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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0569300 |
| Transcript ID | LotjaGi1g1v0569300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine proteinase; TAIR: AT4G35350.1 xylem cysteine peptidase 1; Swiss-Prot: sp|O65493|XCP1_ARATH Cysteine protease XCP1; TrEMBL-Plants: tr|I1K796|I1K796_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110228376..110230421) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCTTGTGCACCGAAATAAATATACTAGTATTAATTAAATCAAGCACTATATCTATCTTGAGCTGCATAATTAAGGC ATGTGATTTTATGCTTTGGTGTAAAGCTACCTGAAAGAACATACTTAAAGACTACTCAGTAGAATACCAATCCCAACAAA CTTAACTTGAAAGTAACATCCAAAACATAACCTATAAATACTACTCCCTCTCCCCATTCTTCCTCACCCCTTCTCACATT AATTCTTCTCTTCTATTCACAATCCAATAACAACAATTGCCATGGCTTTTTCACCCTCCTCCAAAACACTTCTCCTAGCA TGCTCCTTATGCATGTTTGTGTGTCTAGCTTTTGGACGCGATTTTTCCATTGTGGGCTATTCATCAGAGGACTTAAAGTC CATGGATAAGCTGATTGAACTCTTTGAGTCATGGATGTCAAGACATGGCAAAATTTATGAGAGCATTGAGGAAAAGCTGC TCAGGTTTGAGATTTTCAAGGATAATTTGAAGCACATTGATGAGACAAACAAGGTGGTCAGCAACTACTGGCTTGGGTTG AATGAGTTTGCTGATTTGAGCCACCATGAGTTCAAGAAGCAGTACCTGGGGCTCAAGGTTGATTTCTCTACTAGGAGAGA ATCATCAGAGGAATTCACTTACAGAGATGTTGATCTGCCAAAGTCAGTGGATTGGAGAAAGAAAGGTGCTGTAACAAATA TCAAGAATCAAGGTTCATGTGGTAAGTATATAAATACCAATGTCTACTTATAGCATATCTAGATCAGCTTATTTTTCTGG ATTGGCAGGGAACCTGAGAATCAATTCTAATTGAGTGAAATCAATTTGGATGACAATATAGATGTTTGAGAGTTATTTTG GATAATTTGATTTGATGCAATGCAACTCAACTGGTGAAAGATGAATCTGCTATAATATTGACCATGATTCCATGAACTTG CAGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCGGTTGAGGGAATAAACCAAATTGTGACAGGAAACTTGACATCTTTG TCCGAGCAAGAGTTAATTGACTGTGACAGAACTTACAACAGTGGCTGCAATGGGGGTCTCATGGACTATGCATTCTCCTT CATTGTTGAAAATGGTGGACTCCATAAAGAGGACGATTATCCTTACATTATGGAGGAAGGAACTTGCGAGATGAGCAAGG TAATTAATTATCCTGCAACAATAAAAACAAAATCAATTCTGAAAAAAGCTGATTCAAACATGTTATAAGCTAATATAGTG TAATAAATAATTGAACTGATTCCTCAATATCATGTTTTACTTCTTGTTCTGCCACTGCCAGGAAGAGAGCCAAGTTGTCA CCATTAGTGGGTATCATGATGTGCCACAAAACAATGAACAGAGCCTATTGAAGGCACTTGCAAACCAACCCCTCAGTGTG GCCATAGAAGCTTCAGGCAGAGATTTCCAGTTTTATAGTGGGGTATGTTGAATTAAATTATAAGCTATAGTAGTTCTATG TGACATTCATGATTTTTTTTAATTGGAGAAACTAATCTTAATAAGATTTGTTTGACAAAATTGATTACCATATTTGTAGG GTGTTTTTGATGGGCACTGTGGAACTCAACTAGATCATGGTGTAGCAGCTGTTGGATATGGGACATCAAAAGGCTTGGAC TATATCACAGTGAAAAATTCATGGGGAACAAAGTGGGGAGAGAAAGGATACATAAGGTTTAGGAGAAACAATGGAAAGCC TGAAGGGATGTGTGGACTCTACAAGATGGCTTCTTATCCCACTAAGAAGAAATAAGACTCTATTGCTATATTGTGTGTGA ATTTCTTTCATTTTCCCATTTCTACCAATTCTCCATTGAATACCGTGATCATATTTTCCTTTCAAGCAATGTAATGTTGT TTTCCATGTAATAACATTCAGTAATTTGAATTTGATGTACCCAAACAAATATATACCTCTAGTCATTTGCAATTTTCAAT CTTACCTTTTTTCTCTATAATGCATGGTTAAGTGATTGGTGTATTT
CDS sequence (LotjaGi1g1v0569300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTTCACCCTCCTCCAAAACACTTCTCCTAGCATGCTCCTTATGCATGTTTGTGTGTCTAGCTTTTGGACGCGA TTTTTCCATTGTGGGCTATTCATCAGAGGACTTAAAGTCCATGGATAAGCTGATTGAACTCTTTGAGTCATGGATGTCAA GACATGGCAAAATTTATGAGAGCATTGAGGAAAAGCTGCTCAGGTTTGAGATTTTCAAGGATAATTTGAAGCACATTGAT GAGACAAACAAGGTGGTCAGCAACTACTGGCTTGGGTTGAATGAGTTTGCTGATTTGAGCCACCATGAGTTCAAGAAGCA GTACCTGGGGCTCAAGGTTGATTTCTCTACTAGGAGAGAATCATCAGAGGAATTCACTTACAGAGATGTTGATCTGCCAA AGTCAGTGGATTGGAGAAAGAAAGGTGCTGTAACAAATATCAAGAATCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCC ACTGTTGCAGCGGTTGAGGGAATAAACCAAATTGTGACAGGAAACTTGACATCTTTGTCCGAGCAAGAGTTAATTGACTG TGACAGAACTTACAACAGTGGCTGCAATGGGGGTCTCATGGACTATGCATTCTCCTTCATTGTTGAAAATGGTGGACTCC ATAAAGAGGACGATTATCCTTACATTATGGAGGAAGGAACTTGCGAGATGAGCAAGGAAGAGAGCCAAGTTGTCACCATT AGTGGGTATCATGATGTGCCACAAAACAATGAACAGAGCCTATTGAAGGCACTTGCAAACCAACCCCTCAGTGTGGCCAT AGAAGCTTCAGGCAGAGATTTCCAGTTTTATAGTGGGGGTGTTTTTGATGGGCACTGTGGAACTCAACTAGATCATGGTG TAGCAGCTGTTGGATATGGGACATCAAAAGGCTTGGACTATATCACAGTGAAAAATTCATGGGGAACAAAGTGGGGAGAG AAAGGATACATAAGGTTTAGGAGAAACAATGGAAAGCCTGAAGGGATGTGTGGACTCTACAAGATGGCTTCTTATCCCAC TAAGAAGAAATAA
Protein sequence (LotjaGi1g1v0569300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSPSSKTLLLACSLCMFVCLAFGRDFSIVGYSSEDLKSMDKLIELFESWMSRHGKIYESIEEKLLRFEIFKDNLKHID ETNKVVSNYWLGLNEFADLSHHEFKKQYLGLKVDFSTRRESSEEFTYRDVDLPKSVDWRKKGAVTNIKNQGSCGSCWAFS TVAAVEGINQIVTGNLTSLSEQELIDCDRTYNSGCNGGLMDYAFSFIVENGGLHKEDDYPYIMEEGTCEMSKEESQVVTI SGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGTQLDHGVAAVGYGTSKGLDYITVKNSWGTKWGE KGYIRFRRNNGKPEGMCGLYKMASYPTKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 10 | 348 | 339 | 1.7E-185 | – | |
| PANTHER | 10 | 348 | 339 | 1.7E-185 | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 350 | 325 | - | – | |
| Gene3D | 27 | 349 | 323 | 8.8E-117 | – | |
| SUPERFAMILY | 43 | 347 | 305 | 1.22E-110 | ||
| Pfam | 48 | 104 | 57 | 2.0E-18 | ||
| SMART | 48 | 104 | 57 | 1.0E-24 | ||
| SMART | 132 | 347 | 216 | 1.9E-118 | ||
| Pfam | 132 | 347 | 216 | 4.5E-80 | ||
| CDD | 133 | 346 | 214 | 1.30996E-111 | ||
| PRINTS | 150 | 165 | 16 | 1.0E-7 | ||
| ProSitePatterns | 150 | 161 | 12 | - | ||
| ProSitePatterns | 290 | 300 | 11 | - | ||
| PRINTS | 292 | 302 | 11 | 1.0E-7 | ||
| ProSitePatterns | 307 | 326 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi1g1v0569300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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