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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0680100 |
| Transcript ID | LotjaGi1g1v0680100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor U2af small subunit A-like protein; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|I3SLP5|I3SLP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124742313..124745758) extracted from Lotus japonicus Gifu genome v1.2.
TCAATAGAAAAAATTATAATTATAATAAAAAACAAAACATGTGAAAATGAAAAATAATTTAAATTAAAAAGCAGATCATG GGAATTACTATTAAATAATATAATATAAAGAGTGTTGGAGTCCAACCAACGAGTAGAAGAAGGAAAAACAAAAAGGGCAA AAAACGAAACTCGTCATCTCTATCTTTCTTTCTCTCTATCGTTCGTACAACCAAACCCTAATTTTAACCAGAAGAGAGAG AAACAAGAGAGAGAGAGAGAGTGTGCGATGGCGGAGCACTTGGCATCGATCTTCGGAACAGAGAAAGACAGAGTGAACTG CCCATTCTACTTCAAGATCGGAGCCTGCAGACACGGCGACCGTTGTTCTCGCCTTCACACCAAGCCTACCATCTCCCCCA CCCTCGTCCTCTCCAACATGTACCAGAGGCCTGACATGAATCTCAACATCATCACGCAGCCGAATCAGCCGCAGCATCAG CCTCAGCCTCTTGACCCTGACAAGCTTCAGGATCATTTTGATGATTTCTATGAAGATCTGTTTCAGGAGCTTAGCAAGTA TGGCCAGATCCAGAGCTTGAATATTTGTGACAATTTGGCTGATCACATGGTTGGTTACTTGGTTTCAATTCTTTTCTTGC CTCTTTCTTTCATTCTTGTAACCCTAATTTTTGTGATGTTTGTTGATTTTTGGTCAGGTTGGCAATGTATATGTTCAGTA TAAAGAGGAAGATCATGCTGCTAATGCTCTGATGAATCTTACTGGAAGATTTTATTCAGGTACTCAATTTCCCCCTTTTC TCAACCAGTTAGGGTTTTCTACATTTTGACCTTTGTGAGCTACTTACTGTTATTTTGTCATTGTGTGAATTGTTACAACT GTAAACTAATTGGTGGGGTGTTTGTGTTTATGATAATAATGATAATAAAGCCATTTTCTTGCTAAGAAAAAGACATTTTT CAATGTGGTTGTGTTTGTATTTTGTAGTTTTCTTTGTGTAAGCAAAGTTGATAATTTAATATTACTGGTTTCAGGTCAAT ATATTGGAGATGCCAAATGGTTTGACATTGAGTCATTTTTGTTTACCTTACTGTGGCTGTTAGTAGTATTGGTTTGTTAG TTAGTTTGGTACATCGGTGGTTAGGTCGTTGTGTGAGTTGGTTACTACTTACTAGTTCGTTTGGTTCTTGATATCCGCTT TTTGATTAATAGTGCTCACACTGGGAAATCTCATTAGATTTTCAATTCATTCAATGGTATCTCTCTGGTTTTTCAATTCT TGCTCTCTCCCTTGGCCAGCTCCATCTCAATTTACTGAGATTTACTGGCTCTTATTTAACTCATTTTGGTCTCTGAACTT TATCTGAAGAAATGCGTTGTGACCAGATATCATGTGCTCTGTCACGTGGATGCTCTTATTTTCTCCCAAAGTATCTTTCC AAATGTCTAATCTTGTTACTGATTTCACGTCTGGTTTTATATTAAGTTAGGATAGAAATTGGGATCTTATTATCCTTGAT ATTTAGTTGCCCTTGGTAATGATTTTTTTTTCTGAAAATTTGAATTGGGTTTTGTTTGTCATGAAATGAGTCTATTGTAC AATTTATACTTGCAATCACTCAAGGTTGTGATGATTGTTGCAGGAATCATATAAACATATGTTAGAAAATTGATGCTTTA TGTAACACTTTTCTTGTTAAACTCCAAGCACTACGTATCATTGCTTGCTGTTCTCACTCAACCCTCGTCGCTAAACAGTG ACTACTGTTATTGTGATGAGACTTCTAACATAGTAATCCCTCTAGGTCGACCCATCATTGCCGACTTTTCTCCTGTTACG GATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTAAA GAAAATTAGCAGGTTGACTTCTGACTATAGCTGTTGTCGTGCTTTTCCAAGAGTTTTTACTTGCACTTATACTTTGACTG TTCTTACCTTAAACTGTGCTGTTTAACTACAGGGATCTGAGAAGGCGGCTCTTTGGAAGAAATAAGCGGTGGAATGATCG CAGGGGAAGTCGGAGCCGGAGCCGTAGTCGGAGCCCTCCGAGGAATCGGAACTATGAGGAGCGTCCACAGTTTGGTGGTC GTGGTGGTTCTGGTAGAAGAGATTTTGACAGGTCTCATGGCCGCCATGGTAGGAAGCCTAGAAGCCGTAGTCCTCCTCGA TTTAGAGGAAAAAGAAGTAGAAGTCCTGCAGGCAGGGATAGGAGCCCCGTCAGAGAAAGTAGTGCAGAAAGGAGGGCTAA AATTGAGCAATGGAACAGGGAGAAGGAACAAGATGACACTGGTCCTAAGAACAATACTAGCGATGATTATGATGAACTTG CGCAAAATGGTAGTGATTCTGGTAACCATCAGATATAGCAACAGCACTTATTTGGACCAAAATGAGAAGATACCCTGTAA TAAGTGTGGCAAGTGATCTGGTTTGTGTTTTCACCTTTTGAGTTGGTTTTAGTTGTTACTGTTATTCTATTCTGCATTCT ATTTAGTTATAGAACTTTGTAATATTCCATAGCAATGACTTTCAATTTTCTGTGTCAAGTAATATTCATGCAACCTTGTA GGGAGAAAATTTGGAAGTGGTGAGATTTAACTTTTTGCGGGTGATGAAGTATTACATGTTATGCATGTATTATTTACCAT AAATCCATAAGGCACCAGTTCAATGAACTATGGTCTATGATTTTCGTATGGAAAAAGCAAGTTACCAATGGAGGGAGTGT CAAGTGTGCATTGTATGGTTTTGCTAGGATGGAAAACTATGGTGAAAAACAAGAGGAAAACATGCTTATATGTCTGGATG GCATAGGAAAAAGAAAATGTTAGGATATCTGCACATGAAGTGTCAAGTGTCAGTTTTCTTGCCAAGGTTGCCGTGAAAAT GAGATTAGAGTGTGAAATCCTTTGAGAAGTCCATCATTGCTCAACTTTTTCTTTCTATCTCTATTTTTTTCTCTTTACAT TCCTTCCTCTTGTATTCTTTCCTCTTGCTTTCACTTCTACGTCCAAGCAAAGCATTAGAGTCAAAGTGGTAGCTAAGCTA GTTCATCTGGGATGCCTTGTCCTTCATATACGCTGTACATAATCCTACACGTTCTATAATTGATGCAGCCCCACTGAGTT TGTTTGGTTGGAAGTTAGTTTAGTGTGATTTATGTTGATTATTTTTAACTCAAGTGACTTTTGACAAATAAATATTTTTT TTTGGTGCCTCGGAAAACATGACAAATAAATATTGATGATATTAGTTAAAACCACTTAAATGTATACAATTACTGAAAAT GTGCATGTGTTTTACAATGGAATAACATTGCTTGTTAGTATTTCACTAGGTTGGAAAGTAGGTAATACGTATTTTGATAT CCCGAA
CDS sequence (LotjaGi1g1v0680100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGCACTTGGCATCGATCTTCGGAACAGAGAAAGACAGAGTGAACTGCCCATTCTACTTCAAGATCGGAGCCTG CAGACACGGCGACCGTTGTTCTCGCCTTCACACCAAGCCTACCATCTCCCCCACCCTCGTCCTCTCCAACATGTACCAGA GGCCTGACATGAATCTCAACATCATCACGCAGCCGAATCAGCCGCAGCATCAGCCTCAGCCTCTTGACCCTGACAAGCTT CAGGATCATTTTGATGATTTCTATGAAGATCTGTTTCAGGAGCTTAGCAAGTATGGCCAGATCCAGAGCTTGAATATTTG TGACAATTTGGCTGATCACATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGATCATGCTGCTAATGCTCTGATGA ATCTTACTGGAAGATTTTATTCAGGTCGACCCATCATTGCCGACTTTTCTCCTGTTACGGATTTTCGAGAAGCTACTTGT AGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTAAAGAAAATTAGCAGGGATCTGAG AAGGCGGCTCTTTGGAAGAAATAAGCGGTGGAATGATCGCAGGGGAAGTCGGAGCCGGAGCCGTAGTCGGAGCCCTCCGA GGAATCGGAACTATGAGGAGCGTCCACAGTTTGGTGGTCGTGGTGGTTCTGGTAGAAGAGATTTTGACAGGTCTCATGGC CGCCATGGTAGGAAGCCTAGAAGCCGTAGTCCTCCTCGATTTAGAGGAAAAAGAAGTAGAAGTCCTGCAGGCAGGGATAG GAGCCCCGTCAGAGAAAGTAGTGCAGAAAGGAGGGCTAAAATTGAGCAATGGAACAGGGAGAAGGAACAAGATGACACTG GTCCTAAGAACAATACTAGCGATGATTATGATGAACTTGCGCAAAATGGTAGTGATTCTGGTAACCATCAGATATAG
Protein sequence (LotjaGi1g1v0680100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITQPNQPQHQPQPLDPDKL QDHFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATC RQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQFGGRGGSGRRDFDRSHG RHGRKPRSRSPPRFRGKRSRSPAGRDRSPVRESSAERRAKIEQWNREKEQDDTGPKNNTSDDYDELAQNGSDSGNHQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 313 | 313 | 6.4E-153 | – | |
| PANTHER | 1 | 313 | 313 | 6.4E-153 | ||
| ProSiteProfiles | 12 | 40 | 29 | 13.112 | ||
| SMART | 13 | 39 | 27 | 0.0065 | ||
| Pfam | 14 | 37 | 24 | 5.1E-7 | ||
| PRINTS | 18 | 37 | 20 | 8.6E-63 | ||
| PRINTS | 37 | 57 | 21 | 8.6E-63 | ||
| Gene3D | 43 | 151 | 109 | 4.9E-29 | ||
| ProSiteProfiles | 60 | 152 | 93 | 10.241 | ||
| SMART | 73 | 148 | 76 | 1.3E-6 | ||
| PRINTS | 81 | 96 | 16 | 8.6E-63 | ||
| SUPERFAMILY | 83 | 155 | 73 | 1.9E-16 | ||
| Pfam | 89 | 145 | 57 | 6.4E-6 | ||
| PRINTS | 109 | 131 | 23 | 8.6E-63 | ||
| PRINTS | 136 | 160 | 25 | 8.6E-63 | ||
| ProSiteProfiles | 154 | 181 | 28 | 10.465 | ||
| SMART | 154 | 180 | 27 | 0.41 | ||
| Pfam | 156 | 179 | 24 | 3.1E-4 | ||
| PRINTS | 171 | 183 | 13 | 8.6E-63 | ||
| MobiDBLite | 197 | 211 | 15 | - | – | |
| MobiDBLite | 197 | 318 | 122 | - | – | |
| MobiDBLite | 212 | 237 | 26 | - | – | |
| MobiDBLite | 238 | 258 | 21 | - | – | |
| MobiDBLite | 259 | 299 | 41 | - | – | |
| MobiDBLite | 300 | 318 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Cellular component | U2AF | A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point. |
Expression pattern of LotjaGi1g1v0680100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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