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LotjaGi1g1v0422700.4

Overview

Field Value
Gene ID LotjaGi1g1v0422700
Transcript ID LotjaGi1g1v0422700.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit; TAIR: AT1G45000.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A; TrEMBL-Plants: tr|A9PEV6|A9PEV6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0422700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91684228..91689103) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTGACGCAGCGGAAGACGCCGTGCGACGCCGTACCGCGGTGGCGGATTATCGGAAGAAACTTCTTCAGCACAAAGA ATTGGAATCCAGAGTGCGATCCGGTTAGTCTCTTAATCGATTGTACTGCAATCTAGGGTTCCTTCCCCCTGGTTGAGAAC ATAAAAATTCCTTCTCGCTTTTCAATTTTTGCTTCGTCTCAGTTTTAGGGTTTGTGCTCCAGCTCCTGGGCTTTTGTATG CATTCGTTTGCTTGGTCTCTGAAAACCCTATTGTCTTGCTTGATTAGGGTTTAATTTGTTTAGGTGAGAAATTTCTGTGG TTTGTTTGAGAATTTGACCAATGAGAAATGTGGTTTTGATGGTTTTACGTGTGTTTCTGGAATTTAGGGTAAGGTTATCA ACTGGATCTGTTTTCAAAACCACTTTGAGGTTCTTCTGTTGAAATAATAGTAGTTTCATTATTGAGCAACGAAACCGCGA GACCAAAGGGGCATGACTTTCTGAGCTAGGCTGTTCATGGCTAAGCCACAATGTTCATTCATGAGCATGCCCTGTGCTGT TCAAAATTGGAAATTCCTTAATCAGCTGCTTTAGCTTATGATTTTATGTTAACAGTCAGTTTCACTAGTTTCCAGTCTCC TTTTATTTCGTGTACTTGAATCCTAATGGATGAGAATTGTGACTTTGGTTTCAAACTGAAATTGCAGTGAGGGAGAACTT GCAAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATAATTGGCGAAG TTCTCAGGCCTCTTGACAATGAACGCTGTAATTATTCTAACCCTTTCATATTTGAATTATATCTCATGGCATCTCATTAT GGAACTTCACCCTTCCTCACTACATCTATATTTAGGTCGTCTCTGTTGGAAACATGGATTACCTGCAAATTGTGTTAGAA TAGTATATCTAGATTATTTGCATGCCCAATAAACAATCCTTACTGTTTTCTTGATTGTTTTTGTTATTTCAGTGATTGTT AAAGCAAGCAGTGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGTACTAGAGT GGTTCTTGATATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTACGTTTTCAAAGTTTATTCTTTTCATAGT TTTATTTGATGAATGTGTTTGTGTCTTGTTGGGCAAATTGTTTTGGGTTACTGTTATTTCTCTAAATTATCTGTTGCTTA TTGTGCTTGCTTGCCACTAATATGTTTCAATTGAGTTGCCAGGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCC CGGTAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGA TGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGTAACTTTTTATTTACTACCTTTTCTAGTCCCTAAT CTATATTAGTGTGAACATGTGATTTTAGCAGCATGTTCATCTAAATCTCTACATTTATTTTGGAAGCATTTCTTATTAAG CCATACTTCTAAATTTTACATTTGATCAGAGCATCTTCTCTACTCTCTCATCTTACAGGGTGTTCTTTTATATGGACCTC CTGGCACTGGCAAAACATTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGGTCAGATTATGTTTC TTTTATTGATTCTGTGTGTTTTAAAATGTCCTTTATAATAAACTGTATTTCACCTTCCCTTCATTCGAATGCAGGTGGTT TCAAGTGCCATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCA GGTGCGATTCTTGTGTTGTCTTTTGACTGGTTTATATATACAACATTAGAAGTAGTTTTAATTCTCCAACTTTTTGTGTA GCCCTGCATTATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGA TTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTAGGGAAGGTATATTTTATTCCTCAATTC CTTTTAAATTGATTTAGAAATAGCCATCACGCTCGACTTTTAGAAAAATTTAAAGACATTGTACGGTTCTTTTCAAAACG TCTTTGAACTTGCATCTTACCAAGTTTCATATTCAAAATGAATGTGCTGTGAATTGTTACAAACCGTGATTACCAACAGA AGAATAGAATGGAAAATCTAAAGAACAAGAATAGTTCTCCCCAAAGGTTTGCTCTTCACAGAAGATTTGTCTCAACTATA CTTGTTATCAATATCGCCCCCTTGAAATAGTAATTCCCACTGATAATCATTGCGTAATGCTCCCTCCCCCTAGTTCTTGA CAATCTCCACATACCTAGTGACTTGTTTACCTTCTGCCAAGATCATAATCCTCATATATTTTTGGGTGCTTGTGCTTGGG GAATAATGGTAGGCCCTACTGGAAACATCTCCCTTCTTCCTGCCTGTATTTATCATAAGGAAGTTGTCGGGTTCCTCTAT TTCTGGATGGGAGCATTAGTAGTGTTGGATTTTGAGGGCAACCGAGGTGCAACACCCCTTTTCTTCCTTGCTGACCCCAT CATTCTAGCAGAATAATGGCTTGTGCTCAAAGTATTCTTGAATGACTCTGATAAGAACCTTGAGAGAACCACACCACAAA ATCTAGCTGTTGTAGTTGGAGAGCCCTAGGCCTTATAAACCCCACATTAGAATCCCATACTTCCAATGTGGAACTCAAGT CCCGTACCTTGCAATTGGGCCCTAACAGACTCAGATGACCCTTGCTCTTGAGTTGGGCTTGGTGTGCCCGATAGGTTTAT GCCAATGAAAGAAACAACTGTCCCCCCTCCTCAATAACGAGATGCTCTGTTTGGAGCTGGACATTTCCTCCCCTACATCA CTGGCTAAGTTGATAGCCTTCATGACATTCTTTGGAACTTGGGTGCGCATCCTACATTGGATTTGTCTTCCATTCGACCC ATGAAGTAACACAACAGCTGCTCTTCTATCATCGCTGCCGCCTGTCCGGTCAAACACTTCAAACTCTTGAATGTACTTTT CCACTGTCACTGATTAACTCAAGTAGTCGCTTTTACACATTTCCCAAGTTTTTCCCTCCCAAATGTCGGCTTAAGGCTGC GGTTAGGCCTACCCATGGCAGCGCTTGATTCATTCTCTTCTAGAATCGAAACCAATCTTAGGCTGCACCTTCTCTCTACG GCTTTCATTATGTGAATCTGAAAGAACTTCTCAGCCCTCAGAATCCACCTCAAATGGTCATGGCATTCGAAAGTGGGTAG TTCCAAGTTTCCACCCAAGGTTGATCACTCTTGTTCGTGTCATTAGAGCTGCTGACCTCTTGGTTCCCATTGTCTGATTT GTGTTTAGGCAATAGGGACCTCACCACCCACAAGTTCGTCTTGTGTATCGAGATTGTTCTCCCAGTCAGTACCGTGCTTC TGCATCCACAGCGCAAGACACTTATTAACATCAATGGCTACCACATCCTTTCTTATTCCAGCAAATTGAGAATCTTAGAA AACTGAGTACCTTATTCACTAGCCAATTCTTGAGATACTCCGAAACTTGCAAGGCTGCAATTGTCAACTCTGTTGCTTCC ATTGGACCAAACTTGTTATGATCCATTTTTAAGAAACGAAGAATAGAGTGGGCGATATGAATCCTTTATTGCTGAATGAA ATCTGAACAGAAATGGACAATGGATTTCTCCCCAATGTTTCTCCTTCACAAAGGATCTCTCCTTTCAAAAAAAAAATCCA AATGCCCCCATTTATTCTGGCTACCCTTGTTTATCTCACCAATATCTTCTAACTAGTGTGGACTAACCGTTGTCCTTGTT CTGTCTCAACAATCCATCTCAGCATGAAATGAACCACGCATTGACAATTTTTCAAACAAATGAGTTGCTATTTCATGATA TTTCCTCTTTGGTAACAATGAAGTAAAGTTTAAACCTATCTTCATAGATGCTTTTTAAGGTGTGGAATATTTAGCAGAGT TTTTCTTGTAAGATATAATTCGCATGAAATAAATATATAAGCACCGACCTTTTTCGTTGATACATTATTGTGGATAATGT GATCGAATAATTTTTTCCTCTAAAATACTGTTTAGCAGAACTGTAATTGTGGATTGATGATGACATAGCTGTCTGTACTT ACTTTTTAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGA TAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAGATTCATGCCGCTGGAATTGCTAAGC ACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGTGAGTCTAGGTGCCTTGGATTATTAGTTTTACTAACTA CGTGTACATGTATGACATTAATATCCTGTGTGTTAAAAAATTTCAGGGATTTAATGGGGCTGATCTTCGGAATATCTGCA CGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTATGAAGGTGAGCGCTGTTCAG GAAACAATTTTTCCTTGGTATTTATTGATCATACTACAAAGGGTGTTCCTCTCCTTGTCTCTTACAATTACTTTTGTACA GGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGGAAAAGACTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0422700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCCCGG TAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGA ATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGGTGTTCTTTTATATGGACCTCCTGGCACTGGCAAAACA TTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGGTGGTTTCAAGTGCCATAATTGATAAATACAT TGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCCTGCATTATTTTTATGGATGAGA TCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACACTAATGGAGCTGCTT AATCAACTTGATGGATTTGATCAACTAGGGAAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGC TCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAGA TTCATGCCGCTGGAATTGCTAAGCACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGCT GATCTTCGGAATATCTGCACGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTAT GAAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGGAAAAGACTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0422700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGA DLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23073:SF75
1 292 292 9.5E-206 –
PANTHER
PTHR23073
1 292 292 9.5E-206 –
TIGRFAM
TIGR01242
3 273 271 2.1E-118
IPR005937
Gene3D
G3DSA:3.40.50.300
18 202 185 2.9E-65 –
SUPERFAMILY
SSF52540
29 277 249 1.43E-68
IPR027417
CDD
cd00009
35 202 168 5.59245E-27 –
SMART
SM00382
65 204 140 2.6E-21
IPR003593
Pfam
PF00004
69 202 134 2.1E-42
IPR003959
ProSitePatterns
PS00674
172 190 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
203 273 71 7.8E-21 –
Pfam
PF17862
225 267 43 5.7E-10
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0422700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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