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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424400 |
| Transcript ID | LotjaGi1g1v0424400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P25804|CYSP_PEA Cysteine proteinase 15A; TrEMBL-Plants: tr|A0A151RQM7|A0A151RQM7_CAJCA Cysteine proteinase RD19a; Found in the gene: LotjaGi1g1v0424400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91892437..91895727) extracted from Lotus japonicus Gifu genome v1.2.
TACACCAATTTAATATCTTCACGCAATGGTCCATAAAATCCAAATTATCACGCACGAAACCCATTCCAATCAATTTGCCC ATTCCTCTCCTTTTCTCCAATCAGATGGCTGAGGCGCGCCCCTTCCTCCTGTTGGCTCTCATCTTCTTCTCCGCCGCCGT AGCAACCGCCGCGGTGATCGACGATGCCGAAGATCTGCTCATCCGTCAGGTGGTGCCGGAGGTCGAAGATCACCTGCTCA ACGCCGAGCACCACTTCTCCACCTTCAAGGCCAGGTTCGGCAAGACCTACGCCACCGAGGAGGAGCACAACTACCGGTTT GGAGTCTTCAAGAAAAACCTGATCCTAGCCAAATCGCACCAGAAGCTAGATCCCTCCGCCGTCCACGGCGTCACCAGATT CTCCGATCTCACTCCGTCGGAGTTTCGCCGTCAGTTCCTCGGCCTTAAGGCTCCTCGCCATCTCAAAGATGCTCAGAAGG CTCCGATCCTCCCTACCAACGATCTCCCTACCGATTTCGATTGGCGTGAGAAGGGAGCAGTTACTGAGGTCAAGAATCAG GGCTCGTGCGGATCCTGTTGGTCGTTCAGCGCTACTGGAGCCTTGGAAGGAGCTCATTATCTGGCCACTGGCGAGCTTGT TAGCCTCAGTGAGCAACAACTGGTCGATTGCGATCATGAGGTAGCCACTCTTTCCTCTCTAATTTAATTCATGTATAATT ACTTGTAATTCAATCTGACTCTGTATGTGTATTATGCTTCAATTATTTGTGTGTATGTATAATTGTCTTCCTTGATTGAT TGTTATGAACTTTTGATCTAACTAAGGGTGTGTATGGATAAACTGTTTATGTAACCTAATTGCTAATTTGAGATGTTTAT TGAAATCAGCCTAAAACTGGTTGTAGGTAGCTTTAAGCTAAGTAGGTCATAGCCTATTCAAGCTCGCAAAAACACTTAAA TAAGCGTCAATGCTATAAGATAAACTCAAATAAGTTCTTCCTAATGAGACCTTACTGTATGTTGAAGACACAACGCACTT AGGACTATATGTCGAAGCCACGATGCACCTAGGGATGAAACCAGAATATATTGGTAAATGGGTGAAAATTTTATACATGT TAGGTAAAGTCAACATTGGCTAAGTAGAGAAGGTGATGTAAGATTTTTAGAAGGGCCAGTGTAACATTTGAATACTATTG TATGAAAGGAAATTGTTTCTGGTGGAATGGCAGTTCATTTTAATGCACTTGTGTACCTAGTTCTAACATGCCCCCAGCCA CCCACTGACTGCACTCTTTGTTGGAAATTGAACATGGTGGTTTCTTAGGGAGATAATTAAATTGATTTTGATGATCCATT TATGAAAACTTCATGATGTTAATGTGTACAATTTTTTCAGTGTGATCCTGAAGATTCTAGATCATGTGACTCGGGCTGTA ATGGTGGGTTGATGACCAATGCATTTGAGTATACACTCAAGGCTGGTGGAGTGATGCGAGAGAAGGATTATCCTTATACT GGAAGGGATCGTGGCACTTGCAAATTTGAGAAAAGCAAAATTGCTGCTTCCGCGTCTAATTTCAGTGTGGTTTCTGTTGA TGAAGATCAAATTGCTGCAAATCTGGTGAAGCATGGCCCTCTTGCAAGTATGTTTTCTGTGCACAACGCAGGCTTAGCTC TCATCCCCTATCCCCACACCCCGAAATGAATTTTTAACTATCATTATCCAGAGGATTTTTTTAATTGTCCCATTTTTTAT TTCAAAGAACAAGATATATTGAATTGAATTGCTAATTAGAGAAATACTGACCCTTTGCTTTGCATGGCACAGTTGGTATC AATGCAGTTTTTATGCAGACATACATCGGTGGAGTTTCATGCCCATACATTTGCGGCAAGCATTTGGATCATGGGGTTCT TCTGGTGGGCTATGGTGCTGGTGCTTATTCTCCCATTAGGCTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGG GGGAGACCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGACGCAATGTTTGTGGGGTGGACTCCATGGTCTCAACC GTAGCTGCTATACAGACCAACCACTAAACATAAGAATGTCTGATCGTGAGCTGCTATACAGACCAACTCATTGTGATTGT GGCACCAGGCTACTGGACTTTATGTAAATAAGTAGTGTGATGTTTATGGATAAGGAAACTGTTAAGCTCATGTCTATTTA TTATTAGATGTAATACTGTAATTGTCTGTTAGCCAGTCTTACAATGAATTATTGTCCAGGGCAGTTATTAATAGCTATGG CAATTTGGCAAGTAACGATGGAAAATTATGTCTCTGAATAGTAACTATCCAATTATATTTCATTATCATGTCATTATGTA TTCAAATCAGAGACAATCGTTGGTTTTTTTTTGTTGACATAAACCAAATTTCATTGATCAAATAGAAGCAGAAACTACAT CCTTGGATAGGAGCCCTTCGATACCCGGAGGAGCATCCGCTATCCAAATAAAACATTGACCAGGTAGGGCAAACTTTGCG GAAACATGGCGCAAACTAAAGGAATTAAAACTAGACAATAAAACAACACAATCCGACACAATAGAAGCTAAGTACGACAA CTGAGAAGAAAAACTAGACCAAGCTTTAACAACAGACAAATTATCCGTCTCAAAAATAACCTCCTTGAAACCCAAATAAA TAGCAAGCCGCATGGCCCATCGTTGCCATTGCTTCAGCTACCTTGACGTCCCTCGTATGGAACTCATGACCTGCTACTGA GGCAAGGACAGCTTCACCAGAATCCCGCACCACCATGCCCATTCCACACGTACCAGAAGTAGTTGTGGCGACATCCATAT TCACCTTCACCACCCCCAACGGTGGAGCACTCCAACCAGACCCATGCGAGCTGAGTGCTCCATCACGAACGACTGCTATA AGTATCCATTGAGACTAAGTGACAAAGTATCCATTGAGACTAAGTGCCAAAGTATCCAAGAGCACAATGGATGATGGTAG AATTAGTACATTACCTGATGGAATACTTCATCACATTCTCTCTTTTCTTTCAATAGAGGAAGCTGTTGCAACAAGTGCTC TTTCAAAGACATGGATGCCTCTCTGGCTTTCACTCACCAGCATCAGCCTCAAACATCGTGAGCGTCGGTTTATTAATATA GAGGAAGATGAGGGCTTTGAACTCTTCTCGTGGCGTTACTATTATGCCGTTCCTCGCTCCATTTTCAGCTGCAGAGCCCT TGTTGTTCTCA
CDS sequence (LotjaGi1g1v0424400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGCGCGCCCCTTCCTCCTGTTGGCTCTCATCTTCTTCTCCGCCGCCGTAGCAACCGCCGCGGTGATCGACGA TGCCGAAGATCTGCTCATCCGTCAGGTGGTGCCGGAGGTCGAAGATCACCTGCTCAACGCCGAGCACCACTTCTCCACCT TCAAGGCCAGGTTCGGCAAGACCTACGCCACCGAGGAGGAGCACAACTACCGGTTTGGAGTCTTCAAGAAAAACCTGATC CTAGCCAAATCGCACCAGAAGCTAGATCCCTCCGCCGTCCACGGCGTCACCAGATTCTCCGATCTCACTCCGTCGGAGTT TCGCCGTCAGTTCCTCGGCCTTAAGGCTCCTCGCCATCTCAAAGATGCTCAGAAGGCTCCGATCCTCCCTACCAACGATC TCCCTACCGATTTCGATTGGCGTGAGAAGGGAGCAGTTACTGAGGTCAAGAATCAGGGCTCGTGCGGATCCTGTTGGTCG TTCAGCGCTACTGGAGCCTTGGAAGGAGCTCATTATCTGGCCACTGGCGAGCTTGTTAGCCTCAGTGAGCAACAACTGGT CGATTGCGATCATGAGTGTGATCCTGAAGATTCTAGATCATGTGACTCGGGCTGTAATGGTGGGTTGATGACCAATGCAT TTGAGTATACACTCAAGGCTGGTGGAGTGATGCGAGAGAAGGATTATCCTTATACTGGAAGGGATCGTGGCACTTGCAAA TTTGAGAAAAGCAAAATTGCTGCTTCCGCGTCTAATTTCAGTGTGGTTTCTGTTGATGAAGATCAAATTGCTGCAAATCT GGTGAAGCATGGCCCTCTTGCAATTGGTATCAATGCAGTTTTTATGCAGACATACATCGGTGGAGTTTCATGCCCATACA TTTGCGGCAAGCATTTGGATCATGGGGTTCTTCTGGTGGGCTATGGTGCTGGTGCTTATTCTCCCATTAGGCTGAAGGAA AAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGACCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGACGCAA TGTTTGTGGGGTGGACTCCATGGTCTCAACCGTAGCTGCTATACAGACCAACCACTAA
Protein sequence (LotjaGi1g1v0424400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEARPFLLLALIFFSAAVATAAVIDDAEDLLIRQVVPEVEDHLLNAEHHFSTFKARFGKTYATEEEHNYRFGVFKKNLI LAKSHQKLDPSAVHGVTRFSDLTPSEFRRQFLGLKAPRHLKDAQKAPILPTNDLPTDFDWREKGAVTEVKNQGSCGSCWS FSATGALEGAHYLATGELVSLSEQQLVDCDHECDPEDSRSCDSGCNGGLMTNAFEYTLKAGGVMREKDYPYTGRDRGTCK FEKSKIAASASNFSVVSVDEDQIAANLVKHGPLAIGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYSPIRLKE KPYWIIKNSWGETWGENGYYKICRGRNVCGVDSMVSTVAAIQTNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 6 | 359 | 354 | 2.5E-189 | – | |
| PANTHER | 6 | 359 | 354 | 2.5E-189 | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 365 | 343 | - | – | |
| Gene3D | 25 | 359 | 335 | 2.7E-101 | – | |
| SUPERFAMILY | 48 | 359 | 312 | 4.91E-104 | ||
| Pfam | 51 | 107 | 57 | 3.2E-11 | ||
| SMART | 51 | 107 | 57 | 2.1E-21 | ||
| SMART | 134 | 359 | 226 | 2.5E-109 | ||
| Pfam | 134 | 357 | 224 | 2.4E-74 | ||
| CDD | 135 | 358 | 224 | 1.71308E-105 | ||
| PRINTS | 152 | 167 | 16 | 2.0E-10 | ||
| ProSitePatterns | 152 | 163 | 12 | - | ||
| ProSitePatterns | 299 | 309 | 11 | - | ||
| PRINTS | 301 | 311 | 11 | 2.0E-10 | ||
| PRINTS | 323 | 329 | 7 | 2.0E-10 | ||
| ProSitePatterns | 323 | 342 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi1g1v0424400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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