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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0656500 |
| Transcript ID | LotjaGi1g1v0656500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|K7MY22|K7MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0656500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121611350..121615121) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCTTCAAATTTTGTAATCTTCTCTCATTTGCAATCTTCTCTTGTTCATATTCTCTCATTGTCTCACATTTGAATAA TTCATATAATGGATCCAAACAATTTACCCGACCGGGATACATTTTACAACGAATTGGTAGAGGATTTGATGCGAGAGGAG ATGGAGTTTTATCAACAACAAGCCAACACTGTTAGGCCCAAGCGAAGAAGAAGAAGAAGAGTGATAAAGCGAGATTGTGA AGCTGGCAACGATCAAAGAGGAAAAACACAATCATTCCAAGAGACAGCAAAAACAAAAGCCAAATCAGAAGCTGAGAATG CTTCTTCAAGCAAAATTGATATGTCAGCCATGGAAGAAGCTGCTGTGAGTGGAAGAAATGATGTAATGGAAAAAACTGCT TTAGAAAAGAGTTTGGAAAAGAATGACAACCTGATCAAGTGGCATGAAATCCTTATGAAGGACAAATCTAAGATGTCTGA GCAACAAAAAGCAGATCATGAGATCTGTTGTGATTTTATTAGGCGCCAGTTACGCACATTCGATGAACAAGATTCAAGTA CAAAATCTATTTCTATGTAATCTTTTAATTATTTGCTTCTTCCGGCTGTAGATCTTTGCTGTTTCGATTCTAGATTTGAA ATCGAAGTTTGTATTATACTTTTAAATTCTTAGGTTATAACTGTGTGTATTTTAATCATTCAGCTTTTTAATATTATATG AATATGAATGGTGGATAAAAGTGCTGAATCTGTGTTCCGCGTTTCAATTTTTTTAATGAAGACTCCCAAAGTCTTTGCCT AACGTTTCTCCTTTACATACCTGAACCCAGAACCCAAAATCTGTGAAAGCTAGAACCTGTTTGGTTTTGATTTGGAAAAA AATGGTGTATGGAGCAAGTTGTGCGTTGAGCTATGGAACCATTTGGCGTCAACCGACTCTTCATCTTCAATTCCATAGGT GCTCTTCACTCTCTTTCAACTTAAACTTCAACAACAACAAATTATCCACCTTCCCCTTCAACCGCTCTGGACCCTCACTC ACCCAGCTCAGCTTCCATGATTCTCGCCTCTCCGCACTCTCGAATGATGGTTCAGGCGGTACCGGTGGTGGTTCTGGTGG GTGGAATCCTGGCGATGGTGATGATGATGGCGTAGAAAAGTGGTCCTTCTTCCTATCATGGTAAACAAATATTTAAAAAG TAGAAATGATGCGTTTATTTTCATGTTCATGACTTCATCTTGTTTGTAACATACATGTTGGACATAAATCTGAATATACA CAACTAGATTTGCTTGGTTAAGTTTATTGAAATAACTTAAAACTCACCTATAAGCTCATTTAACCTTACCTTATAAAAGA AACTGGATTCGGCTATCGATAAGGACTTGTACATGCTTATAGAGGCTTTTGAGCTTATTGTAGCAAGTTTTTCAAATAAA CTTATAAGAGAGCAATAATTTTCTGTTGTTTATGTGTGCTTTTGTTTCTATTTATTTACAGTGGCGGGTAATTGAACTTT AATTTTACTCTACAATTCATTGCTTTCAGCGTTAGGAAGGAATTAGAACCTATGAAATCTCTCGCATCAGCTGCTTGTTG GGTGTTTGGATTTTACTGGTTTTTTGTGGGCGGCCAAGCAGCTATCGAAGATTGTCCAGATCTTTTATGGTAAGAACCTT AATTTGGATCTGCGTTTTCCTTTTTGTTTATAGGACAATTAGAATGAATGCCAAGAAAGCATATAATTGAAGTAGTTACA GATTTGTGCAACAGGATAACCTTCATTTTTATGTAAAACAGCAGTTTAAACAAGAATAGATTAAACTACTTGTGAATGTA GAGCTATAGAGTCTCAATGATCTGTTGAGCCCCTAAGTGTTAAAACTGAAAACTATCTGACTTACAGCTGTTCTTAACTA ACTAACAGGCACAGATATAATAAGATGCTCTCGAGTATAGCTTAGGCTCTATACTGCAATATCCTCCCTTAAGTTTAACT AGGGTGTGAGAGTGGATGTCAAGGGCTTGGTGAGAGTATCAGGAACTGGGTTGTAGTACGAGGAAACTGTGCTGACTGAT GAGGTTATGACAAAGTAATGAAGGAACAGCTCTAACAACCTTAAGCTCTTGTAGGAGAGGCTGAATCCAGAGAACATGAT TTGGTTCTGAGAGCTGAGAGCTGAGCTAAGCTTCTATATTCAGCCTCCGTAGAGTTGGTGACAATCATTTGGTTCTGAGA ACACCAACACCAAGAGATAAGATTGGAGCCTAAAAAAATGCAGGCACCAGTGATAGATTTGCAGTCATCTAGGACAATGG CCTAGTCCGCATCAGAGAAGCCCCAAATGTGAAGAGGGGATGTAGTTAGAGGATGCAGAAGAAGGCCACAGGACATAGTA CCTTTCAGATAACTCGCAATGTGCTTAACTCCAGTCCAATGAGAGTCCATGATATGTGCAGATAGAAGTCGCCTAATAAA AAGCTCCTATTTCTTGTCCGAGATAGTTAAAAAAGTAGTCTCTTGCTAGACCTGTCCAACCGGTTAAGCTTGGCTCTATT TTGTTGGAATTGGGGGGCCTCTTGTTGGGCCTGTTGATTAAGGCGGGGGCTTTCTCAAAATACTCACCTCAAGCCAGAAT AAATAGTATTATAATATTTTAGTAATTTACCAATGCAGTACTTGTTTATTTCATCTTCTGACATAAAAAGCTCTTATCTA ACATTATTCTGACTGTTATGTTTTCTAGTATAATTTAGGGTATTGTAGAGAACCATCAATGATGTTTTTATCACATTCGT GCAGGGTTATGATGGACTTTGTAGCCTATGATTTATTTTGTACTTACTTTTACATTGGGATGGCGGGTGTAGTTTTCTTT GCTATGATCCTAATTATAGCATTAGCTTATGCTAATGCTACAAGAATCAGAGAAGGTGCATCTGAAGAAGACATCAGGTC ACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCATTGATGACAATTGATGACAATATGGAGTCCAATGGAAGTCATACAA GTGAAATTTCTCTCCATCCAGATGATTCTGTGAGTACTGACTGTGTCTCCTTATATCTCCTTATTACTTCCTGAAAATTA CTCACCATGATTGATTGATTGCTGTTCGTGATACCATTGAAATACATTATCAAACTAAACTGCTTCTGATTATGTTGTAG GAATGCTGTATCTGCCTGTGTACATATGATGACGGAACAGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATTGTGA ATGCATCAGCCGATGGCTTCGGACTAAAGCAACCTGCCCGCTCTGCACATTAGATATACATGGAAGTAGCAGACTAGCAG GGTAGCAAGTCAATCTAATGGGATGGTTCAGCCTATTCAAGCCCATTCTATTTTTTTTCCATGATGGAAATAAAGTGTAC TATTTTTCTCACCTTCTATCCTGTTTTATTTTATTTTATTTCTAATGTGCATCTAATGTAAAATAGAACCTACATGTTCT GTTTGGTCTTATTCTAACCTGTATATCAAATGTTAGTTGAGTTAGTTATTCACACCTGCATAAGAGACAGAGTAAGTGAG TAACATTCTATTCCTCTCACTTCACAAGGAGATGACTGCATTTACTCTTCATTTCTTCAATGGTTTGTTCTCGTTGCTTA ACATGTGCATTATAACACAATGCACAATGGGGCAATTAAACATCCAAACGCATCATGTATAAAACTATGGCGGGATTGAT TCTAAATCAAAC
CDS sequence (LotjaGi1g1v0656500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATCTGTTGTGATTTTATTAGGCGCCAGTTACGCACATTCGATGAACAAGATTCAAAACCCAAAATCTGTGAAAGC TAGAACCTGTTTGGTTTTGATTTGGAAAAAAATGGTGTATGGAGCAAGTTGTGCGTTGAGCTATGGAACCATTTGGCGTC AACCGACTCTTCATCTTCAATTCCATAGGTGCTCTTCACTCTCTTTCAACTTAAACTTCAACAACAACAAATTATCCACC TTCCCCTTCAACCGCTCTGGACCCTCACTCACCCAGCTCAGCTTCCATGATTCTCGCCTCTCCGCACTCTCGAATGATGG TTCAGGCGGTACCGGTGGTGGTTCTGGTGGGTGGAATCCTGGCGATGGTGATGATGATGGCGTAGAAAAGTGGTCCTTCT TCCTATCATGCGTTAGGAAGGAATTAGAACCTATGAAATCTCTCGCATCAGCTGCTTGTTGGGTGTTTGGATTTTACTGG TTTTTTGTGGGCGGCCAAGCAGCTATCGAAGATTGTCCAGATCTTTTATGGGTTATGATGGACTTTGTAGCCTATGATTT ATTTTGTACTTACTTTTACATTGGGATGGCGGGTGTAGTTTTCTTTGCTATGATCCTAATTATAGCATTAGCTTATGCTA ATGCTACAAGAATCAGAGAAGGTGCATCTGAAGAAGACATCAGGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCA TTGATGACAATTGATGACAATATGGAGTCCAATGGAAGTCATACAAGTGAAATTTCTCTCCATCCAGATGATTCTGAATG CTGTATCTGCCTGTGTACATATGATGACGGAACAGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATTGTGAATGCA TCAGCCGATGGCTTCGGACTAAAGCAACCTGCCCGCTCTGCACATTAGATATACATGGAAGTAGCAGACTAGCAGGGTAG
Protein sequence (LotjaGi1g1v0656500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSVVILLGASYAHSMNKIQNPKSVKARTCLVLIWKKMVYGASCALSYGTIWRQPTLHLQFHRCSSLSFNLNFNNNKLST FPFNRSGPSLTQLSFHDSRLSALSNDGSGGTGGGSGGWNPGDGDDDGVEKWSFFLSCVRKELEPMKSLASAACWVFGFYW FFVGGQAAIEDCPDLLWVMMDFVAYDLFCTYFYIGMAGVVFFAMILIIALAYANATRIREGASEEDIRSLPKYRFSQSNS LMTIDDNMESNGSHTSEISLHPDDSECCICLCTYDDGTELYRLPCTHHFHCECISRWLRTKATCPLCTLDIHGSSRLAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 30 | 15 | - | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| Phobius | 52 | 147 | 96 | - | – | |
| PANTHER | 135 | 313 | 179 | 2.0E-76 | – | |
| PANTHER | 135 | 313 | 179 | 2.0E-76 | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 169 | 22 | - | – | |
| Phobius | 170 | 190 | 21 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 191 | 213 | 23 | - | – | |
| Gene3D | 211 | 312 | 102 | 9.3E-17 | ||
| Phobius | 214 | 319 | 106 | - | – | |
| SUPERFAMILY | 260 | 311 | 52 | 3.53E-17 | – | |
| CDD | 266 | 310 | 45 | 1.27907E-18 | – | |
| Pfam | 266 | 307 | 42 | 1.5E-11 | ||
| ProSiteProfiles | 267 | 308 | 42 | 11.678 | ||
| SMART | 267 | 307 | 41 | 2.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0656500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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