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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0571900 |
| Transcript ID | LotjaGi1g1v0571900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor protein kinase family protein; TAIR: AT5G23400.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1; TrEMBL-Plants: tr|A0A151TFX7|A0A151TFX7_CAJCA Putative LRR receptor-like serine/threonine-protein kinase family; Found in the gene: LotjaGi1g1v0571900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110549198..110551129) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTATCAGCTGCTACAAATAGTGGCATTTCTGACAGTGATAGCATTTGGAGGAGGCATAAAGAGAACATCAGCAGA AGCATGCAGTTCAAATGACTTGGAAGGTTTGATAGGCTTCAAGAATGGAATTCAGATGGATACTTCTGGTCGTTTGGCAA AGTGGGTTGGTAGTAGCTGCTGTGAGTGGGAAGGCATTGTCTGTGAAAATGCAACCACTAGAGTGACACAGATCCATCTT CCAGGGTTCATAGAGAAAGACTTGTTTCAAACTCAGATGATGGGTAAGCTTTCTCCTTCCATAACACTCCTCACTTCTCT TGTAATACTTGACCTTGGTGGTTTAGTAGGTCTCAGTGGGATAATTCCACAAACAATTGGTGTGCAAATGCCAAACCTCC AAAAGCTCTACCTTTTTGGCAACAATTTAACTGGTCTAATACCAGAAAGCATTGGTGAGTTACCAAACCTACAAGAACTT GCGCTGCATGAAAATAAGATATCCGGGTCGATCCCTTCTAGCATTGGAAGCTTAAAAAGCCTCAAAAGTTTGCTGCTTTA TTCAAATAAAATTTCAGGTACAATACCCATTTCACTTGGGAATTTGACAAATTTGGTTGAATTGGATGTTCATGACAATG CTCTTAATGGTGATATCCCCAACAGCATTGGTCAGATGCAGGCTCTGGAAAAGCTTGATCTTTCAAGCAATTCACTAAGT GGGAACATACCTACTTCACTATCCAATTTAAGTGCAATTTCAGTTTTGTATATGGACACAAACTCTCTTGAGGGAACCAT TCCATTTCCCTCAAGACCAGGTGAAATGCCATCTCTTGGCTTCTTAAGACTCCATGATAACCATCTTAATGGAAATATAC CTCCTAGTCTTGTTTACCTGGTTTCTCTTCAGAGAGTTTCACTATCAAACAACAAACTTGAAGGAGCTTTGCCTTCAAGT TTGGGCAATTTGCTTTCTTTGACAGAACTTTACCTAAGTGGCAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCA ACTTTCTCAGCTCATGATGTTGAACATTTCTAACAATTTGATTGAAGGGCCATTGCCTCAAGAAATTTCTTCCCTACACA ATCTCCAAACACTTGATCTTTCTTTCAACCCTCTGGACCTCTCTTCCTTCCCAGAATGGCTACCAAATCTGCCATCGCTT TCGCGCATTCACTTCGCAGGATGCGGTATCCAGGGAAAAATTCCAGACATTCTGCAAACAACCCTCAGTCCAATACAGGA ACTAGACTTATCAGTGAACCTTCTCACTGGAACCATACCATCATGGATAGGATCCCTCAGTCAGCTCTACTTGCTAAATC TCTCAAGGAACTCACTTGATTCACACATTCCTGATTCTGTTACAAGCTTGTCTGATCTGGGAGTTCTTGATCTTCACTCA AATAAGTTAACAGGCTCCATAACTGGAGCATTTGATATCGAACAAGGTACTTCCGGGGGATCACTAACATATATTGATCT TTCTGATAACAACTTCTCAATTGGAGTTGAGGAAATTGGTGCAGGAAAGCAGGTCCATATTCAATTTCTGAATTTGTCTC ATAACCTTCTGAAGGGTACATTGCCAAGTTCCCTTGGGAAATTGAATTCCATTCACAGTTTGGATTTGAGCTTCAATGAT TTAGCCTCCAACTTGCCAGCAGTGTTGGCAAACTTGACATTGTTGGAGAGACTGAAGCTGCAAAGAAACCATTTCAGTGG CAATATACCCAATGGACTTCTCAAGTTGACAAAGCTGAAGGAACTGGATTTATCAGACAATGTGCTTCAAGGGAAAATCC CAGAGGGTAAACCACTAACTGACTTTCCTGGGAGTTCTTATTCTGGAAACAAAGGTTTGTGTGGGAAGCCACTCAGTCCT TGTTAACTTTGA
CDS sequence (LotjaGi1g1v0571900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCAGCTGCTACAAATAGTGGCATTTCTGACAGTGATAGCATTTGGAGGAGGCATAAAGAGAACATCAGCAGA AGCATGCAGTTCAAATGACTTGGAAGGTTTGATAGGCTTCAAGAATGGAATTCAGATGGATACTTCTGGTCGTTTGGCAA AGTGGGTTGGTAGTAGCTGCTGTGAGTGGGAAGGCATTGTCTGTGAAAATGCAACCACTAGAGTGACACAGATCCATCTT CCAGGGTTCATAGAGAAAGACTTGTTTCAAACTCAGATGATGGGTAAGCTTTCTCCTTCCATAACACTCCTCACTTCTCT TGTAATACTTGACCTTGGTGGTTTAGTAGGTCTCAGTGGGATAATTCCACAAACAATTGGTGTGCAAATGCCAAACCTCC AAAAGCTCTACCTTTTTGGCAACAATTTAACTGGTCTAATACCAGAAAGCATTGGTGAGTTACCAAACCTACAAGAACTT GCGCTGCATGAAAATAAGATATCCGGGTCGATCCCTTCTAGCATTGGAAGCTTAAAAAGCCTCAAAAGTTTGCTGCTTTA TTCAAATAAAATTTCAGGTACAATACCCATTTCACTTGGGAATTTGACAAATTTGGTTGAATTGGATGTTCATGACAATG CTCTTAATGGTGATATCCCCAACAGCATTGGTCAGATGCAGGCTCTGGAAAAGCTTGATCTTTCAAGCAATTCACTAAGT GGGAACATACCTACTTCACTATCCAATTTAAGTGCAATTTCAGTTTTGTATATGGACACAAACTCTCTTGAGGGAACCAT TCCATTTCCCTCAAGACCAGGTGAAATGCCATCTCTTGGCTTCTTAAGACTCCATGATAACCATCTTAATGGAAATATAC CTCCTAGTCTTGTTTACCTGGTTTCTCTTCAGAGAGTTTCACTATCAAACAACAAACTTGAAGGAGCTTTGCCTTCAAGT TTGGGCAATTTGCTTTCTTTGACAGAACTTTACCTAAGTGGCAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCA ACTTTCTCAGCTCATGATGTTGAACATTTCTAACAATTTGATTGAAGGGCCATTGCCTCAAGAAATTTCTTCCCTACACA ATCTCCAAACACTTGATCTTTCTTTCAACCCTCTGGACCTCTCTTCCTTCCCAGAATGGCTACCAAATCTGCCATCGCTT TCGCGCATTCACTTCGCAGGATGCGGTATCCAGGGAAAAATTCCAGACATTCTGCAAACAACCCTCAGTCCAATACAGGA ACTAGACTTATCAGTGAACCTTCTCACTGGAACCATACCATCATGGATAGGATCCCTCAGTCAGCTCTACTTGCTAAATC TCTCAAGGAACTCACTTGATTCACACATTCCTGATTCTGTTACAAGCTTGTCTGATCTGGGAGTTCTTGATCTTCACTCA AATAAGTTAACAGGCTCCATAACTGGAGCATTTGATATCGAACAAGGTACTTCCGGGGGATCACTAACATATATTGATCT TTCTGATAACAACTTCTCAATTGGAGTTGAGGAAATTGGTGCAGGAAAGCAGGTCCATATTCAATTTCTGAATTTGTCTC ATAACCTTCTGAAGGGTACATTGCCAAGTTCCCTTGGGAAATTGAATTCCATTCACAGTTTGGATTTGAGCTTCAATGAT TTAGCCTCCAACTTGCCAGCAGTGTTGGCAAACTTGACATTGTTGGAGAGACTGAAGCTGCAAAGAAACCATTTCAGTGG CAATATACCCAATGGACTTCTCAAGTTGACAAAGCTGAAGGAACTGGATTTATCAGACAATGTGCTTCAAGGGAAAATCC CAGAGGGTAAACCACTAACTGACTTTCCTGGGAGTTCTTATTCTGGAAACAAAGGTTTGTGTGGGAAGCCACTCAGTCCT TGTTAA
Protein sequence (LotjaGi1g1v0571900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYQLLQIVAFLTVIAFGGGIKRTSAEACSSNDLEGLIGFKNGIQMDTSGRLAKWVGSSCCEWEGIVCENATTRVTQIHL PGFIEKDLFQTQMMGKLSPSITLLTSLVILDLGGLVGLSGIIPQTIGVQMPNLQKLYLFGNNLTGLIPESIGELPNLQEL ALHENKISGSIPSSIGSLKSLKSLLLYSNKISGTIPISLGNLTNLVELDVHDNALNGDIPNSIGQMQALEKLDLSSNSLS GNIPTSLSNLSAISVLYMDTNSLEGTIPFPSRPGEMPSLGFLRLHDNHLNGNIPPSLVYLVSLQRVSLSNNKLEGALPSS LGNLLSLTELYLSGNSLSGQIPKSIGQLSQLMMLNISNNLIEGPLPQEISSLHNLQTLDLSFNPLDLSSFPEWLPNLPSL SRIHFAGCGIQGKIPDILQTTLSPIQELDLSVNLLTGTIPSWIGSLSQLYLLNLSRNSLDSHIPDSVTSLSDLGVLDLHS NKLTGSITGAFDIEQGTSGGSLTYIDLSDNNFSIGVEEIGAGKQVHIQFLNLSHNLLKGTLPSSLGKLNSIHSLDLSFND LASNLPAVLANLTLLERLKLQRNHFSGNIPNGLLKLTKLKELDLSDNVLQGKIPEGKPLTDFPGSSYSGNKGLCGKPLSP C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 641 | 641 | 8.5E-174 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 641 | 641 | 8.5E-174 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| TMHMM | 4 | 21 | 18 | - | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Gene3D | 24 | 198 | 175 | 2.2E-43 | ||
| Phobius | 27 | 641 | 615 | - | – | |
| Pfam | 31 | 68 | 38 | 5.6E-8 | ||
| SUPERFAMILY | 58 | 385 | 328 | 2.93E-60 | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| SMART | 130 | 153 | 24 | 28.0 | ||
| Pfam | 131 | 191 | 61 | 2.7E-10 | ||
| ProSiteProfiles | 132 | 155 | 24 | 6.056 | ||
| SMART | 154 | 178 | 25 | 8.3 | ||
| ProSiteProfiles | 156 | 178 | 23 | 6.634 | ||
| SMART | 178 | 199 | 22 | 180.0 | – | |
| ProSiteProfiles | 180 | 203 | 24 | 5.81 | ||
| SMART | 202 | 225 | 24 | 190.0 | ||
| SMART | 202 | 217 | 16 | 480.0 | – | |
| Gene3D | 203 | 270 | 68 | 5.3E-18 | ||
| ProSiteProfiles | 204 | 226 | 23 | 5.756 | ||
| Pfam | 204 | 263 | 60 | 1.6E-7 | ||
| SMART | 226 | 250 | 25 | 57.0 | ||
| SMART | 226 | 252 | 27 | 11.0 | – | |
| ProSiteProfiles | 228 | 251 | 24 | 6.711 | ||
| PRINTS | 229 | 242 | 14 | 2.4E-5 | – | |
| Gene3D | 271 | 352 | 82 | 1.9E-19 | ||
| ProSiteProfiles | 278 | 300 | 23 | 5.078 | ||
| SUPERFAMILY | 293 | 614 | 322 | 3.91E-48 | – | |
| SMART | 300 | 323 | 24 | 25.0 | ||
| ProSiteProfiles | 302 | 325 | 24 | 4.909 | ||
| SMART | 324 | 348 | 25 | 11.0 | ||
| SMART | 324 | 350 | 27 | 77.0 | – | |
| ProSiteProfiles | 326 | 348 | 23 | 6.372 | ||
| Pfam | 326 | 385 | 60 | 7.1E-10 | ||
| ProSiteProfiles | 350 | 372 | 23 | 5.024 | ||
| Gene3D | 354 | 641 | 288 | 1.6E-75 | ||
| SMART | 372 | 389 | 18 | 54.0 | – | |
| SMART | 372 | 397 | 26 | 30.0 | ||
| PRINTS | 372 | 385 | 14 | 2.4E-5 | – | |
| ProSiteProfiles | 374 | 394 | 21 | 7.019 | ||
| ProSiteProfiles | 424 | 446 | 23 | 4.739 | ||
| Pfam | 425 | 483 | 59 | 3.8E-7 | ||
| SMART | 446 | 469 | 24 | 100.0 | ||
| ProSiteProfiles | 448 | 470 | 23 | 5.702 | ||
| SMART | 470 | 493 | 24 | 78.0 | ||
| ProSiteProfiles | 472 | 494 | 23 | 5.248 | ||
| ProSiteProfiles | 501 | 523 | 23 | 4.747 | ||
| ProSiteProfiles | 526 | 548 | 23 | 5.448 | ||
| SMART | 548 | 571 | 24 | 280.0 | ||
| ProSiteProfiles | 550 | 573 | 24 | 5.402 | ||
| SMART | 572 | 596 | 25 | 96.0 | ||
| ProSiteProfiles | 574 | 597 | 24 | 4.801 | ||
| SMART | 596 | 619 | 24 | 63.0 | – | |
| ProSiteProfiles | 598 | 620 | 23 | 7.088 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0571900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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