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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0422700 |
| Transcript ID | LotjaGi1g1v0422700.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G45000.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A; TrEMBL-Plants: tr|A0A072VDE6|A0A072VDE6_MEDTR 26S proteasome regulatory particle triple-A ATPase protein; Found in the gene: LotjaGi1g1v0422700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91683625..91689197) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTTCATAAGTTTGTAGTCATAAACTACTCCAACGTTTGAGCTTTACTCCTTCAACACTCTTCCTCTTTTCCGATTCC GGAGTTTCCCAACCATGACTGACGCAGCGGAAGACGCCGTGCGACGCCGTACCGCGGTGGCGGATTATCGGAAGAAACTT CTTCAGCACAAAGAATTGGAATCCAGAGTGCGATCCGGTTAGTCTCTTAATCGATTGTACTGCAATCTAGGGTTCCTTCC CCCTGGTTGAGAACATAAAAATTCCTTCTCGCTTTTCAATTTTTGCTTCGTCTCAGTTTTAGGGTTTGTGCTCCAGCTCC TGGGCTTTTGTATGCATTCGTTTGCTTGGTCTCTGAAAACCCTATTGTCTTGCTTGATTAGGGTTTAATTTGTTTAGGTG AGAAATTTCTGTGGTTTGTTTGAGAATTTGACCAATGAGAAATGTGGTTTTGATGGTTTTACGTGTGTTTCTGGAATTTA GGGTAAGGTTATCAACTGGATCTGTTTTCAAAACCACTTTGAGGTTCTTCTGTTGAAATAATAGTAGTTTCATTATTGAG CAACGAAACCGCGAGACCAAAGGGGCATGACTTTCTGAGCTAGGCTGTTCATGGCTAAGCCACAATGTTCATTCATGAGC ATGCCCTGTGCTGTTCAAAATTGGAAATTCCTTAATCAGCTGCTTTAGCTTATGATTTTATGTTAACAGTCAGTTTCACT AGTTTCCAGTCTCCTTTTATTTCGTGTACTTGAATCCTAATGGATGAGAATTGTGACTTTGGTTTCAAACTGAAATTGCA GTGAGGGAGAACTTGCAAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCA GATAATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGCTGTAATTATTCTAACCCTTTCATATTTGAATTATATCTCA TGGCATCTCATTATGGAACTTCACCCTTCCTCACTACATCTATATTTAGGTCGTCTCTGTTGGAAACATGGATTACCTGC AAATTGTGTTAGAATAGTATATCTAGATTATTTGCATGCCCAATAAACAATCCTTACTGTTTTCTTGATTGTTTTTGTTA TTTCAGTGATTGTTAAAGCAAGCAGTGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAACTGACT TCTGGTACTAGAGTGGTTCTTGATATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTACGTTTTCAAAGTTT ATTCTTTTCATAGTTTTATTTGATGAATGTGTTTGTGTCTTGTTGGGCAAATTGTTTTGGGTTACTGTTATTTCTCTAAA TTATCTGTTGCTTATTGTGCTTGCTTGCCACTAATATGTTTCAATTGAGTTGCCAGGTTGATCCCGTCGTGTACAATATG CTTCATGAAGATCCCGGTAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAAT TGAATTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGTAACTTTTTATTTACTACCTT TTCTAGTCCCTAATCTATATTAGTGTGAACATGTGATTTTAGCAGCATGTTCATCTAAATCTCTACATTTATTTTGGAAG CATTTCTTATTAAGCCATACTTCTAAATTTTACATTTGATCAGAGCATCTTCTCTACTCTCTCATCTTACAGGGTGTTCT TTTATATGGACCTCCTGGCACTGGCAAAACATTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGG TCAGATTATGTTTCTTTTATTGATTCTGTGTGTTTTAAAATGTCCTTTATAATAAACTGTATTTCACCTTCCCTTCATTC GAATGCAGGTGGTTTCAAGTGCCATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTAT GCACGTGATCACCAGGTGCGATTCTTGTGTTGTCTTTTGACTGGTTTATATATACAACATTAGAAGTAGTTTTAATTCTC CAACTTTTTGTGTAGCCCTGCATTATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAG TGCAGATCGTGAGATTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTAGGGAAGGTATATT TTATTCCTCAATTCCTTTTAAATTGATTTAGAAATAGCCATCACGCTCGACTTTTAGAAAAATTTAAAGACATTGTACGG TTCTTTTCAAAACGTCTTTGAACTTGCATCTTACCAAGTTTCATATTCAAAATGAATGTGCTGTGAATTGTTACAAACCG TGATTACCAACAGAAGAATAGAATGGAAAATCTAAAGAACAAGAATAGTTCTCCCCAAAGGTTTGCTCTTCACAGAAGAT TTGTCTCAACTATACTTGTTATCAATATCGCCCCCTTGAAATAGTAATTCCCACTGATAATCATTGCGTAATGCTCCCTC CCCCTAGTTCTTGACAATCTCCACATACCTAGTGACTTGTTTACCTTCTGCCAAGATCATAATCCTCATATATTTTTGGG TGCTTGTGCTTGGGGAATAATGGTAGGCCCTACTGGAAACATCTCCCTTCTTCCTGCCTGTATTTATCATAAGGAAGTTG TCGGGTTCCTCTATTTCTGGATGGGAGCATTAGTAGTGTTGGATTTTGAGGGCAACCGAGGTGCAACACCCCTTTTCTTC CTTGCTGACCCCATCATTCTAGCAGAATAATGGCTTGTGCTCAAAGTATTCTTGAATGACTCTGATAAGAACCTTGAGAG AACCACACCACAAAATCTAGCTGTTGTAGTTGGAGAGCCCTAGGCCTTATAAACCCCACATTAGAATCCCATACTTCCAA TGTGGAACTCAAGTCCCGTACCTTGCAATTGGGCCCTAACAGACTCAGATGACCCTTGCTCTTGAGTTGGGCTTGGTGTG CCCGATAGGTTTATGCCAATGAAAGAAACAACTGTCCCCCCTCCTCAATAACGAGATGCTCTGTTTGGAGCTGGACATTT CCTCCCCTACATCACTGGCTAAGTTGATAGCCTTCATGACATTCTTTGGAACTTGGGTGCGCATCCTACATTGGATTTGT CTTCCATTCGACCCATGAAGTAACACAACAGCTGCTCTTCTATCATCGCTGCCGCCTGTCCGGTCAAACACTTCAAACTC TTGAATGTACTTTTCCACTGTCACTGATTAACTCAAGTAGTCGCTTTTACACATTTCCCAAGTTTTTCCCTCCCAAATGT CGGCTTAAGGCTGCGGTTAGGCCTACCCATGGCAGCGCTTGATTCATTCTCTTCTAGAATCGAAACCAATCTTAGGCTGC ACCTTCTCTCTACGGCTTTCATTATGTGAATCTGAAAGAACTTCTCAGCCCTCAGAATCCACCTCAAATGGTCATGGCAT TCGAAAGTGGGTAGTTCCAAGTTTCCACCCAAGGTTGATCACTCTTGTTCGTGTCATTAGAGCTGCTGACCTCTTGGTTC CCATTGTCTGATTTGTGTTTAGGCAATAGGGACCTCACCACCCACAAGTTCGTCTTGTGTATCGAGATTGTTCTCCCAGT CAGTACCGTGCTTCTGCATCCACAGCGCAAGACACTTATTAACATCAATGGCTACCACATCCTTTCTTATTCCAGCAAAT TGAGAATCTTAGAAAACTGAGTACCTTATTCACTAGCCAATTCTTGAGATACTCCGAAACTTGCAAGGCTGCAATTGTCA ACTCTGTTGCTTCCATTGGACCAAACTTGTTATGATCCATTTTTAAGAAACGAAGAATAGAGTGGGCGATATGAATCCTT TATTGCTGAATGAAATCTGAACAGAAATGGACAATGGATTTCTCCCCAATGTTTCTCCTTCACAAAGGATCTCTCCTTTC AAAAAAAAAATCCAAATGCCCCCATTTATTCTGGCTACCCTTGTTTATCTCACCAATATCTTCTAACTAGTGTGGACTAA CCGTTGTCCTTGTTCTGTCTCAACAATCCATCTCAGCATGAAATGAACCACGCATTGACAATTTTTCAAACAAATGAGTT GCTATTTCATGATATTTCCTCTTTGGTAACAATGAAGTAAAGTTTAAACCTATCTTCATAGATGCTTTTTAAGGTGTGGA ATATTTAGCAGAGTTTTTCTTGTAAGATATAATTCGCATGAAATAAATATATAAGCACCGACCTTTTTCGTTGATACATT ATTGTGGATAATGTGATCGAATAATTTTTTCCTCTAAAATACTGTTTAGCAGAACTGTAATTGTGGATTGATGATGACAT AGCTGTCTGTACTTACTTTTTAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGT CCTGGGAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAGATTCATGCCGC TGGAATTGCTAAGCACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGTGAGTCTAGGTGCCTTGGATTATT AGTTTTACTAACTACGTGTACATGTATGACATTAATATCCTGTGTGTTAAAAAATTTCAGGGATTTAATGGGGCTGATCT TCGGAATATCTGCACGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTATGAAGG TGAGCGCTGTTCAGGAAACAATTTTTCCTTGGTATTTATTGATCATACTACAAAGGGTGTTCCTCTCCTTGTCTCTTACA ATTACTTTTGTACAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGG AAAAGACTAGAATCTATTGGAAAATTCTTTCAGAGCCATGGATATGTATGCCGGTGCTTCTTCTGAGCCAGAAATACCTC TTGCAAGTTGGTGAATTCGTAGAACTAAGCATTATGCTCCCTTTGGGTTTTCTTGTACTATCCGAATTCTAAGTTAGTAG GACTTACCAAACGGTGAAAGGGTGTTTAATTGAACTGTTTGCTCAAACTCAAATGTAAGATCCTTTTTATTTATATTTGT GGATCTAGAAGTGCAGTTCACATACTTATACTAACATCTTGGCGGCAGGTGCTTGTCAATTTGTCTTTCATTTTAAGAGA ACTTAAAATTTCAGTAATGCGTGTTTGCTTGATTCAAAATTTGTAACTTGTTTTGTGGAACAATGACGACCGGATGTTAA AGTAATGTTTTTTTTTACGTGATTAATGTGTCGATATATGTTGGGAGGAAAAAATGGGTAAAAGGATTTGATCGTATTAT TTACTTGAATTTCTCTTTTCATCAAAATTTGCTTGAATTTCAAAGAATAGAAATTTGGGTGATTGGAACAGAAATTTAAG TGATTAAGCAATTTAATTACATTTTATCGTCAATTCAATATTATTGATTGTGC
CDS sequence (LotjaGi1g1v0422700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGACGCAGCGGAAGACGCCGTGCGACGCCGTACCGCGGTGGCGGATTATCGGAAGAAACTTCTTCAGCACAAAGA ATTGGAATCCAGAGTGCGATCCGTGAGGGAGAACTTGCAAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGATTTGA AGTCTCTTCAAAGTGTTGGGCAGATAATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGCTTGATTGTTAAAGCAAGC AGTGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGTACTAGAGTGGTTCTTGA TATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCCCG GTAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGATG AATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGGTGTTCTTTTATATGGACCTCCTGGCACTGGCAAAAC ATTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGGTGGTTTCAAGTGCCATAATTGATAAATACA TTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCCTGCATTATTTTTATGGATGAG ATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACACTAATGGAGCTGCT TAATCAACTTGATGGATTTGATCAACTAGGGAAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTG CTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAG ATTCATGCCGCTGGAATTGCTAAGCACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGC TGATCTTCGGAATATCTGCACGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTA TGAAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGGAAAAGACTAG
Protein sequence (LotjaGi1g1v0422700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDAAEDAVRRRTAVADYRKKLLQHKELESRVRSVRENLQASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKAS SGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLM NPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDE IDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 399 | 399 | 4.5E-264 | – | |
| PANTHER | 1 | 399 | 399 | 4.5E-264 | – | |
| TIGRFAM | 23 | 380 | 358 | 7.6E-137 | ||
| Gene3D | 24 | 128 | 105 | 1.8E-32 | – | |
| Coils | 25 | 59 | 35 | - | – | |
| Pfam | 63 | 118 | 56 | 7.8E-10 | ||
| Gene3D | 129 | 309 | 181 | 6.5E-65 | – | |
| SUPERFAMILY | 136 | 384 | 249 | 3.83E-68 | ||
| CDD | 142 | 309 | 168 | 9.47494E-27 | – | |
| SMART | 172 | 311 | 140 | 2.6E-21 | ||
| Pfam | 176 | 309 | 134 | 4.3E-42 | ||
| ProSitePatterns | 279 | 297 | 19 | - | ||
| Gene3D | 310 | 380 | 71 | 1.3E-20 | – | |
| Pfam | 332 | 374 | 43 | 9.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi1g1v0422700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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