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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000640
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We have found 51 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.746s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
4 domain predictions
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Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
3 domain predictions
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Lj0g3v0341909.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Cicer arietinum] gi|502166590|ref|XP_004513932.1| chr0 179235132 179238892 -
4 domain predictions
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Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
4 domain predictions
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Lj1g3v1380860.1
n.a. PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| chr1 16656786 16667427 -
4 domain predictions
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Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
4 domain predictions
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Lj1g3v4647640.1
n.a. n.a. chr1 55242751 55247465 -
4 domain predictions
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Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
4 domain predictions
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Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
4 domain predictions
 –
Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
4 domain predictions
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Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
4 domain predictions
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Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
4 domain predictions
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Lj5g3v0890580.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] gi|356500497|ref|XP_003519068.1| chr5 13167757 13175554 -
4 domain predictions
 –
LotjaGi0g1v0000300.1
n.a. Elongation factor 4; TAIR: AT5G13650.1 elongation factor family protein; Swiss-Prot: sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog; TrEMBL-Plants: tr|A0A0L9TVK2|A0A0L9TVK2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000300 LjG1.1_chr0 1134471 1142062 +
3 domain predictions
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LotjaGi1g1v0321400.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214048 77219779 +
3 domain predictions
 –
LotjaGi1g1v0321400.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214237 77219587 +
3 domain predictions
 –
LotjaGi1g1v0321400.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216023 77219294 +
3 domain predictions
 –
LotjaGi1g1v0321400.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216036 77219294 +
3 domain predictions
 –
LotjaGi1g1v0321400.6
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216831 77219294 +
3 domain predictions
 –
LotjaGi1g1v0327700.1
n.a. Elongation factor 4; TAIR: AT5G08650.1 Small GTP-binding protein; Swiss-Prot: sp|A5B4D2|GUFP_VITVI Translation factor GUF1 homolog, chloroplastic; TrEMBL-Plants: tr|A0A0S3REW3|A0A0S3REW3_PHAAN Translation factor GUF1 homolog, chloroplastic; Found in the gene: LotjaGi1g1v0327700 LjG1.1_chr1 78214008 78224219 -
3 domain predictions
 –
LotjaGi1g1v0500000.1
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101609246 101619224 -
2 domain predictions
 –
LotjaGi1g1v0500000.3
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101613453 101619116 -
2 domain predictions
 –
LotjaGi1g1v0500000.4
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101613750 101619123 -
2 domain predictions
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LotjaGi1g1v0500000.5
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101615093 101619053 -
2 domain predictions
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LotjaGi1g1v0600400.2
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473527 114505407 +
3 domain predictions
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LotjaGi1g1v0600400.3
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
3 domain predictions
 –
LotjaGi1g1v0600400.4
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
3 domain predictions
 –
LotjaGi1g1v0600400.5
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
3 domain predictions
 –
LotjaGi1g1v0600400.6
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
3 domain predictions
 –
LotjaGi1g1v0645600.1
n.a. Elongation factor; TAIR: AT3G22980.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q7Z2Z2|EFL1_HUMAN Elongation factor-like GTPase 1; TrEMBL-Plants: tr|A0A0L9UTQ7|A0A0L9UTQ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0645600 LjG1.1_chr1 120262046 120268867 -
3 domain predictions
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LotjaGi1g1v0645600.2
n.a. Elongation factor; TAIR: AT3G22980.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q7Z2Z2|EFL1_HUMAN Elongation factor-like GTPase 1; TrEMBL-Plants: tr|A0A0L9UTQ7|A0A0L9UTQ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0645600 LjG1.1_chr1 120262115 120268822 -
3 domain predictions
 –
LotjaGi3g1v0139100.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18293635 18297865 +
3 domain predictions
 –
LotjaGi3g1v0139100.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18294169 18297315 +
3 domain predictions
 –
LotjaGi3g1v0139100.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18294847 18297315 +
3 domain predictions
 –
LotjaGi3g1v0244900.1
n.a. Elongation factor 4; TAIR: AT2G31060.2 elongation factor family protein; Swiss-Prot: sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog; TrEMBL-Plants: tr|A0A0S3SB66|A0A0S3SB66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0244900 LjG1.1_chr3 40006738 40020070 -
2 domain predictions
 –
LotjaGi3g1v0244900.2
n.a. Elongation factor G; TAIR: AT2G31060.1 elongation factor family protein; Swiss-Prot: sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog; TrEMBL-Plants: tr|A0A151TP89|A0A151TP89_CAJCA GTP-binding protein TypA/BipA isogeny; Found in the gene: LotjaGi3g1v0244900 LjG1.1_chr3 40008356 40017113 -
2 domain predictions
 –
LotjaGi3g1v0370000.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657630 75661480 -
3 domain predictions
 –
LotjaGi3g1v0370000.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660330 -
3 domain predictions
 –
LotjaGi3g1v0370000.3
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660842 -
3 domain predictions
 –
LotjaGi3g1v0370000.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660930 -
3 domain predictions
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LotjaGi3g1v0370300.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75901874 75905775 -
3 domain predictions
 –
LotjaGi3g1v0370300.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75904813 -
3 domain predictions
 –
LotjaGi3g1v0370300.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905310 -
3 domain predictions
 –
LotjaGi3g1v0370300.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905339 -
3 domain predictions
 –
LotjaGi3g1v0370300.6
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1MJ86|I1MJ86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905517 -
3 domain predictions
 –
LotjaGi4g1v0209900.1
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A151SKP1|A0A151SKP1_CAJCA Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48730360 48736399 -
3 domain predictions
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LotjaGi4g1v0209900.2
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735402 -
3 domain predictions
 –
LotjaGi4g1v0209900.3
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735687 -
3 domain predictions
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LotjaGi4g1v0209900.4
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735687 -
3 domain predictions
 –
LotjaGi4g1v0282200.1
n.a. Elongation factor like protein; TAIR: AT1G06220.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9LNC5|CLO_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO; TrEMBL-Plants: tr|G7JHS5|G7JHS5_MEDTR Elongation factor EF-Tu-like protein; Found in the gene: LotjaGi4g1v0282200 LjG1.1_chr4 65338422 65344085 -
3 domain predictions
 –