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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0349900 |
| Transcript ID | LotjaGi1g1v0349900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pyridoxine/pyridoxamine 5'-phosphate oxidase; TAIR: AT5G49970.1 pyridoxin (pyrodoxamine) 5'-phosphate oxidase; Swiss-Prot: sp|Q9LTX3|PPOX1_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic; TrEMBL-Plants: tr|I1JV54|I1JV54_SOYBN NAD(P)H-hydrate epimerase; Found in the gene: LotjaGi1g1v0349900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81984504..81989875) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCCATTGCAAAGCCTAATCAATCCAAACATAGCCAAACATATCCTCCAAGTCTTCAATGGCGAAGGTGGAGCCAA CGAGGCAATGATTCCAGAAAATGATTGGGAAAACTCCATTACCAAACCATATAACACCAGCTAAACCGAACTGCTGTTTA AACTGTTAGGAACCCGCAGTGCCTCAACAGTGATGGAATGCAGAAGCAAAAGCCGGAAGCACCTAACCAATGCCTTCATC AATAGTGAAGGGAAGAAGGAGCATGACATCGACACTCACACTAACATCTCTATTCCTCACACATTCCCTCTCTCAAACCC ATAAAACCGCCACCATCCACACCCTCTCTCCCTCTTCTCTCCGCCACCGCAACCCCCTCTTTCAATTCTTCTCCGTAAGC CACTCCTCCTCCTTCCTCATCTCATCAAATCAATTTTCGATTTCACTTCGAGACTTCTTTGTTGCAGGGTATTCTCAGGC CTTCAAGGATTCGACCAATTTCGACTGCGAAAGCTGCTTCGGTTCAAACCATGGCGAGCGTCGTCGATTCTGACTCTGTG ACTTACCTCGCGCAGCGAGAAGCTGCTGAGATTGATGAAACTCTCATGGGTCCTCTTGGCTTCAGTGTCGATCAGCTTAT GGTCTATCTTCTTCGCTTTTCTTCATTTTTTCCTCTTTCATTTCGCTCTTTGCTTAATTTCTGTTCTTTCTGATATTGCA ATTGCAGGAACTGGCTGGTTTGAGTGTCGCTACCTCCATTTCTGAGGTATTTGCTTTGCTTTGCTAGGTTTGAATTCATC TCTTTGATTTCTAATGCTCATCTCAATTAGGACAGAAACATTAAGTTTTGATCTCTTTATCTATGAATTTCCATGTACTT GAATTGTTGTTCTTTCACAGGTTTACAAACCAAGTGAGTATAGTCGTGTTCTTACTATCTGTGGTCCTGGTAACAATGGT GGTGATGGTCTTGTTGCTGCCCGGCATCTTCATCACTTTGGTTATAAGCCCTTGGTCTGTTACCCGAAGCGTACCCCGAA GCCTCTTTATGCTGGGTTAGTTACTCAGGTACCATGGAGTTCATGTGGGCATAGCTACTCTTTTTCTTTTATTCTTTGTG TTTGTTATTATTATATGTTGCTGTAAGTCTCTGATGAAGTATTGATGATGTAGCTTGAAGCGCTTTCAATCCCGTTCTTG GCAGTGGAAGATCTACCGTCTGATTTATCAAATGACTTTGACATTCTGGTGGATGCGATGTTTGGATTCTCATTTCATGG TAATTTACATTTCTTTTAAACATTGTTTGTGATCCTTGTATATGTACTTCTTCCTCACCAATGTCCTGGAAACAAGGGAT TTAACAATATACTGCTTTTCTGCCTCTAGCTATTGTCTTGCCTGAGCTTCTTATCTGTTATTCATGTATGTTTTCTTTTT ATCTGTGTTAATTGTCTGCTTAGAACATTTTGGCATGTCTGTGTTGCGCATGGGATCCCTATCAGAATAAATTTGATATG AGTGCTACAATTATAAACAATAATTTGCACCAATCTTTCCAACTCACTTTTCACAATCATTTCAATCAAATAGGCTTTCT CTATTATTAACACAAGCTCTGAATCCCAAACTACTGTCTAAGATTTTGAACAAATAGTCCCATTTCGCATTATTTAAATT TGTTATTTTCTGATTGCCAGGTTCTCCGAGGCCTCCTTTTGATGATTTGATCCAAAGACTGGTTTCTCTAAATAATTATA ATCAAAATGGCCAAAAAAAACCAGTTATAGTCTCTATAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGAT GGTACAGGAATTAAACCGGATATGTTGGTATGTTTCTCATGAATGTATCCGTTTCATTTTTTGTTTCTTTAACATTGAAA TTTAGATATAATATGCCAAACGACAATGCTCTTTACTATTTAATACAAAAAGAAAATATTACAAAGTTGAGTACAAAAAG CAAGAATGCATTACAATGCATGATTGAGGTCAAAGGATAAGTTGTTTTTAGAGTAACTTCACACCCTACTTACATGTGTT AAGTCAATCACATTTATTTGCACAACATATACGAAAAACATTTCAGGCAAAATGTTTTATCATCCCACTGATGTGCGTAA GCTTTGTTTAGGTTTCTCTGACAGCCCCAAAATCATGCGCGAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGA TTTGTGCCTCCTGCTATTGCAGAAAAGTATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTCCGAATCGG AAAGCCTCCTCAGATTGATATTTCAGCTCTAAGAGAGAACTATATCTCCCCAGAATTTCTTGAAGAGGAGGTGGAGGCAG ATCCCATTAATCAGGTAAAGTTCATGTAAAAATTACTGTTTATCAGAGTAATTTCCGTTCTTCATCTTTTTCCCCCTGTT GGTGGCTGATGACTTTACCATGATATAGTTTATTTTCCCAATCTGAGTATTTTGAGTATTGGGACTTTAATGGCTATGAT TTTGTGTCAATCTTCATCCATTTTTTTTTGTTAACTGCAGTTTCGTAAGTGGTTTGATGATGCGGTAGTTGCTGGTTTGA AGGAACCGAATGCTATGTCCTTGTCAACTGTAGGGAAGGATGGAAAACCGTAAGATGCTAATTCTCTATTTCTTATCTTA AAATACCGTTTGCCTAAAGACTCTTGTATAGCAATAACTTTCCTGTACTTGCATAATGTATAATATCTGAACTAAATTTC CAAATTATTCTACTCCATTTGGATTCAGCTCATCACGAATGGTATTGCTAAAAGGCGTGGACAAGGATGGATTTGTGTGG TGAGTAATAATATGTTATTTTAATTTCAGAACTTCTTTGGCAATGCTATTTGGAAAATGGTTATTTGTGTTCACCTACTG CAATTGCTTTGTATAGGTACACAAATTATGGAAGTCAAAAGGCACGTGAATTATCCGAAAATCCACATGCAGCACTTCTC TTTTACTGGGATGGTTTAAACCGACAGGTGACTCTTATTTCCATTCTAGCTTGCTCGCCACTTCTTCAGATTGATTAGTT CATACATAGAGTCGGTGAAGTTAATTTTACATGCCTTGGAGTATCATGCATTCTCCTTGGAAACTAATTGCTACAGCATG CCATTATGTACTTTCCTAGGAGGAAAAATGTGGATAAGTATAACAGTTGATAGTTATGACTTCTGAAGAGAATGTTTAAG ATGTGGGTGTTCAATTTTTTTCCAGATGATCTAACTTAGGGGTCTAGAATCTCTATTGTCAACCCCACTGCTGAAGCTTG CTGCATCCGTTAAAATGCAAGTATTATGTGAGATATGTCCAGAGTCCAGACAAAGAAGTGACATAGAAAGGCATATGTCG GAATCCTTAGTCACACTTCTTTTAAAAAGAAAAAGCATTAGGTTTTGCTGTCTTTTCCATCGAACTTTTCCTAAATTCAC ACCTAACCTTATCACCTTTCCTTTTGGAAATCTTGAGCTTGGACACTCTTTGGGACATTGTTTCTCTGAGAACAGAGATT GATATTTGTATATTAGGACAAGCTGCAAAAGAAGTGAACCAAGATGAAATCACATAAATGTTTACTATACAAATTTATTA TCTAACACTTATTATTAATATTATTTGGTCAAAATCATTACTATTATTATTTTGCATTTGTTGACTTGTTTTACATCTGT AATCAAGCAAAAATGTATATCTTTTTGTACATTATTATAAATCACAACTTCTCTGAAAATGTCCTTTTGGAACAAGTAAA TTGAAATGCATTAGTGTTACTTCTTGTAAAATTGCTTGCTGCTAATCAACATTTTTGCTTGTTAATATTTTGTAGCTCTT TATTGCAAGTCTACAAAGCTAGAACAGTGGTTGGTTTGTACCAATTAACATGATGCATCTGGTTCAATCACCCAAACTCC ATATCACTGTGGCTTTTGGTGCATGCCACTTAACAAATTGATAATCATGATATTTCAGGACAATACCTAACATTTTGTGG TCTCCTCGTTTTTCATTATTTCTTTTCTAGGTACGAGTGGAAGGATCCGTTGAGAAAGTCCCTGAAGAAGAATCAGAACA GTATTTCCATAGCCGTCCTAGAGGAAGTCAGATAGGAGCAATAGTCAGCAAGCAGGTCTACTGCTGCTCACTTTAATTAA TCTACTTGTTATATATAAAAATGGTATGATATGTAAACTTATAATTTCAATTTCTCGATGGTTAGAGTTCTGTAGTGCCT GGTAGGCATGTTCTTTATGAGGAGTACAAAGAGCTGGAACAAAAATTTGCTGATGGGTAAGTTATTGAACAACTGCTTTT TAGTTTTGACTCAATGTTGCGAATTCTGATCAGGTCTGTTAGTGCCATGTGATGTTTAATGATTGAACTTTCTTCTTCCA CATCTCCCCTCTGCTTGGACTCCTCACTATTGTATTTTGCCTAGAGTATATCTCTCTCTCATTGATTAACTCTAAGGGAG CTAGAATTAATCCTGTTATTTTCTGCGTGCAGAAGTTTGATCCCGAAACCTAAGAGCTGGGGAGGATACAGGCTAACTCC AAAACTTTTTGAATTTTGGCAAGGACAGAAGTCTCGCTTGCATGACAGGTGGTTGCTCCCCCGTTTATGATAGGTTGTAT GTTTTCTAATTGCCTGTGTTAACATGAATGAAGCCAAAATATATGTCCATAATAACTTCTTAATCAACGTATACTACTGG GTTTTGTTTTCAAGACTCTGTTTAAAATGTTGAGATTTCATTTCCTTCTAGTTAAAGGGGTATTATGCTCTAGAGTACTC TAGGATTATTGTTCTACTCCATATATGGCAAGGGTAAATTTCCCATGAGAATTTCTGGTTGATATTTTATGCATGTTTTA TTGACAGGTTGAGATATGTTCCCCATGAGATCAATGGACAGCGACTGTGGAAGGTTGAGCGATTGGCCCCCTGATTTCTT CTTTTTCCTGTTTCAATGTCTCAAATGTGAAAAGAATAATGGAAATTAACTTATTTTTATAGCTAGACATATATTATTTT TATTGTGCTATTTATACTTATATATATATACATATTATATTATTTCCTGCATTCTGAAATAGTTTAATAAATAAATTTGG GGTGTGCTTGGTTAAACAGTAATAAATCGGTTATGGTATTTTAACTTCATTGAAATAAGTTTATAATAAGTTATATGGAT GCATACCTGCTTATTCATAAGTTAATACTAAGTTTATAAAAGTAAGCTGAAAATAAGTATTTATATAAGTTCTTTCAAAT ATTTGCCACGTT
CDS sequence (LotjaGi1g1v0349900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCATCAATAGTGAAGGGAAGAAGGAGCATGACATCGACACTCACACTAACATCTCTATTCCTCACACATTCCCT CTCTCAAACCCATAAAACCGCCACCATCCACACCCTCTCTCCCTCTTCTCTCCGCCACCGCAACCCCCTCTTTCAATTCT TCTCCGGTATTCTCAGGCCTTCAAGGATTCGACCAATTTCGACTGCGAAAGCTGCTTCGGTTCAAACCATGGCGAGCGTC GTCGATTCTGACTCTGTGACTTACCTCGCGCAGCGAGAAGCTGCTGAGATTGATGAAACTCTCATGGGTCCTCTTGGCTT CAGTGTCGATCAGCTTATGGAACTGGCTGGTTTGAGTGTCGCTACCTCCATTTCTGAGGTTTACAAACCAAGTGAGTATA GTCGTGTTCTTACTATCTGTGGTCCTGGTAACAATGGTGGTGATGGTCTTGTTGCTGCCCGGCATCTTCATCACTTTGGT TATAAGCCCTTGGTCTGTTACCCGAAGCGTACCCCGAAGCCTCTTTATGCTGGGTTAGTTACTCAGCTTGAAGCGCTTTC AATCCCGTTCTTGGCAGTGGAAGATCTACCGTCTGATTTATCAAATGACTTTGACATTCTGGTGGATGCGATGTTTGGAT TCTCATTTCATGGTTCTCCGAGGCCTCCTTTTGATGATTTGATCCAAAGACTGGTTTCTCTAAATAATTATAATCAAAAT GGCCAAAAAAAACCAGTTATAGTCTCTATAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGG AATTAAACCGGATATGTTGGTTTCTCTGACAGCCCCAAAATCATGCGCGAAGAAGTTTGGTGGTCCTCACCACTTTCTAG GAGGTAGATTTGTGCCTCCTGCTATTGCAGAAAAGTATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTC CGAATCGGAAAGCCTCCTCAGATTGATATTTCAGCTCTAAGAGAGAACTATATCTCCCCAGAATTTCTTGAAGAGGAGGT GGAGGCAGATCCCATTAATCAGTTTCGTAAGTGGTTTGATGATGCGGTAGTTGCTGGTTTGAAGGAACCGAATGCTATGT CCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGCGTGGACAAGGATGGATTTGTG TGGTACACAAATTATGGAAGTCAAAAGGCACGTGAATTATCCGAAAATCCACATGCAGCACTTCTCTTTTACTGGGATGG TTTAAACCGACAGGTACGAGTGGAAGGATCCGTTGAGAAAGTCCCTGAAGAAGAATCAGAACAGTATTTCCATAGCCGTC CTAGAGGAAGTCAGATAGGAGCAATAGTCAGCAAGCAGAGTTCTGTAGTGCCTGGTAGGCATGTTCTTTATGAGGAGTAC AAAGAGCTGGAACAAAAATTTGCTGATGGAAGTTTGATCCCGAAACCTAAGAGCTGGGGAGGATACAGGCTAACTCCAAA ACTTTTTGAATTTTGGCAAGGACAGAAGTCTCGCTTGCATGACAGGTTGAGATATGTTCCCCATGAGATCAATGGACAGC GACTGTGGAAGGTTGAGCGATTGGCCCCCTGA
Protein sequence (LotjaGi1g1v0349900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSIVKGRRSMTSTLTLTSLFLTHSLSQTHKTATIHTLSPSSLRHRNPLFQFFSGILRPSRIRPISTAKAASVQTMASV VDSDSVTYLAQREAAEIDETLMGPLGFSVDQLMELAGLSVATSISEVYKPSEYSRVLTICGPGNNGGDGLVAARHLHHFG YKPLVCYPKRTPKPLYAGLVTQLEALSIPFLAVEDLPSDLSNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLNNYNQN GQKKPVIVSIDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKSCAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCV RIGKPPQIDISALRENYISPEFLEEEVEADPINQFRKWFDDAVVAGLKEPNAMSLSTVGKDGKPSSRMVLLKGVDKDGFV WYTNYGSQKARELSENPHAALLFYWDGLNRQVRVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEY KELEQKFADGSLIPKPKSWGGYRLTPKLFEFWQGQKSRLHDRLRYVPHEINGQRLWKVERLAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 13 | 23 | 11 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 543 | 515 | - | – | |
| PANTHER | 83 | 391 | 309 | 1.1E-153 | – | |
| PANTHER | 83 | 391 | 309 | 1.1E-153 | ||
| Gene3D | 85 | 327 | 243 | 3.3E-86 | ||
| SUPERFAMILY | 88 | 317 | 230 | 1.23E-57 | ||
| Hamap | 90 | 325 | 236 | 20.141 | ||
| TIGRFAM | 91 | 285 | 195 | 1.2E-44 | ||
| ProSiteProfiles | 94 | 310 | 217 | 58.693 | ||
| Pfam | 110 | 282 | 173 | 5.1E-35 | ||
| TIGRFAM | 326 | 543 | 218 | 1.1E-85 | ||
| Hamap | 336 | 543 | 208 | 38.543 | ||
| Gene3D | 337 | 536 | 200 | 7.7E-84 | ||
| SUPERFAMILY | 343 | 543 | 201 | 4.12E-66 | – | |
| Pfam | 359 | 445 | 87 | 1.3E-28 | ||
| Pfam | 499 | 543 | 45 | 1.0E-17 | ||
| ProSitePatterns | 509 | 522 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pyridoxamine-phosphate oxidase activity | Catalysis of the reaction: pyridoxamine 5'-phosphate + H2O + O2 = pyridoxal 5'-phosphate + NH3 + hydrogen peroxide. | ||
| Biological process | Pyridoxine biosynthetic process | The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. | ||
| Molecular function | FMN binding | Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-NH2 group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | Cofactor binding | Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0349900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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