACTTTTTAATTCTCTCCTATTTCTTTCTCA TAGATCAGGTCAATTCACCTAACATTTTATTTTCACGTCAAATATTGTCAATCATAAGGAAAGGCTAGCTGCAAGAGTTG TAAAGCACTGCACCTTGGCTTTGCAATTAGCTATTTGCAGAAATTAATAATTTTCTTTATTTAGTAGGAGCAATTAGTAA AACTCAAGGGTTTTTGAAAAAATTGTGTATTCATGGACAACCCTGTATTATTGTGGCTTATGAAGTAACTGTTACATACC CTGCTACATCCATTGAAGTTACCGGTAGAGAAACAATCCCATGTATCAAACTTCTAGTCAAATTGTTGGATAGTCAAATC ATGTATAATATTAACTACAATTACAACATATGATAGTAAAAGTTACTGTTCTTGTGCAGGCTGTTGCTACTTCATTCTGT TTTTCAAACCCACCGAAGGTAAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTTGAAGG AAGAAGACATTGATTCCGCAAAAGCAATGCTTGTAGAAGGAGAATTGCAGATGATAAACGGCTCTACTTCTGAAAGCACT GTCAGGAAACATGTACCAGCACTGTAGTGGATGTTATTCTCATCTCCTTCCCACAATACACCAGAAAATTTTGGTAGGAA TCCCAATTTTATTTAGGTGAGTGTAACTTTGTCAAACAATAGATTATTTGACGGATTATAATTCTTCAACCGGAATGTGT TATGAGCAGTTTTGAACTGAAATATTTGACATGGGTTTCCTATCCTATAAATTCAATTTATAGGCCTGTTCTTTTTGTTG TAAATTTGATCATCAACCTTCGATTACAGCTTTCAAAAGCAATAGCAATACTGAATTGAGATGCGTCGTTCTTTTTTAGG TTTAACATGATATAGTTACAAAGACAATGAAAGGGTTATTTAACAACACTTACCGACTAAATTTTAAAGAGTGATACTGC AAATCAAATACATAAAGCAAAATAAGAGCTGCACACTCAAGTTAGGAAGCTAATACGCCCAACCTGAAACCATGAAATAA AAAATCACTCAAGGCCGTAAAAATCAGTTTAAATTAGGTTGAGGAGTTGCCCACTCTCTTTAGAACCAACTCATTACTCG CCTTCCAGAGAATATCTCAAAAAACAACTACAAACACAATACTCCCAAGGCATAAATAAAACAACCACAAACACAATACT CCCAAGGCATAAATAATCCATACTTCTTATGATTAAGCAGGCTGTTCGCACAGAATTTTGACGGAAATATTGCTCACCCC CAAATTCAAGGACGGAATCTGGAAGAAGAAATGAGTTGAACTAAAAGTGGTGCCCAACATTAACATCGGGGTCAATGGGA TAATCATCAAACTGACAACTCTGACCCAAGCAGAAGACCCAATTTGGGGGTGAGCAATATATCCGTCAGAGTAGAAAACA TAAGTCCGCAAAAAAATTAAACCCACGCCCACAAGACCCAAGCAGAATAAACACCTAAAAAAATTGCACAAAAGGAGAAC TCCAAAAGATCAAGAAACAAGCACCCAGAATAACACCGCAAGGAGCCTAAGAAAGAATATGGTCCTAAGTTCTCCCTCCA ACCCATGAATATGTAAAGTCACTCTAGGCATATTCAAGACTAGGGGTGGAAATAAGCCAAG 

CDS sequence (LotjaGi1g1v0206000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGAAGAGGAACACGACCATCACACCTCCCCTGAGTTCGACGACCAAGCTAAGAAGAAGAAGCTTCGCAAGAGGAA AAGATCTCGCAAAACCGAGCATGAAGTAGAACAAGAAGAAGTAGACAATGGGAACGCAGAATCTCCGGAGGAGAGTGAGC AACCACAAACTGAACCAGAAGAACAACAAGAAGTAGAAGTAGAAGAAGACGGTGATGATGAAGAAGAGGAAAAGGTGGAG ACCGCTTCTGGGTCTGGAATCATGAGCACCCTGTCTTTTTCGTCTCTGGGTTTGTCTCAACCTACTTCTAAGGCTATTAT GGACATGGGTTTTCAAACCATGACTCAGATTCAAGCTAAGGCGATTCCGCCGCTATTGATGGGAAAGGATGTTTTGGGTG CTGCTAGGACAGGTTCTGGAAAAACTCTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCT CGCAATGGAACTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCTAAGGAACTGCT CAAGCATCATTCGCAAACTCTTGGGTTGGTAATTGGGGGTGCAGGTAGAAGGATAGAAGCTGAGCGCATTGTCAAAGGGG TAAATCTATTGGTAGCAACGCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAG TGTCTCATGATTGATGAAGCAGACAGGATATTGGAATCCAACTTTGAGGACGAAATGAAGCAGATCATTAATATACTCCC GAAGAAAAGGCAAACAGCTCTGTTTTCAGCTACACAAACAAAAAAGGTTGAGGATCTTGCCCGCCTGTCGTTTCAGACAC CTCCTGTCTATATTGATGTAGATGATGGGAGGAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTACGTTCAAGTTCCC TGTGACAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATG CAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTACACTGGGCTGGAGTGCTTGAATATTCATGGAAAACAAAAGCAGC ATACCCGGACAACTACCTTCTTTAGCTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGA CTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAG AACTGCTCGTGGGGAAGGTGGAAAGGGAAATGCTTTACTTTTCCTAATTCCTGAAGAAAAGAATTTTCTTCTTTATTTGA AGGCAGCAAAGGTTCCTGTGAAAGAGTATTCATTTGACAATAAGAAGCTTGCAAATGTACACTCTCAAATGGAGAAGTTG GTGGCTGTCAATTATCATTTGAATAATATGGCTAAGGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTAT GAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTTCAAACCCACCGAAGGTAA ATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTTGAAGGAAGAAGACATTGA 

Protein sequence (LotjaGi1g1v0206000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEEEHDHHTSPEFDDQAKKKKLRKRKRSRKTEHEVEQEEVDNGNAESPEESEQPQTEPEEQQEVEVEEDGDDEEEEKVE TASGSGIMSTLSFSSLGLSQPTSKAIMDMGFQTMTQIQAKAIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTP RNGTGVVVICPTRELAIQTHAVAKELLKHHSQTLGLVIGGAGRRIEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLK CLMIDEADRILESNFEDEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYIDVDDGRKKVTNEGLQQGYVQVP CDKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKYTGLECLNIHGKQKQHTRTTTFFSFCKAEKGILLCTDVAARG LDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEKNFLLYLKAAKVPVKEYSFDNKKLANVHSQMEKL VAVNYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVATSFCFSNPPKVNLNIDSSASKHRKKIRKVEGRRH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 86 86 -
MobiDBLite 1 20 20 -
Gene3D 4 301 298 4.6E-72
MobiDBLite 42 79 38 -
PANTHER 49 546 498 9.5E-201
PANTHER 49 546 498 9.5E-201
SUPERFAMILY 86 298 213 4.32E-62
ProSiteProfiles 91 119 29 10.665
CDD 102 299 198 9.25888E-137
SMART 110 315 206 2.7E-55
Pfam 115 286 172 8.0E-46
ProSiteProfiles 122 297 176 30.88
SUPERFAMILY 237 447 211 1.15E-44
ProSitePatterns 243 251 9 -
Gene3D 308 551 244 5.7E-50
ProSiteProfiles 311 481 171 19.671
CDD 312 442 131 1.77937E-50
Pfam 327 431 105 1.7E-23
SMART 351 432 82 4.7E-24
SMART 472 535 64 3.5E-28
Pfam 473 533 61 1.3E-18

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0206000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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