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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0422700 |
| Transcript ID | LotjaGi1g1v0422700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G45000.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A; TrEMBL-Plants: tr|A0A0L9V939|A0A0L9V939_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91684228..91689103) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGACGCAGCGGAAGACGCCGTGCGACGCCGTACCGCGGTGGCGGATTATCGGAAGAAACTTCTTCAGCACAAAGA ATTGGAATCCAGAGTGCGATCCGGTTAGTCTCTTAATCGATTGTACTGCAATCTAGGGTTCCTTCCCCCTGGTTGAGAAC ATAAAAATTCCTTCTCGCTTTTCAATTTTTGCTTCGTCTCAGTTTTAGGGTTTGTGCTCCAGCTCCTGGGCTTTTGTATG CATTCGTTTGCTTGGTCTCTGAAAACCCTATTGTCTTGCTTGATTAGGGTTTAATTTGTTTAGGTGAGAAATTTCTGTGG TTTGTTTGAGAATTTGACCAATGAGAAATGTGGTTTTGATGGTTTTACGTGTGTTTCTGGAATTTAGGGTAAGGTTATCA ACTGGATCTGTTTTCAAAACCACTTTGAGGTTCTTCTGTTGAAATAATAGTAGTTTCATTATTGAGCAACGAAACCGCGA GACCAAAGGGGCATGACTTTCTGAGCTAGGCTGTTCATGGCTAAGCCACAATGTTCATTCATGAGCATGCCCTGTGCTGT TCAAAATTGGAAATTCCTTAATCAGCTGCTTTAGCTTATGATTTTATGTTAACAGTCAGTTTCACTAGTTTCCAGTCTCC TTTTATTTCGTGTACTTGAATCCTAATGGATGAGAATTGTGACTTTGGTTTCAAACTGAAATTGCAGTGAGGGAGAACTT GCAAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATAATTGGCGAAG TTCTCAGGCCTCTTGACAATGAACGCTGTAATTATTCTAACCCTTTCATATTTGAATTATATCTCATGGCATCTCATTAT GGAACTTCACCCTTCCTCACTACATCTATATTTAGGTCGTCTCTGTTGGAAACATGGATTACCTGCAAATTGTGTTAGAA TAGTATATCTAGATTATTTGCATGCCCAATAAACAATCCTTACTGTTTTCTTGATTGTTTTTGTTATTTCAGTGATTGTT AAAGCAAGCAGTGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGTACTAGAGT GGTTCTTGATATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTACGTTTTCAAAGTTTATTCTTTTCATAGT TTTATTTGATGAATGTGTTTGTGTCTTGTTGGGCAAATTGTTTTGGGTTACTGTTATTTCTCTAAATTATCTGTTGCTTA TTGTGCTTGCTTGCCACTAATATGTTTCAATTGAGTTGCCAGGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCC CGGTAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGA TGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGTAACTTTTTATTTACTACCTTTTCTAGTCCCTAAT CTATATTAGTGTGAACATGTGATTTTAGCAGCATGTTCATCTAAATCTCTACATTTATTTTGGAAGCATTTCTTATTAAG CCATACTTCTAAATTTTACATTTGATCAGAGCATCTTCTCTACTCTCTCATCTTACAGGGTGTTCTTTTATATGGACCTC CTGGCACTGGCAAAACATTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGGTCAGATTATGTTTC TTTTATTGATTCTGTGTGTTTTAAAATGTCCTTTATAATAAACTGTATTTCACCTTCCCTTCATTCGAATGCAGGTGGTT TCAAGTGCCATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCA GGTGCGATTCTTGTGTTGTCTTTTGACTGGTTTATATATACAACATTAGAAGTAGTTTTAATTCTCCAACTTTTTGTGTA GCCCTGCATTATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGA TTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTAGGGAAGGTATATTTTATTCCTCAATTC CTTTTAAATTGATTTAGAAATAGCCATCACGCTCGACTTTTAGAAAAATTTAAAGACATTGTACGGTTCTTTTCAAAACG TCTTTGAACTTGCATCTTACCAAGTTTCATATTCAAAATGAATGTGCTGTGAATTGTTACAAACCGTGATTACCAACAGA AGAATAGAATGGAAAATCTAAAGAACAAGAATAGTTCTCCCCAAAGGTTTGCTCTTCACAGAAGATTTGTCTCAACTATA CTTGTTATCAATATCGCCCCCTTGAAATAGTAATTCCCACTGATAATCATTGCGTAATGCTCCCTCCCCCTAGTTCTTGA CAATCTCCACATACCTAGTGACTTGTTTACCTTCTGCCAAGATCATAATCCTCATATATTTTTGGGTGCTTGTGCTTGGG GAATAATGGTAGGCCCTACTGGAAACATCTCCCTTCTTCCTGCCTGTATTTATCATAAGGAAGTTGTCGGGTTCCTCTAT TTCTGGATGGGAGCATTAGTAGTGTTGGATTTTGAGGGCAACCGAGGTGCAACACCCCTTTTCTTCCTTGCTGACCCCAT CATTCTAGCAGAATAATGGCTTGTGCTCAAAGTATTCTTGAATGACTCTGATAAGAACCTTGAGAGAACCACACCACAAA ATCTAGCTGTTGTAGTTGGAGAGCCCTAGGCCTTATAAACCCCACATTAGAATCCCATACTTCCAATGTGGAACTCAAGT CCCGTACCTTGCAATTGGGCCCTAACAGACTCAGATGACCCTTGCTCTTGAGTTGGGCTTGGTGTGCCCGATAGGTTTAT GCCAATGAAAGAAACAACTGTCCCCCCTCCTCAATAACGAGATGCTCTGTTTGGAGCTGGACATTTCCTCCCCTACATCA CTGGCTAAGTTGATAGCCTTCATGACATTCTTTGGAACTTGGGTGCGCATCCTACATTGGATTTGTCTTCCATTCGACCC ATGAAGTAACACAACAGCTGCTCTTCTATCATCGCTGCCGCCTGTCCGGTCAAACACTTCAAACTCTTGAATGTACTTTT CCACTGTCACTGATTAACTCAAGTAGTCGCTTTTACACATTTCCCAAGTTTTTCCCTCCCAAATGTCGGCTTAAGGCTGC GGTTAGGCCTACCCATGGCAGCGCTTGATTCATTCTCTTCTAGAATCGAAACCAATCTTAGGCTGCACCTTCTCTCTACG GCTTTCATTATGTGAATCTGAAAGAACTTCTCAGCCCTCAGAATCCACCTCAAATGGTCATGGCATTCGAAAGTGGGTAG TTCCAAGTTTCCACCCAAGGTTGATCACTCTTGTTCGTGTCATTAGAGCTGCTGACCTCTTGGTTCCCATTGTCTGATTT GTGTTTAGGCAATAGGGACCTCACCACCCACAAGTTCGTCTTGTGTATCGAGATTGTTCTCCCAGTCAGTACCGTGCTTC TGCATCCACAGCGCAAGACACTTATTAACATCAATGGCTACCACATCCTTTCTTATTCCAGCAAATTGAGAATCTTAGAA AACTGAGTACCTTATTCACTAGCCAATTCTTGAGATACTCCGAAACTTGCAAGGCTGCAATTGTCAACTCTGTTGCTTCC ATTGGACCAAACTTGTTATGATCCATTTTTAAGAAACGAAGAATAGAGTGGGCGATATGAATCCTTTATTGCTGAATGAA ATCTGAACAGAAATGGACAATGGATTTCTCCCCAATGTTTCTCCTTCACAAAGGATCTCTCCTTTCAAAAAAAAAATCCA AATGCCCCCATTTATTCTGGCTACCCTTGTTTATCTCACCAATATCTTCTAACTAGTGTGGACTAACCGTTGTCCTTGTT CTGTCTCAACAATCCATCTCAGCATGAAATGAACCACGCATTGACAATTTTTCAAACAAATGAGTTGCTATTTCATGATA TTTCCTCTTTGGTAACAATGAAGTAAAGTTTAAACCTATCTTCATAGATGCTTTTTAAGGTGTGGAATATTTAGCAGAGT TTTTCTTGTAAGATATAATTCGCATGAAATAAATATATAAGCACCGACCTTTTTCGTTGATACATTATTGTGGATAATGT GATCGAATAATTTTTTCCTCTAAAATACTGTTTAGCAGAACTGTAATTGTGGATTGATGATGACATAGCTGTCTGTACTT ACTTTTTAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGA TAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAGATTCATGCCGCTGGAATTGCTAAGC ACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGTGAGTCTAGGTGCCTTGGATTATTAGTTTTACTAACTA CGTGTACATGTATGACATTAATATCCTGTGTGTTAAAAAATTTCAGGGATTTAATGGGGCTGATCTTCGGAATATCTGCA CGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTATGAAGGTGAGCGCTGTTCAG GAAACAATTTTTCCTTGGTATTTATTGATCATACTACAAAGGGTGTTCCTCTCCTTGTCTCTTACAATTACTTTTGTACA GGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGGAAAAGACTAG
CDS sequence (LotjaGi1g1v0422700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCCCGG TAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGA ATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGGTGTTCTTTTATATGGACCTCCTGGCACTGGCAAAACA TTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGATTCGAATGCAGGTGGTTTCAAGTGCCATAAT TGATAAATACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCCTGCATTATTT TTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACACTA ATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTAGGGAAGGTAAAAATGATAATGGCAACAAACCGACCTGATGT ACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGG AAATTCTCAAGATTCATGCCGCTGGAATTGCTAAGCACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGA TTTAATGGGGCTGATCTTCGGAATATCTGCACGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCA TGAAGATTTTATGAAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTG GAAAAGACTAG
Protein sequence (LotjaGi1g1v0422700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT LLARAIASNIDANFLKIRMQVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG FNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 3.5E-203 | – | |
| PANTHER | 1 | 296 | 296 | 3.5E-203 | – | |
| TIGRFAM | 3 | 277 | 275 | 6.3E-116 | ||
| Gene3D | 18 | 206 | 189 | 6.0E-64 | – | |
| SUPERFAMILY | 29 | 281 | 253 | 9.35E-68 | ||
| CDD | 35 | 206 | 172 | 1.09325E-25 | – | |
| SMART | 65 | 208 | 144 | 1.9E-21 | ||
| Pfam | 69 | 206 | 138 | 1.7E-40 | ||
| ProSitePatterns | 176 | 194 | 19 | - | ||
| Gene3D | 207 | 277 | 71 | 7.9E-21 | – | |
| Pfam | 229 | 271 | 43 | 5.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi1g1v0422700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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