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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0438500 |
| Transcript ID | LotjaGi1g1v0438500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G28010.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010; TrEMBL-Plants: tr|G7L6K3|G7L6K3_MEDTR TCP-1/cpn60 chaperonin family protein; Found in the gene: LotjaGi1g1v0438500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93339833..93343883) extracted from Lotus japonicus Gifu genome v1.2.
AGTTGACAAAACCCGACTCAACCTACGAACTCTCTCAGTCAGAAACAACAAACAGAGAACCATGATGCCTAAGCGCCTCC TTAACCATCCTCGCTCCACGTTCTCCGTTTCTGTTTCTCCCTTCCATGCTTCTTCTTCTTCTTCTTCTTCTTCAATCCCC AACGTTTCTGACAAGCCCAATCGTCCTCCCTCTCTCTCCGAAGCAGTTTCCCTCTTTCACCGTGCAGTTGATGATCCTTC TTCAGTGCCATCCGCATCGTCCTGCAACTCCCTCATTGACAGCCTGCGAAAGGCGAGACACCATGACCTGCTCTTGTCGG TTTATTCCAAGATGGTACGCGCTTCTGTTTTGCCCAGTTTTACTTCCCTCAGTGCTTTAATTGAGAGTTTTGTCAACACC CACAAGCCAAACTCGGCTTATGGGGTTCTGGGGTTGATGTTAAAGCGTGGTTTTGATGTTAATGTGTATAATTCCAACCT TGTGTTGAAGGGTTTTTGTCAAACTCGTGATAATTGTGATAAGGCCATGGTTTTGTTTTGTCAAATGAAGAGGAATTGTG TTTTGCCTGATACCTTTAGTTACAATACCATTATAAATGGACTTTGTAAAGCTAAGAGATTGGTAGAAGCTAGGGGTTTG TTTGAGGACATGAAGGCCGGGGAATGCCCGCCGAATTTGGTGACATTTAGTACTTTGATTGATGGTCTTTGTAAGAGTGG AGCGGTTGGCGAGGGTCTGGATTTGTTGGAGGAGATGAGGATGAAGGGTTTGGATGCAGATGTGTTTCTGTATAGTTCTC TCATTAGTGCCTTTTGCAGCATAGGTGACACTGAGAGGGGAAAACAACTCTTTAATGAGATGTTGGAAAAGAATGTTACT CCTAACGTGGTTACTTATAACTGTTTCATGAAAGCTCTTTGCAAGGATGGGAAGTGGGAAGAAGCCTCCAAAATGTTGAA TGATATGACGACTCGGGGAGTTCATCCTGATGTTGTTGCTTATACAACTTTAGCTGATGGGCTGGGCAAAAATGGGAGGG CATCAGATGCAATGAAAGTATTGGATTTGATGCTGCAAAAGGGGGAAGAGCCGAATACTGTAACATACAATGTCATCATA AATGGACTTTGTAAGGACGGTCGGGTTGATGATGCACTTGGGATTTTAAAAATGATGGCGAAGAAGGGGAAGAAACCGGA TGCCATTACCTACAACACGTTATTGAAAGGACTTTGTGGAGTTGGCCAAATTGATGAGGCAATGGACCTTTTCACACTGT TATTGAGCAAGGAGTTCCATATCAAGCCTGATGTCTTCACATTTAATTTTCTTATTCAGGGGCTTTGCAAGGAACGGCGT CTTCGTGATGCCGTAAAAGTCCATTCTACAATGGTTCAAATGGGGTTTCCTGGTAACATAGTGACTTACAATATTTTGGT TGAGGGTTATCTAAATGTTGGAAAACTTACTAAGGCATTGGAACTATGGAAATGTGCAGTAGACTTAGGATTTTCCCCCG ACTCAATGACCTATAGTGTCATGATCAATGGTCTTTGCAAAATGCAGATGCTAAGTATTGCAAAAGGACTTTTCAATAAA AGTAGAGCTTGTGGGGTTAGACCTGGAGTAAATGATTACAATGCACTGATGACATCCCTGTGCAGGGAAGGTAGTTTAGA GCAGGCTAGGAATTTATTTCGAGAAATGAGAAATATGAATCATGATCCTGATGTTGCCTCCTTTAATATAATAATTGATG GAACCCTCAAAGCAGGAGATCTTAAATCTGCCAAGGAATTGCTATTGGAGATGGTTCAATTCGATTTGGTCCCTGATGTT ATTACCTTTTCTACGTTAATAAACAGATATTCAAAACTTGGGCTGTTAGATGAGGCCATGTCGCTCTATGAGAGAATGGT CTCTTGTGGTCATGTACCAGATGCGGTTGTATTTGATTCTTTGCTGAAGTGTTATACTTTAAAGGGAGAGACTGAAAAAA TCATTTCCTTGCTTCAACAAATGGCTGATAAGGATGTTATCCTTGACTCAAAATTAACTTCTACCATATTGGAATGCCTT TGCAACTTTCCAAAAGGTCTTGATATAAAGAAGATTCTTCCAAAATTTTCCCAACAGACATCTAAAGGAGAAAGCATTAA ATGCAACGAGCTCCTAATGAAACTGAATAAGGTTCATCCAGAGCTTCAATTATTTTCTGCATGAAAGTTCTTGTTTTCAA GAACATTACATCATGGAATGCTTAAGTAAGTTTTATATTATCTTTTGTCTAATTAGTTATGTTCCATACTTTGTTTACTT TTGTTGCTGAGGTTAAATAGCTAAAATTATCAAGATGGTTTGGCTTCACTTCAGGTTGCTGTATCTCTTATGCTAGGACA CACTTGTTCAGTCGCTGGTTTTGATCAGGTAAGACTTCCTGTCTATTTTATGCCTGCTTAGATCTGGGTTAATATACCAT TGCTGGGTTTACTCTTGTATGTATAGAATATATTATTGGCTTAATTGCACTTTTAGGGTCACAAGCTCTGTCATTGACAC ATGTGAAGTGATATACTATTTGTGCTGGAGAGAATGTTTTATGCTCAGATTTGAGGTCTCAATTTGATGCTTTGGCTAAT ATTTTATTGCTGTTCAAAGGTTTGGAAAAGGAGTGGCAACTGAATAATATATTGCTGTCAATGTGACTTACTGAGGATAA AACGAGTTTTCTCGCTTTTGCTAAAGAATCAGTGTGTGGTTTGTTTAGCTTCTCCATTTTCCTTATAGGCATTGTATGGA ATTATTTCAGGCTCTTTTACCTTATGATTTTTATTTGCAAACTTCACATCCCATTAATATCATGGTTTCCACTTAACTAT GGCTCAACCTTGATCAATTCTCCAGAGATTTCATGAATATTAGGCTACCACAGCAAGGTCACAAGGTGCGAAACGCGTCC TGGACTCTTCCTAATGCAGGAATATGGAAGGTGAATGTTGATGGTGCAGCAAGGGGAAGTCCAGGCATTTGCGGGATTGG AGGAATTCTAAGAAATGCTAAAAATGAAATTAGAGGGTTTTTCTCCAAGAACACGGGTGTGGGTTTTGCTTTTGAAGCAG AAGTTACGGCTATTTTTGAGGCTCTGTCATTGTGTCATCAACATTGCATTCATATTATCATCATTGAGTGTGATTCTTCC TTAGCTGTTGGATGGGTAAATCGCAGGAAAAATAGGCCATGGAAGCTGTCTAATTTGCTAAATCAGATTGATTTTATCAT TCCTTTGGTTAATTGCATGGAGGTGAGGCATAGATTTCGTGAGGCTAACACAGAAGCAGATGCATTAGCAAAGCGTGGAT CTAATAATACAAGGCCTCTTTACTACCTCAACAACGCCTCTTTACTACCTCAATAACTCTGTTTGTGCTTAAATTTACTG ATATTGTTACGTCTTTGCTATCTACTGGTGTATTGCTATTGGTTCTGGAAGGGATAGTAAAGGCTGTGTTATTATGAGAT GGGAAGATGAATGGGACAGTATATTGGTTTCAGTTTGGATGAGTGTAGCGGCATACTGTGCAACCCGAACGTGTTGAACG GCAGGATACATAGAACAGCCCATGTAATTTCTTTGTTCAGATACATGTTTGATATCTTTTTTAGCTTTGTTATTTGGTTC CCCAGTGCAATTGCTTCATGTTTATTTGGTGATTGGCTCTTGTTTGAGTACTCTTTTTCCTCCCTTGGTTTTTTCCACTG GGTTTTTCCTTGGAAGGTTTTAATGAGGCTCTTTCAAGAGTCGCCATAGGCACCAATACAGCAATGGGGACTTGAGGCCT TTGGCTTGAAGTAGTTGGGGTTGAGGCTTTTCCTTGTTTTGTATATTTTGTTTTTCATATCTACATGAGAGGATTGTTCT CATGAATATCTTCATTAATAAAGTTTCTATTTGTTCGCAAAAAAAAAAACTATGGCTCAACCTCTGCTGCGAAGATACTC ACTCTTAGTGCCGTCTATATTTTGTTTTTTTTAGGATGGATTGATAAAGTT
CDS sequence (LotjaGi1g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCTAAGCGCCTCCTTAACCATCCTCGCTCCACGTTCTCCGTTTCTGTTTCTCCCTTCCATGCTTCTTCTTCTTC TTCTTCTTCTTCAATCCCCAACGTTTCTGACAAGCCCAATCGTCCTCCCTCTCTCTCCGAAGCAGTTTCCCTCTTTCACC GTGCAGTTGATGATCCTTCTTCAGTGCCATCCGCATCGTCCTGCAACTCCCTCATTGACAGCCTGCGAAAGGCGAGACAC CATGACCTGCTCTTGTCGGTTTATTCCAAGATGGTACGCGCTTCTGTTTTGCCCAGTTTTACTTCCCTCAGTGCTTTAAT TGAGAGTTTTGTCAACACCCACAAGCCAAACTCGGCTTATGGGGTTCTGGGGTTGATGTTAAAGCGTGGTTTTGATGTTA ATGTGTATAATTCCAACCTTGTGTTGAAGGGTTTTTGTCAAACTCGTGATAATTGTGATAAGGCCATGGTTTTGTTTTGT CAAATGAAGAGGAATTGTGTTTTGCCTGATACCTTTAGTTACAATACCATTATAAATGGACTTTGTAAAGCTAAGAGATT GGTAGAAGCTAGGGGTTTGTTTGAGGACATGAAGGCCGGGGAATGCCCGCCGAATTTGGTGACATTTAGTACTTTGATTG ATGGTCTTTGTAAGAGTGGAGCGGTTGGCGAGGGTCTGGATTTGTTGGAGGAGATGAGGATGAAGGGTTTGGATGCAGAT GTGTTTCTGTATAGTTCTCTCATTAGTGCCTTTTGCAGCATAGGTGACACTGAGAGGGGAAAACAACTCTTTAATGAGAT GTTGGAAAAGAATGTTACTCCTAACGTGGTTACTTATAACTGTTTCATGAAAGCTCTTTGCAAGGATGGGAAGTGGGAAG AAGCCTCCAAAATGTTGAATGATATGACGACTCGGGGAGTTCATCCTGATGTTGTTGCTTATACAACTTTAGCTGATGGG CTGGGCAAAAATGGGAGGGCATCAGATGCAATGAAAGTATTGGATTTGATGCTGCAAAAGGGGGAAGAGCCGAATACTGT AACATACAATGTCATCATAAATGGACTTTGTAAGGACGGTCGGGTTGATGATGCACTTGGGATTTTAAAAATGATGGCGA AGAAGGGGAAGAAACCGGATGCCATTACCTACAACACGTTATTGAAAGGACTTTGTGGAGTTGGCCAAATTGATGAGGCA ATGGACCTTTTCACACTGTTATTGAGCAAGGAGTTCCATATCAAGCCTGATGTCTTCACATTTAATTTTCTTATTCAGGG GCTTTGCAAGGAACGGCGTCTTCGTGATGCCGTAAAAGTCCATTCTACAATGGTTCAAATGGGGTTTCCTGGTAACATAG TGACTTACAATATTTTGGTTGAGGGTTATCTAAATGTTGGAAAACTTACTAAGGCATTGGAACTATGGAAATGTGCAGTA GACTTAGGATTTTCCCCCGACTCAATGACCTATAGTGTCATGATCAATGGTCTTTGCAAAATGCAGATGCTAAGTATTGC AAAAGGACTTTTCAATAAAAGTAGAGCTTGTGGGGTTAGACCTGGAGTAAATGATTACAATGCACTGATGACATCCCTGT GCAGGGAAGGTAGTTTAGAGCAGGCTAGGAATTTATTTCGAGAAATGAGAAATATGAATCATGATCCTGATGTTGCCTCC TTTAATATAATAATTGATGGAACCCTCAAAGCAGGAGATCTTAAATCTGCCAAGGAATTGCTATTGGAGATGGTTCAATT CGATTTGGTCCCTGATGTTATTACCTTTTCTACGTTAATAAACAGATATTCAAAACTTGGGCTGTTAGATGAGGCCATGT CGCTCTATGAGAGAATGGTCTCTTGTGGTCATGTACCAGATGCGGTTGTATTTGATTCTTTGCTGAAGTGTTATACTTTA AAGGGAGAGACTGAAAAAATCATTTCCTTGCTTCAACAAATGGCTGATAAGGATGTTATCCTTGACTCAAAATTAACTTC TACCATATTGGAATGCCTTTGCAACTTTCCAAAAGGTCTTGATATAAAGAAGATTCTTCCAAAATTTTCCCAACAGACAT CTAAAGGAGAAAGCATTAAATGCAACGAGCTCCTAATGAAACTGAATAAGGTTCATCCAGAGCTTCAATTATTTTCTGCA TGA
Protein sequence (LotjaGi1g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPKRLLNHPRSTFSVSVSPFHASSSSSSSSIPNVSDKPNRPPSLSEAVSLFHRAVDDPSSVPSASSCNSLIDSLRKARH HDLLLSVYSKMVRASVLPSFTSLSALIESFVNTHKPNSAYGVLGLMLKRGFDVNVYNSNLVLKGFCQTRDNCDKAMVLFC QMKRNCVLPDTFSYNTIINGLCKAKRLVEARGLFEDMKAGECPPNLVTFSTLIDGLCKSGAVGEGLDLLEEMRMKGLDAD VFLYSSLISAFCSIGDTERGKQLFNEMLEKNVTPNVVTYNCFMKALCKDGKWEEASKMLNDMTTRGVHPDVVAYTTLADG LGKNGRASDAMKVLDLMLQKGEEPNTVTYNVIINGLCKDGRVDDALGILKMMAKKGKKPDAITYNTLLKGLCGVGQIDEA MDLFTLLLSKEFHIKPDVFTFNFLIQGLCKERRLRDAVKVHSTMVQMGFPGNIVTYNILVEGYLNVGKLTKALELWKCAV DLGFSPDSMTYSVMINGLCKMQMLSIAKGLFNKSRACGVRPGVNDYNALMTSLCREGSLEQARNLFREMRNMNHDPDVAS FNIIIDGTLKAGDLKSAKELLLEMVQFDLVPDVITFSTLINRYSKLGLLDEAMSLYERMVSCGHVPDAVVFDSLLKCYTL KGETEKIISLLQQMADKDVILDSKLTSTILECLCNFPKGLDIKKILPKFSQQTSKGESIKCNELLMKLNKVHPELQLFSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 13 | 21 | 9 | - | – | |
| Phobius | 22 | 29 | 8 | - | – | |
| MobiDBLite | 24 | 43 | 20 | - | – | |
| MobiDBLite | 24 | 44 | 21 | - | – | |
| Phobius | 30 | 720 | 691 | - | – | |
| Gene3D | 41 | 188 | 148 | 7.1E-25 | ||
| PANTHER | 56 | 233 | 178 | 5.9E-180 | – | |
| PANTHER | 56 | 233 | 178 | 5.9E-180 | – | |
| ProSiteProfiles | 64 | 98 | 35 | 8.966 | ||
| TIGRFAM | 67 | 99 | 33 | 3.1E-4 | ||
| Pfam | 67 | 94 | 28 | 0.23 | ||
| ProSiteProfiles | 99 | 133 | 35 | 7.256 | ||
| ProSiteProfiles | 134 | 169 | 36 | 8.923 | ||
| PANTHER | 167 | 306 | 140 | 5.9E-180 | – | |
| PANTHER | 167 | 306 | 140 | 5.9E-180 | – | |
| Pfam | 169 | 218 | 50 | 1.3E-18 | ||
| ProSiteProfiles | 170 | 204 | 35 | 12.814 | ||
| TIGRFAM | 172 | 205 | 34 | 9.4E-10 | ||
| Gene3D | 189 | 304 | 116 | 2.3E-38 | ||
| ProSiteProfiles | 205 | 239 | 35 | 11.871 | ||
| TIGRFAM | 207 | 240 | 34 | 2.9E-6 | ||
| Pfam | 235 | 267 | 33 | 4.4E-7 | ||
| ProSiteProfiles | 240 | 274 | 35 | 12.606 | ||
| TIGRFAM | 243 | 276 | 34 | 9.2E-8 | ||
| PANTHER | 271 | 408 | 138 | 5.9E-180 | – | |
| PANTHER | 271 | 408 | 138 | 5.9E-180 | – | |
| Pfam | 274 | 322 | 49 | 4.5E-17 | ||
| ProSiteProfiles | 275 | 309 | 35 | 13.515 | ||
| TIGRFAM | 277 | 311 | 35 | 2.1E-10 | ||
| SUPERFAMILY | 284 | 482 | 199 | 1.52E-6 | ||
| Gene3D | 305 | 395 | 91 | 2.3E-31 | ||
| PANTHER | 307 | 478 | 172 | 5.9E-180 | – | |
| PANTHER | 307 | 478 | 172 | 5.9E-180 | – | |
| ProSiteProfiles | 310 | 344 | 35 | 11.816 | ||
| TIGRFAM | 312 | 346 | 35 | 1.9E-7 | ||
| Pfam | 344 | 392 | 49 | 2.2E-18 | ||
| ProSiteProfiles | 345 | 379 | 35 | 13.603 | ||
| TIGRFAM | 347 | 381 | 35 | 1.1E-9 | ||
| ProSiteProfiles | 380 | 414 | 35 | 11.038 | ||
| TIGRFAM | 382 | 412 | 31 | 2.6E-6 | ||
| PANTHER | 396 | 553 | 158 | 5.9E-180 | – | |
| Gene3D | 396 | 507 | 112 | 5.0E-29 | ||
| PANTHER | 396 | 553 | 158 | 5.9E-180 | – | |
| Pfam | 413 | 444 | 32 | 3.0E-10 | ||
| ProSiteProfiles | 417 | 451 | 35 | 11.444 | ||
| TIGRFAM | 419 | 452 | 34 | 2.3E-5 | ||
| Pfam | 452 | 500 | 49 | 1.9E-13 | ||
| ProSiteProfiles | 452 | 486 | 35 | 11.213 | ||
| TIGRFAM | 454 | 487 | 34 | 6.3E-5 | ||
| SUPERFAMILY | 456 | 658 | 203 | 2.59E-9 | – | |
| PANTHER | 484 | 686 | 203 | 5.9E-180 | – | |
| PANTHER | 484 | 686 | 203 | 5.9E-180 | – | |
| ProSiteProfiles | 487 | 521 | 35 | 10.731 | ||
| TIGRFAM | 490 | 522 | 33 | 1.6E-4 | ||
| Gene3D | 508 | 710 | 203 | 8.9E-41 | ||
| Pfam | 521 | 567 | 47 | 8.9E-12 | ||
| ProSiteProfiles | 522 | 556 | 35 | 11.553 | ||
| TIGRFAM | 526 | 558 | 33 | 6.1E-8 | ||
| ProSiteProfiles | 557 | 591 | 35 | 10.578 | ||
| TIGRFAM | 560 | 593 | 34 | 1.7E-5 | ||
| Pfam | 591 | 638 | 48 | 4.8E-9 | ||
| ProSiteProfiles | 592 | 626 | 35 | 12.836 | ||
| TIGRFAM | 594 | 628 | 35 | 2.9E-9 | ||
| ProSiteProfiles | 627 | 661 | 35 | 8.649 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0438500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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