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LotjaGi1g1v0425600.1

Overview

Field Value
Gene ID LotjaGi1g1v0425600
Transcript ID LotjaGi1g1v0425600.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RuvB-like helicase; TAIR: AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FMR9|RIN1_ARATH RuvB-like protein 1; TrEMBL-Plants: tr|K7KZ42|K7KZ42_SOYBN RuvB-like helicase; Found in the gene: LotjaGi1g1v0425600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:92003098..92008521) extracted from Lotus japonicus Gifu genome v1.2.

ATATATAAAGCAATTCAACCAAAGAAGAGAACACAAAGGAAACCCCTGAGCCCTATTTCGAAGGCTTCAGTTCGAAAAGC ACACACTGAGCTCTTGCCAACTCCGGCAAACCGCCACGAGGAACCGACCGATCGCCACCGTCTTTGTCACCGCCGGTGAG TGTCAGTTAAATTCGGTTACAGTTATTCAGTTTTGTTCTGTGTACTCATTATCTAAAGTGATTACATTGCACAGAGAATG GAGAAGATGAAAATAGAAGAGGTTCAGTCCATGTCGAAGAAACAGCGTGTTGCTACCCACACTCACATCAAAGGCCTTGG TCTTGAGGTTCCTTCTCCTTCTCTTCTAGCATTCCAATGGTTTTTTTTTTCCTTGCTTCTGTTGTGTGGAAATTATTGCA AATTTTGAACCTTAGGTTTTGCTACTGTTGTGTAAAAACAAATTGCAAATTTTGAACCTTTTTTTGCAGGCTAGTGGAAG AGCATTGCCATTTGCTGCTGGGTTTGTGGGGCAAGCAGAGGCTAGAGAAGCATGTGGCCTTGTGGTTGACATGATACGCC AGAAGAAGATGGCTGGCCGTGCCCTCCTCCTTGCCGGACCGCCCGGGACTGGCAAGACTGCTTTAGCACTTGGGATATGT CAGGAGCTCGGAACCAAGGTATCATATGAACCATTGTTTTGGTGCCCTGAAAGATGTAAATTACCCTTTTCATCCTCGAA AGATGAAAAAGCGAAAGAAGATAATTCAGAGAATTGTTGATAAATTGAGAGAAACGTAATTCTATTACACAGTAGTTAGT TCATACAATGATGTTATATAGAAGTTTAAGCTATGCATACTAACAGAACTCTAACAGAGTTGTAACAAGCAAACCGAAGC TCTATCGGTGAGATAACAAGCTAAACTGAAACCTAACCAAGCTTACACGTATCCACCACAAAAAGGTTATCAATTTAGTC CTCTTCAGGAACTTAAATGATGTTGTGGAATGACCGAATTGATCGCATTTTTCAGGGATAAAAAAAGTAATTTCTATCTT TCAGTGACTAAAGTGACCCACTCGATATCCTTTGGGTGTGAAATGATGGTTTACTCTTTTGTCTTCGTGACCCTTCCTTC CTTGCTTCTTGCTAATAAAATTTATAATGCCACTTTGCAGGTTCCATTTTGCCCAATGGTTGGCTCAGAAGTATACTCAT CAGAAGTAAAGAAGACAGAAGTTCTTATGGAAAATTTCCGACGGGCTATTGGTCTGCGTATTAAGGAAAACAAGGAAGTA TATGAAGGAGAGGTGAGTTCATTGTAACTGAGATGGGATTGTTGATTTGATCACTTTGCCTTCTGCATGTTATTTTTTAT ATCAAGTCATCTGATGTTTTGACTGGTCTTGTGGAAGGTAACCGAGCTCTCTCCAGAAGAAACTGAGAGTGTAACAGGCG GTTATGGTAAAAGTATTAGTCATGTGATAATTGGGTTGAAGACAGTGAAAGGAACCAAGCAACTCAAGTTGGACCCCACC ATATATGATGCTTTGATTAAGGAAAAGGTGAGGGCTTTCCTCTTGCTGTCATCTTTCTCTCTGTGTGTGTGATCCTAGGT GTAAGAAGTTATAACCTTTTTTTCTTTCTTTTCTAGGATGTTTTTTTAAAGCTATGTAATATTTGTGTCAATCATCTGGT GTTTTGATTGTGATTTATGTACAATACGCAGGTAGCTGTTGGGGATGTTATATATATTGAGGCAAATAGTGGGGCTGTGA AAAGGGTAGGCCGAAGTGATGCTTTTGCTACAGAGTTTGACCTTGAAGCAGAGGAATATGTTCCACTTCCTAAAGGAGAG GTTCACAAAAAGAAGGAGATTGTTCAGGTATTTGATTTGAAGACCAACTTTATATGCATGTAATGCCTCTAAATATTTTT CTAATTTCGTGTAGTTATTATATTATTTGGAATCCCTTGTGATCAACCGTACTAGGAATTCATACTGGCGTTAAGTTTAA TTTCTAAATTTAATTGTTATTTCCAAATTCCAATAACTTCACTTCTATAGTTCCATTTCAAGTTGATCTGTAACTGGCTT CATGTGGATGATAACACGTTAAGATATAGTCTGTTTAGTTAATCTTTTGAAAAATGTTTCCAGAATGTTATTCTTCCATA TTTTACTTTAGATGATGTAAATATAAATCTTTTGGACTTGTTTTCAGAATAGTCAAACTTTTTACATACATATAGGTGTT AAAATAGTTGGAGGTTCAGACTCTGCAAGAATCTGTTTTAGATATTGGGTATTATTTAATATTACTGATTTCTTACTTTT CTTTCGACTGATTTTCTTTTCAAAGGATGTAACCCTACATGATCTGGATGCTGCCAATGCACGACCTCAAGGAGGGCAAG ATATTCTATCTCTTATGGGTCAGATGATGAAACCCAGGAAAACAGAAATCACTGACAAGTTGAGACAAGAAGTTAATAAG GTACTGTCATAACTTGTGATGCATATTTGTAATATTTTGTTTAATTAGTTATGGGGGAATTAGGGGTCTGAAAAGGGAGT TTTTTTTACTTATTCTGATTTATTTATTTTACAATTGTTCTTGGGTTTATTACTTATTTTATGATGTTTTCTGCATTAAA TTGTCATTGGTGATTAATGTAGTCATACTTATAATCCAGAAAAGAAAAAAGGAGAGAAAATATAAAAAAGAGGGTATCTT GAAATGTTTAATTGTTTACTATGTTTATGTTGGTGACAGGTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGT TCCCGGAGTTCTGTTTATTGATGAGGTGATTTTTTCATTAACTCTCTCCCTATCTAATGCTGCAATGGTGTTCAATTAAT CGAGTTTTAATGCTTCCTTGCAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTTAATCGTGCTTTAGAGAGCTCC CTATCTCCAATAGTTATCTTTGCGACAAATAGAGGAATTTGCAATGTGAGGTATGATTAGAACTAATGTTAGTTATAAAG AAGTTTGCTCTGGTGGTAAATTTGGAGAAACCAAATGAATGAAATGTGAGAATTAGATTCCACTCATTCTTGGTTGTCAC TACAACACACAACGCTGTGGTTCCTGACCTTGATATTGAGTTTAACTCATTGTCATGTGACTTTGATGCATGTGGTTTGA AAACAAAATTAATGGTAAACCTTAGGTAGCGAACCCTTGATGTGTAGGGTTTTAGTTTCATACTAAATTGAGGTTTTAAG CCATCCAGTCTTCTTTGGCACACTTTTCATGTCCTGTAAGATAACTGATAATGCTGGACTTATATAGCATCTCAATAGGC CATGCTCTGTTTCCATGATTTGTTGAGACATAGAAGTTCTTTTATGGTTATATTCTTTTGGCTCCATTTTCATTAATTTT ACCATGCTTCAATTTCAGTTCTTAGTTCTAACTACTAACTTGCCTTTGTTTGATACAGAGGGACTGATATGGCCAGTCCT CATGGCATACCTGTTGACCTGCTGGACCGGCTGGCGATCGTTCGAACACTAATCTATGGTCCTGCTGAGATGATACAGGT AATGGGTTATTGTTTTTTCAGGTAGCATTTCAATATGTAAAAGTCTCGTGTGTTTTGGATGTAATAACATACACACTTCT TACCTGTGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAGGAAAGTTTAGCTTTCCTAGGG GAGATTGGACAAAGGACATCTTTAAGGTCTGCATTCTAATTGGCTTTTTCTCCGATGTTTATCTTTCCTATGTTACTTAT TTTAGTTGCTTATATCAGGCACGCGGTTCAGCTTTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACA TTTGTAAGGTAATTTGAAAGGACAAAACTTGCCTACATTACTGATAACATATGGAGTCTCATTTTCAAGTCAGATCTAAA AAAACTCACCCACTCACTTTCTTAATATTTTATTAATTTTATTAATGTGATAACTTTCCTCAATTTCCCCGTTCCTTTCA CGACTGCATGTTCCAGAATTCAGAAACAAATCCATGTTAATGAAATGAAAATAATAGTCCACATGTTATATTGTAATTGG ACAACAGTACAAACAGTATGTGTAGAACTGTAGTTTCAAAAAAAAAAAGTAGGTGTAGAACTGTGTGTACGTAAGTTTTT TGATCATTGGATGTCAAGCAAGCACTTGAAATAATTTGTTTACAACGTCCTTTTCTAGTTTATCTTCAACTAAATAGAGC TATTATTGTTTTGAAATATATAGGCGGATCTTGATGAAGTTTGTTCACTATATTTGGATGCCAAATCATCAGCCAAACTA CTTCAAGAGCAGCAGGAAAAATACATCACATGATGTTATTTTCGAACTGTTGCGAGCGTTGTTGTTTTGGTTTAAAGTAT AACTGGTTCATGTCAGTTTCTTGAGTAGTTTGTTGGTTTGGAGAATCTCACCCACCAGCAGGTTCTCGGTTTGAAACCAG CAGTACATCGGAAAAAAAAAGTAAAACTGGTTTGCTTGTTGCTTCTCTACTTGTGTCTCCTGCATGCATGGCTTGGATAA TTGGTTCGAAGGATACATCTGGATATAGCAGGAACCTGAGATATAGAACCTTGCTCGTTGGATAATATATGTCATGGTTT AAGTTTGCTGTAATTTGTTACTGAAATCATGATTTTGGGATTATTTTGTTATCATATTCTTGTTAACAGAAAGCCAAAAA GCAAATGGAAATTTAATGGGGCACTGTGTTTCATATTTGTTTTCCCATTACTTTTTTTCTTTTTGTTTCTCTAAATTTGC TTTTGTTTGCAATTTGCTATTCTACAACTTTTTAATAGCTAGGGAATCTTCAAGGATGTGATTAACAGTTATCAAGTTCC TTATACCTGTTAGGGGTGCTTATCAACCAATATAATCCAATTATAATTTAATTAACTCTAATTTAAAATTAAAATTCAAT TTCATGAAAGAAAAAATCTTTTTCTCAGAATAACTGAATCATAATTGAGCCAACCAGTGGTTCAGTGAAAAAATCCAAAT GTTTCTCTATAATATTCACTTTGAATTGCTCATAAAGTTGAATACTTTCGAGGACAAGAAAGAAACATCACTTCCTGTGT AAAAAATATTTTATTGAGAAAAATGTTTGTACAAAAGCTAAGCCAATCCAATCCAAATGAAGAACTTCTAGAAAAAAGTA AGAGTCATAGGCCTTGCTTTGCTTAACAAACAAGCTGAGATTGAAAGATATCCATAAAGCTACAAACCTCTCAATAAATC TCTCCAAAGGGTCAATTACTCTAATCACTAGATAAATTGAATTTACGAACAAGTTTCATTAGAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0425600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAGATGAAAATAGAAGAGGTTCAGTCCATGTCGAAGAAACAGCGTGTTGCTACCCACACTCACATCAAAGGCCT TGGTCTTGAGGCTAGTGGAAGAGCATTGCCATTTGCTGCTGGGTTTGTGGGGCAAGCAGAGGCTAGAGAAGCATGTGGCC TTGTGGTTGACATGATACGCCAGAAGAAGATGGCTGGCCGTGCCCTCCTCCTTGCCGGACCGCCCGGGACTGGCAAGACT GCTTTAGCACTTGGGATATGTCAGGAGCTCGGAACCAAGGTTCCATTTTGCCCAATGGTTGGCTCAGAAGTATACTCATC AGAAGTAAAGAAGACAGAAGTTCTTATGGAAAATTTCCGACGGGCTATTGGTCTGCGTATTAAGGAAAACAAGGAAGTAT ATGAAGGAGAGGTAACCGAGCTCTCTCCAGAAGAAACTGAGAGTGTAACAGGCGGTTATGGTAAAAGTATTAGTCATGTG ATAATTGGGTTGAAGACAGTGAAAGGAACCAAGCAACTCAAGTTGGACCCCACCATATATGATGCTTTGATTAAGGAAAA GGTAGCTGTTGGGGATGTTATATATATTGAGGCAAATAGTGGGGCTGTGAAAAGGGTAGGCCGAAGTGATGCTTTTGCTA CAGAGTTTGACCTTGAAGCAGAGGAATATGTTCCACTTCCTAAAGGAGAGGTTCACAAAAAGAAGGAGATTGTTCAGGAT GTAACCCTACATGATCTGGATGCTGCCAATGCACGACCTCAAGGAGGGCAAGATATTCTATCTCTTATGGGTCAGATGAT GAAACCCAGGAAAACAGAAATCACTGACAAGTTGAGACAAGAAGTTAATAAGGTTGTCAACCGATATATTGATGAAGGTG TAGCAGAGCTTGTTCCCGGAGTTCTGTTTATTGATGAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTTAATCGT GCTTTAGAGAGCTCCCTATCTCCAATAGTTATCTTTGCGACAAATAGAGGAATTTGCAATGTGAGAGGGACTGATATGGC CAGTCCTCATGGCATACCTGTTGACCTGCTGGACCGGCTGGCGATCGTTCGAACACTAATCTATGGTCCTGCTGAGATGA TACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAGGAAAGTTTAGCTTTCCTAGGGGAGATTGGA CAAAGGACATCTTTAAGGCACGCGGTTCAGCTTTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACAT TTGTAAGGCGGATCTTGATGAAGTTTGTTCACTATATTTGGATGCCAAATCATCAGCCAAACTACTTCAAGAGCAGCAGG AAAAATACATCACATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0425600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKMKIEEVQSMSKKQRVATHTHIKGLGLEASGRALPFAAGFVGQAEAREACGLVVDMIRQKKMAGRALLLAGPPGTGKT ALALGICQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHV IIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQD VTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEVNKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNR ALESSLSPIVIFATNRGICNVRGTDMASPHGIPVDLLDRLAIVRTLIYGPAEMIQILAIRAQVEELVVDEESLAFLGEIG QRTSLRHAVQLLSPASIVAKMNGRDNICKADLDEVCSLYLDAKSSAKLLQEQQEKYIT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11093
4 457 454 1.8E-264
IPR027238
PANTHER
PTHR11093:SF6
4 457 454 1.8E-264
IPR037938
Pfam
PF06068
17 368 352 1.4E-167
IPR010339
SUPERFAMILY
SSF52540
41 439 399 4.48E-35
IPR027417
CDD
cd00009
43 133 91 5.42451E-7 –
SMART
SM00382
65 372 308 3.4E-9
IPR003593
Gene3D
G3DSA:1.10.8.60
368 458 91 7.0E-30 –
Pfam
PF17856
376 441 66 1.1E-17
IPR041048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0031011
Cellular component Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
Subterm of
GO:0035267
Cellular component NuA4 histone acetyltransferase complex A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
Subterm of
GO:0043139
Molecular function 5'-3' DNA helicase activity Catalysis of the unwinding of the DNA helix in the direction 5' to 3'.
Subterm of
GO:0097255
Cellular component R2TP complex A highly conserved protein complex comprised of two ATP-dependent DNA helicases (Rvb1p and Rvb2p in yeast, Pontin52 and Reptin52 in humans), Pih1p in yeast or PIH1D1 in humans, and Tah1 in yeast or RPAP3 in humans. The complex associates with Hsp90 and is thought to have a role in assembly of large protein or protein/nucleic acid complexes. In this role it is involved in multiple processes such as box C/D snoRNP biogenesis, phosphatidylinositol-3 kinase-related protein kinase (PIKK) signaling, RNA polymerase II assembly, and others.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0425600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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