Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0458700 |
| Transcript ID | LotjaGi1g1v0458700.7 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96213682..96216483) extracted from Lotus japonicus Gifu genome v1.2.
TCCCGATTTTTGTCCAGATCTGAAAGCGCTACCTCGAATTCATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTG CAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTACCCTTTTCTTAATTTTACCTCAATCGAGCATGTGGATATGGTTTTT TTTTGTTAGATGATACGGTTGCTTGGTGTGATTTCGTTGTTGGTGGTGGTGATTTTGTGTGTTGTTTTGCTGATATTGGA TGCTGCATATTTTTAGCGTCTGCTAAAGGCATGTCTTTGTGATGTTATTTCTATTATTGCAGGTATTTGTTGATGTGGGT GCTGGTGGGTGTGTGTGTTTGCGTGAGCATTGCTTTTTTTTTTTTGCTGTTGAGTTTGAATGGTGCATGTTTTTAGGGTC TGCCAATGCCCTGTCTTAGCGATGTTTTAATTATAATTACAGGTATCTGTTGTTGTGGGTGGTGGTGGGTGTACGTGTGT GCGCACGCAATACTGCATTTTATAGTGTCTGCAGAAGCCTGTCTTTGTGATGTTTTTGTTTTATTGCCTTGTTCTTAGTC TGTGTTTTTTGTTATTGGGTGTTAATGCTGCGTGTTTATAGTGTCTATACATGCCTGTCTTTAAGACCTGATGTTTTTGT TTATCGCAGGTATTTAAGTATTGGGGGTGGTGTGTGTACCGCTGCTGTGCATGTTGTTATTGAGTGTGAATTGTGCCTGT TTACAGTGTCTTCAAATGCCTCTCTCATTGATGTTTTTTTGTTTAAGTGCGGTGTTTGATGTTGTTGGTGGTAGTGATGG AGTGTGTTACAATATTGTGTTTGAATGCTTATTAGTTTTAGAATCTGAAAATGAACATGTCAGTGTTTTTTATTTTTAAA ATTGCAGTGTGTTGTTATATTGTGTTTGGATGCTGAATGTTTGTAGTATCTGCAAATGCACATGTCAGTGATGTTTTTGT TTATTTCAGTGTGTTTTTTGTTATTGAGTTTGAATGGTGCATATTTGTGGTATCTGCAAGTTCTTGTCTAAGTGATTGTT TTTTGTTTATTGCAGGTCCAGTTGCTGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATAT GCTGGAGGTGTATTTCTTGTTACTATTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTAATGTCTATAACCAT TATTATGGTGTGATAATAGCTGAGAATTTTGAGGCGTTCAGTTGTTTCTTAAATGGAATGAAAATATCTAACGACCTTAT CTCAACCAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGCAACGGTAGCATTTGTCTTGATATCCTGAA GGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTTTGGCTTTCTTTCCCTCCAATTTTTGGGGTTGTGTGGGGCTCTG TCTGGTTATTGTTTGTGCATTGAAATTGGTAAATTTACTTTTAAATAGGTTTTATCATTTTCCTCTTTTATTTGTTTTTA GGGGTGTGATTATTGTATATTGAAATAGTTTAACTTTGAAAAAATAATGATGGGTATGGTATAATCTAGGCTAATTTAAA TCATCTAAGTTCTTCTTTGTTGCTATAATTGTTAGATATTTTCATGTTGTTTAGATTTGTTGTGATTGAATTTGGATTTT TTTCATGAAAATTTTGAATTATAAGCTTTTATGACGCCCAAAAATCACTTTTAAGTTTTTACTCAGGGAATGTATTGTCT GTGAAGGCTGAACTTTATATCCTTAAATTCAAGATATTATTGAATATAGTAGTCTCTAGCGAGTGGTGTCTCGTTGCAGC TGGTGTCTGCTCTTTCATTCTTGTCATGTTGTGTTTCTGTTGCGACTGCTGTAGCGTGCCGGAAATTGCAGCCTTTCCGA GAGTTTTGGCTGCTATTGTGAAATTGGGGAGAACCTGTGTATAAACCTTCAAATTCTAACATTAAACAGGCTATTTGTTC GTTCCTCTCACTGTCTTAATATCTTCATTTGACCGAAACCTGTCAGACCTCTGCTCACCAGCAAGATTCTGGCTACGTGT AGTTTTCAGCTATGCTGCACTTTCTGGCCACCAGCCCTACTTTTTCAGCCAAATATTTTTTTTCTTTGACTTTTCACTTT CCTCCAGGAATTACTTCTGTTTTGTGGGCATTTCTTTGTTCTCTCCTACTATCCTGAGTTTTTTTCCTGCTTTTAATGTC TTTTAAAATAGAGACTAAACTAATTAGGTGGTAAAATGAAAAAACCATTGAGACTACTAGTTCTAATTTTGTAGGATAAC AAGACTGAGACTTTTAGCTGTGTCTGGTTGGTCTACCTACTGTCGAGTGTCATCTTGATTAGATGGTGGGGTAGAATATT TTTTAATGGTGCAGCCCGGTTGGTATGGCCTACGTTGCATGAATTTTGTTTCTGCTATTGGTAATTGTCCTCCTTAATAT GTTGTGTAAGAATTTGAAATCTTGTTTTCAAGAATGAACATGTCTTTAGATTTTTTGTTCAATATATGATTAGTAGTTTT CTAAAATTGTTGTATGTGAGTGAAACTCATGTCTCATGCTGATATTAAGAGGAATCCAGATAGTGAACTTTCTTATCGTG TTTTGTTTGGCATACCAGGTACTGCTTTCGATCTGCTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGA GATTGCTCACATGTACAAAACCGACCGGGCCAAGTACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCT GA
CDS sequence (LotjaGi1g1v0458700.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGCGCATCCTCAAGGAGTTGAAGGACTTGCAGAAAGACCCGCCTACTTCTTGCAGCGCCGGTCCAGTTGC TGAGGACATGTTCCACTGGCAAGCGACAATTATGGGTCCTGCTGACAGTCCATATGCTGGAGGTGTATTTCTTGTTACTA TTCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTTCACCCGAACATCAATAGC AACGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCGCTTACCATCTCAAAGGTACTGCTTTCGATCTG CTCACTGCTGACTGATCCAAACCCTGATGACCCGCTTGTGCCAGAGATTGCTCACATGTACAAAACCGACCGGGCCAAGT ACGAGGCCACTGCTCGCAGCTGGACCCAGAAATATGCCATGGGCTGA
Protein sequence (LotjaGi1g1v0458700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 2.4E-99 | – | |
| PANTHER | 1 | 147 | 147 | 2.4E-99 | – | |
| Gene3D | 1 | 148 | 148 | 1.7E-75 | ||
| SUPERFAMILY | 2 | 147 | 146 | 1.09E-66 | ||
| CDD | 3 | 142 | 140 | 3.40877E-76 | ||
| SMART | 4 | 147 | 144 | 3.3E-81 | – | |
| ProSiteProfiles | 4 | 136 | 133 | 48.77 | ||
| Pfam | 5 | 141 | 137 | 5.6E-54 | ||
| ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0458700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…