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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364300 |
| Transcript ID | LotjaGi1g1v0364300.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Branched-chain-amino-acid aminotransferase; TAIR: AT1G10070.1 branched-chain amino acid transaminase 2; Swiss-Prot: sp|Q9M439|BCAT2_ARATH Branched-chain-amino-acid aminotransferase 2, chloroplastic; TrEMBL-Plants: tr|A0A072V1K9|A0A072V1K9_MEDTR Branched-chain-amino-acid aminotransferase; Found in the gene: LotjaGi1g1v0364300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84029778..84032784) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAACTGATTACATGTACGTTGATAAATGCTACGCTGGTAAGAATTTTGTACGAGGACAACTCACTCGTTATGGAAA CATTGAACTTAGCCCATCAGCTGGGGTCCTAAATTATGGTCAGGTACGATGTGTCCAAAAATACTTAATACCCGTTTGGA TGGAAATTAAAGAATAATTAATAAGTGATTGTCTTCATCCCTGAAATGTGAAATTTAGGGATTGTTTGAAGGCACGAAAG CATGCAGAAGCGAAAATGGGCGATTGCTGCTCTTCCGTCCAGAGGAAAATGCCATCCGCATGAAGATTGGCGCCGAGAGA ATGTGCATGCAATCCCCTTCAATCGATCAATTCGTCGATGCTCTCAAGCAAACTGCACTTGCAAACAAGCGTTGGGTAAG ATCATCCTAAACTAAATCAATGCATTTCAATGATTTCGTGTTACATTTGAATTTCCTCACACAATTGATGTAAACCCTTA TCAGATTCCTCCACCGGGTAAAGGATCATTGTATATGAGGCCTCTCCTCTTAGGAAGTGGTCCAGTTTTGGGTTTGGCTC CTGCACCTGAATACACTTTCCTTGTATATGCTTCCCCTGTTCGTAACTATTTCAAGGTTAGTGATACTTCGTTTGATTTT TCATTTTTCCTCACTTGAATTTACTTCAAAACTTCAATCTTGCTTCTTTAATTTGTACCCACCACAGGAGGGTTCCGCGC CGCTTAGCTTGTTCGTGGAGGAGGATTTTGACCGTGCTTCTCGCCGCGGCACCGGGAGTGTTAAAACCATTTCTAATTAT GCTCCGGTAAGCATTTTTATGTCTTTCAGTTTTTCACTGAAACCAAACAAAACAATATTATTATCCTCTGTGTAAATTAA ACATTAGTACAATATGCAATGGTTTAGTTTTTGTTCATTTTTATTTTTTTTAGCTGGGAAATCTTCGTTTATGCAAGCTT ATCTTATTTGTTGGTGACAGTTTTCCCCAATTTCTTTGACTGTTATTTTTTTTTTCATCACTATCATGTGATTTAGCGTG CGTGTATTTTGAATTCATATGATATCATATCAGTAAATGATATGTAAAGTATATGAATTTGGACAAAAATGTAAAAGGGA TATTGGAGTATTCAATTGTACCACTTGTCTTGACGTGTAGGTCTTAATGGCACAACTTAGAGCCAAGAACAGAGGATTTT CGGATGTGCTATACCTTGATTCAGAGACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGTA CTATTCTTGTAGCATTTTTTCTTTTCAAGCATGTTGCAATGCCGCATATGATGAGTGGCGAGAAACAACAAAAGAAAAAT GTACACCAAGTTAAAACTAGTGTTGTAAGCTAATGAAGGCATACATGAGTCTTTCAAAACTGCAATTCCAGAACTATAAG TTACGATTTAATGCTAGAAATTACAGAAAACTGATTAAAATATGTAAGTAGATGTCATCAAAAGTTTTGGAGACTTTGCA TGTAAGCAGGGATTGGAATGAATGGGAGGTATTCTCGATATTTGATAGATCATATGATATGGGCAAACATACAACCTAAG ATATTAAAAACATAAGGTTGTGTTAGAGAACAGAATTTTAGACAATTGCAGTTAAGTTGAATTGTTTACCTTCCCGTTTG CGCATGTTACCAAACAATTTAGTGAAATTGTCAACTACATTCACTTGCAACTGGCCAATCTAATTTGTTTTCTAATCTCA TAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACCATACTTGCCGGAATCACCAGAAAAAGTGTAATTGAAATTGC TGGTGATCTCGGCTATCAGGTAAGAATATATAATAAGTACTTTTGGCTCCTACATTCAATATTTTGTGCTTGTGTTTGGA TACTAATTGAGGGCAATGTGAATAGACTTCTGAAGCTAATGGATTATGGATATCGCAGCATATTGTTTCTGGCTTTTTGA ATTCATGATTAGTCTTTCTCACAGACAGTAAAAATTTGAGTAGTCATTCGTTAAGTTTGTTTAAACTACACCAGTTATTG TTAATTAGTTTATATTTTTCTGTTGTTGAAGTTTTCAGCAAATTAAACTCGTATAATCCATTAGTATTGTCTTCTACAGC AACAACAAAAGACTTATCCTACTCAGTGTAGTATTGTCTTCTAAACCAGTAAAAATAGAAAAATAAATAGGAACACTATA ATCTTAAAAAAAGAAAGTCAATACAATTTACATTAAAGTAGTCTTACAAGTTCAAGGAAAACAAATGTTTGAAGTTCAGA TCATAGAGTTGATCATATTGGAGCTTTGTGTATTATTTTTCTCTTTCAAATATGCTTACTGCATGACCAAATTTGTTCAG GTGGAAGAGCATGCTGTAAACGTGGATGAATTGATGGAGGCTGATGAAGTATTCTGCACAGGAACTGCTGTTGGTGTTGC CCCTGTAGGGAGTATCACATACCAGGACAGAAGGTAATAGTAACTTACATATATAAGAATATTACTTATGTTTTTAGAAA AGAAAAGCTAATTTCTTCTTCGATCATGTATAAACCAGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAA AAACGCTATTTCAAGCGCTATTGCGGCGCTATAGCGGCAAATAACGCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACC CCCAGGGCGCTACGCTATAGGCTATTGCGCCGCTATAACGTGCTATTAACAAGCCTGATAAAAACTATATAAAACTTCCT CTCTAGATTACAAATCTTAACTATTTTATTTAACAGGTATAAATGCATCATATCAGTCTAAAATTTGCTGAAATATTGTT ATATATCTGCAGGGCGGAATATAAAACAGGTTCCGGAACCATTTGTCAAGAGTTGTACAAAACTATATCAGGAATTCAAA CGGGTACTATTGAAGATAAGAAGGGGTGGATTGTTGAAATTGATTAA
CDS sequence (LotjaGi1g1v0364300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAACTGATTACATGTACGTTGATAAATGCTACGCTGGTAAGAATTTTGTACGAGGACAACTCACTCGTTATGGAAA CATTGAACTTAGCCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTGTTTGAAGGCACGAAAGCATGCAGAAGCGAAA ATGGGCGATTGCTGCTCTTCCGTCCAGAGGAAAATGCCATCCGCATGAAGATTGGCGCCGAGAGAATGTGCATGCAATCC CCTTCAATCGATCAATTCGTCGATGCTCTCAAGCAAACTGCACTTGCAAACAAGCGTTGGATTCCTCCACCGGGTAAAGG ATCATTGTATATGAGGCCTCTCCTCTTAGGAAGTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTGAATACACTTTCCTTG TATATGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGTTCCGCGCCGCTTAGCTTGTTCGTGGAGGAGGATTTTGACCGT GCTTCTCGCCGCGGCACCGGGAGTGTTAAAACCATTTCTAATTATGCTCCGGTCTTAATGGCACAACTTAGAGCCAAGAA CAGAGGATTTTCGGATGTGCTATACCTTGATTCAGAGACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTA TTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACCATACTTGCCGGAATCACCAGAAAAAGTGTAATTGAA ATTGCTGGTGATCTCGGCTATCAGGTGGAAGAGCATGCTGTAAACGTGGATGAATTGATGGAGGCTGATGAAGTATTCTG CACAGGAACTGCTGTTGGTGTTGCCCCTGTAGGGAGTATCACATACCAGGACAGAAGGGCGGAATATAAAACAGGTTCCG GAACCATTTGTCAAGAGTTGTACAAAACTATATCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGGTGGATTGTT GAAATTGATTAA
Protein sequence (LotjaGi1g1v0364300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTDYMYVDKCYAGKNFVRGQLTRYGNIELSPSAGVLNYGQGLFEGTKACRSENGRLLLFRPEENAIRMKIGAERMCMQS PSIDQFVDALKQTALANKRWIPPPGKGSLYMRPLLLGSGPVLGLAPAPEYTFLVYASPVRNYFKEGSAPLSLFVEEDFDR ASRRGTGSVKTISNYAPVLMAQLRAKNRGFSDVLYLDSETKKNLEEVSSCNIFIAKGKCISTPATNGTILAGITRKSVIE IAGDLGYQVEEHAVNVDELMEADEVFCTGTAVGVAPVGSITYQDRRAEYKTGSGTICQELYKTISGIQTGTIEDKKGWIV EID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 323 | 323 | 1.0E-194 | – | |
| PANTHER | 1 | 323 | 323 | 1.0E-194 | – | |
| PIRSF | 1 | 323 | 323 | 3.1E-109 | ||
| Gene3D | 1 | 150 | 150 | 3.1E-52 | ||
| SUPERFAMILY | 3 | 319 | 317 | 1.01E-94 | ||
| TIGRFAM | 19 | 322 | 304 | 7.7E-94 | ||
| CDD | 29 | 310 | 282 | 6.85642E-120 | ||
| Pfam | 42 | 280 | 239 | 1.3E-39 | ||
| Gene3D | 151 | 323 | 173 | 6.3E-60 | ||
| ProSitePatterns | 206 | 235 | 30 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Branched-chain-amino-acid transaminase activity | Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. | ||
| Biological process | Branched-chain amino acid metabolic process | The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. |
Expression pattern of LotjaGi1g1v0364300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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