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LotjaGi1g1v0458700.4

Overview

Field Value
Gene ID LotjaGi1g1v0458700
Transcript ID LotjaGi1g1v0458700.4
Related isoforms 11
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0B0PZW6|A0A0B0PZW6_GOSAR Ubiquitin-conjugating enzyme E2-17 kDa; Found in the gene: LotjaGi1g1v0458700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:96213682..96216442) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTACCCTTTT CTTAATTTTACCTCAATCGAGCATGTGGATATGGTTTTTTTTTGTTAGATGATACGGTTGCTTGGTGTGATTTCGTTGTT GGTGGTGGTGATTTTGTGTGTTGTTTTGCTGATATTGGATGCTGCATATTTTTAGCGTCTGCTAAAGGCATGTCTTTGTG ATGTTATTTCTATTATTGCAGGTATTTGTTGATGTGGGTGCTGGTGGGTGTGTGTGTTTGCGTGAGCATTGCTTTTTTTT TTTTGCTGTTGAGTTTGAATGGTGCATGTTTTTAGGGTCTGCCAATGCCCTGTCTTAGCGATGTTTTAATTATAATTACA GGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGTGCGCACGCAATACTGCATTTTATAGTGTCTGCAGAAGCCTG TCTTTGTGATGTTTTTGTTTTATTGCCTTGTTCTTAGTCTGTGTTTTTTGTTATTGGGTGTTAATGCTGCGTGTTTATAG TGTCTATACATGCCTGTCTTTAAGACCTGATGTTTTTGTTTATCGCAGGTATTTAAGTATTGGGGGTGGTGTGTGTACCG CTGCTGTGCATGTTGTTATTGAGTGTGAATTGTGCCTGTTTACAGTGTCTTCAAATGCCTCTCTCATTGATGTTTTTTTG TTTAAGTGCGGTGTTTGATGTTGTTGGTGGTAGTGATGGAGTGTGTTACAATATTGTGTTTGAATGCTTATTAGTTTTAG AATCTGAAAATGAACATGTCAGTGTTTTTTATTTTTAAAATTGCAGTGTGTTGTTATATTGTGTTTGGATGCTGAATGTT TGTAGTATCTGCAAATGCACATGTCAGTGATGTTTTTGTTTATTTCAGTGTGTTTTTTGTTATTGAGTTTGAATGGTGCA TATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTTTTTTGTTTATTGCAGGTCCAGTTGCTGAGGACATGTTCCAC TGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGA TTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCATTATTATGGTGTGATAATAGCTGAGAATTTTGAGGCGTTCAG TTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTATCTCAACCAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAA CATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTTTGGC TTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTGTCTGGTTATTGTTTGTGCATTGAAATTGGTAAATTTACTTT TAAATAGGTTTTATCATTTTCCTCTTTTATTTGTTTTTAGGGGTGTGATTATTGTATATTGAAATAGTTTAACTTTGAAA AAATAATGATGGGTATGGTATAATCTAGGCTAATTTAAATCATCTAAGTTCTTCTTTGTTGCTATAATTGTTAGATATTT TCATGTTGTTTAGATTTGTTGTGATTGAATTTGGATTTTTTTCATGAAAATTTTGAATTATAAGCTTTTATGACGCCCAA AAATCACTTTTAAGTTTTTACTCAGGGAATGTATTGTCTGTGAAGGCTGAACTTTATATCCTTAAATTCAAGATATTATT GAATATAGTAGTCTCTAGCGAGTGGTGTCTCGTTGCAGCTGGTGTCTGCTCTTTCATTCTTGTCATGTTGTGTTTCTGTT GCGACTGCTGTAGCGTGCCGGAAATTGCAGCCTTTCCGAGAGTTTTGGCTGCTATTGTGAAATTGGGGAGAACCTGTGTA TAAACCTTCAAATTCTAACATTAAACAGGCTATTTGTTCGTTCCTCTCACTGTCTTAATATCTTCATTTGACCGAAACCT GTCAGACCTCTGCTCACCAGCAAGATTCTGGCTACGTGTAGTTTTCAGCTATGCTGCACTTTCTGGCCACCAGCCCTACT TTTTCAGCCAAATATTTTTTTTCTTTGACTTTTCACTTTCCTCCAGGAATTACTTCTGTTTTGTGGGCATTTCTTTGTTC TCTCCTACTATCCTGAGTTTTTTTCCTGCTTTTAATGTCTTTTAAAATAGAGACTAAACTAATTAGGTGGTAAAATGAAA AAACCATTGAGACTACTAGTTCTAATTTTGTAGGATAACAAGACTGAGACTTTTAGCTGTGTCTGGTTGGTCTACCTACT GTCGAGTGTCATCTTGATTAGATGGTGGGGTAGAATATTTTTTAATGGTGCAGCCCGGTTGGTATGGCCTACGTTGCATG AATTTTGTTTCTGCTATTGGTAATTGTCCTCCTTAATATGTTGTGTAAGAATTTGAAATCTTGTTTTCAAGAATGAACAT GTCTTTAGATTTTTTGTTCAATATATGATTAGTAGTTTTCTAAAATTGTTGTATGTGAGTGAAACTCATGTCTCATGCTG ATATTAAGAGGAATCCAGATAGTGAACTTTCTTATCGTGTTTTGTTTGGCATACCAGGTACTGCTTTCGATCTGCTCACT GCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGG CCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0458700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTTGCATTTAGGACTAAGGTCTT TCACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAA AGGTACTGCTTTCGATCTGCTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTAC AAAACCGACCGGGCCAAGTACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0458700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFHWQATIMGPADSPYAGGVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY KTDRAKYEATARSWTQKYAMG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24068
1 20 20 1.3E-61 –
Gene3D
G3DSA:3.10.110.10
1 101 101 1.1E-40
IPR016135
SUPERFAMILY
SSF54495
1 100 100 3.39E-40
IPR016135
PANTHER
PTHR24068:SF205
1 20 20 1.3E-61 –
SMART
SM00212
1 100 100 1.1E-33 –
CDD
cd00195
1 95 95 1.25408E-45
IPR000608
ProSiteProfiles
PS50127
4 89 86 26.892
IPR000608
Pfam
PF00179
20 94 75 1.8E-27
IPR000608
PANTHER
PTHR24068
20 100 81 1.3E-61 –
PANTHER
PTHR24068:SF205
20 100 81 1.3E-61 –
ProSitePatterns
PS00183
27 42 16 -
IPR023313

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0458700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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