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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0752600 |
| Transcript ID | LotjaGi1g1v0752600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp|B8EIA7|IF2_METSB Translation initiation factor IF-2; TrEMBL-Plants: tr|V7D180|V7D180_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132502655..132508731) extracted from Lotus japonicus Gifu genome v1.2.
AACCAATCCAATTGAGATCGGATTGGTTTGGTTTGGGTTTAGAAGTAAAAATCATGAAATCTGTCTAGATCTAAACCGAA TATACTTAATTGGTTCGAACATTTAAACACCATAAATCCGAACCAATCTAATCTAGTCGGATTCCACCCCAATCCTATAT TATTTAACCAAACCCAAATCTCGCTTCTGTTTTTTACCAATAAAAAATGGTCTATTGCCGTTAAAATCTTGATTCATCAT CAGACAGACAATTCAGAAGTTGCAGCGAGCGCTCCTTAAACGAGCCGAGCCATGATGTCGGTCTGCTAAGGCCAACTGAG AGTCGCATCGCATCTTCACCGCCGCATCAGCCATTATCTGTCTCAGCTCCTGTCTCCGCCACCATATCAGTTCCACGCAC AACAAGCCAGTAGTAGGTGGGTGGGTCTTGCCTCAAGAATTTCGAGAAACTCCACTTTAAAACGATTTTTGTTTTGCACT GTTCGTGGTTGAAGGCTCTAATCTAATGCCATGTTCGTTCGTGCTTGATAACCATCATTTGTGTTGTGTAAATGTGTGTT TTGTAAATTGAACATAAGGTGTTTGTTCATTTGTCTTACCCAAAACTTCACAACTGATTCTTCTTTCAAATCACAATTTT ACATATGGCATTAGCGAAGTTTCTATTCTGTGTTCTTCAAGTTATTGTATTGTAATTTTTTTGATTTGATTCCGTTGCCC ATGCTTTCAAATTAGATAGCTGCTGAATGCTCACATGTAGTTTTTAGTCATATTTCTATTTCTGTTCTTCCCTTGGTTTA CTTGGTTTAGAGGACTTATGTGTGTGCTCTTATCTCTTCCACAATGGGGTACGTCCTAGGTGAAATCAGAGGGAAGAAGA AGGAGATGGCTTTGTTTGTTATTGTTGATATCTAGAGCTATAATGTTCATAGCGTGGTGGCTGAAAGTTGTTTCATTTCT TATTACTAATTCATAGGTCGCTACCACATAATGAAGTCTTTTATTCTGGGGTGCTTCGGCTTAAAATTGCATTTCTTATT TTGCTTTCATTGAAAATGATTGTCTAGCTGTTGATTTTCTTAATTACAATGGGGTTTTGCCACCCAGGAGGTCTGACTCT TATCTGAAACGATTACTTGTAATTGATGATTTGGCTATTGCCTTGGCTAAATTTGCTCGTTCTTTTCTGGTTGTCATCGA GATTAAGTAGACCCCTTGTATCTATTCTCTTATAGTCTTGGATGTTTTTAGGGTCTCATCTTAATAAATTGTATTTCCAT TATAAAAAGAAAGAATAAAAAAACACATATTGTCTCCTCTTGTGTACCTCCACCACTCAGGTCACATTGTCTGATGACTG AGGTTTCATTTTAAAGTGTAGCACTGATCTCGATTTCCATGGATGCTCTAATTAAATTCTACATTCCCTAAGTCATGTGT TGAAACTTGAAACAATGACAATTTCAGTTACATGAAAAATCTATCCTAAGTGGTGACTTTTAACCATCTATTATATTTAT TTTATTACAATTGGGTCTTCTCTTGCCAGAAATCATCATTGCAACTCATTTATAAGCTCAAACTTGAGAGGCCAAGAGAC AATTTTAACTCATACAATCTGAAATATTGGAGCCAAATTTGTGGTCATCGTTTACTCGTGATTAGATCCACGATTAATGA GGTGCTGATTTATATCACTTATTATCATTTGGTAATGCTTTTGGCCTGATTTTGCAGAGTTATATGCTTATGAATGGCGT GGTGGGAGCTTGGAAAGAAGGTGACTTGACTCATATGTTCCTTTCATTAAAATTGTGTCAAATATGATTGTTGTCCAGCT TGTAGGCGATTGGACTTTTCCTTTAAAATTATTATTTCTTATAGCTTTTTAAGTTACTGATAGAGCCCTTTTGTTGCCTG AATGCAGAGAATGTACATGAATTTTACTAGAGCGTTGACTAAAACGCCATTTAGGCATTTAGCAGGGTCAAGTCATGCAT CTACCTTTGCTGCAAATTCTGTTTATGCATCAGCAAGATTTGTGCCAGGTATTTGACATGTATATGCTTTTTATGTTATA TTCTGGTTCACTTGTATGTCATATACTCACAAATGTTTTGAACTACAAATGGTGCAGATTTCATCAACCACTCATCCATG GGAGTGACTGGTTTTTCTAGTGGCACTGAAGATTGTGGAATACGGTAAAATAGTATTCAAATTTCAAGTTTAAAATGAAC CGTTGATAATTATACAGTTTAGGTAGTATATAAGGATGATAGCATCATTGAGACTATGTGTGGTGAATAAAACCCGGTCT GAGTTCAACTTCCAATATGTATGCATACTGGTAGCTAGTAGGGAAAAGTCCAACATAAACCTTTGAACCTAGTGTCCTAT ACACTTTTGTCCTCAAAACTTTAAAAAGGACAGGGTGCTAGAAATTATAACAAAACGATTTACAGTTAAGGAGGCTTAAA GATCAAGTTGCACTTCATAAATTTTTAAGGACCTAAACGCACATAACCTTTTCCACTTCCTCACTGCGTGGTGAGTATGC GTGCATATAAATAAGTGATGTTTACCATGTTTGTATGATCTAACCTAAAACATCTTTCAGCTATTGGTGAAAATGGCAAA GCTAAAGTTTATTTGGTTGTTGTTGAAACAAATAAGTGGCATTAGTTGAAATTTTGTACTATATGAATATTTAAAACTTA TATTTAAGTAGTTGCTTGATGGAAAAAGAAAAGATATAGAGGTAATTAGTTTACTATATGATAGGTGCTTCCATACTAGC TCACAAGTTTGGGCAAGAAGTGGTGAGACATTTGGTTTGAAGACCCCAAAAAAGGAGAAGTATGTTAGAAAAGAGAGTAG AAACCAGCCTCCTGTTGAAGCTCCATATGTCCCTCGTAACGTCACAGCTACCAAGTCTAATCCTGTTAAAACAGTAGAAA TATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCATTGCAGGATATCCTCACAAAT GTCGGTGAAAAGGTTGGATCAGAGTTTGAGCCTCTCAGCATGGATATTTCAGAGCTTGTTGCACTGGTATTTCCTCCTTT TAAACCTGTGAATATAGGAAACTGGTACCTTCTTTTAATCCCATTTCTTGTTCGTTGGTCCTTCCCATTTGTAAAAATGG CTACTTCTTACGAAAATATCATATACCCCATTTTACTCATTCTTCTCTTTCAGTATATATATGAAGTTAGCTTTATTTTT TTAAATAGTGGTTTGGGATTAAGTCTTCAAACTCTTCTTATTTCTTTGTTTTGATGTGATATGGTGCAGATCAATGTATC TTGATGAAGTATCTCACTTGAAATTAGTTGGCATTAGGTATTCATTATTGTGCATACCCATATCTGTTGATACGATGTGC ATAGAAAAATAAATGAGAAAGTCAAAACAGATAAGACTAGGCTGAAATATTGGTTGCTAGATTTGGATAAATATTTATTT TATTTCCGAAAAATCATTGAAGAGGATATTCTTGCAAAAAAATTATTTGTTTTCCTGCATTAAGGATCATTGTCTCAAAA GCTTCTTTCCCACCCTCCACCCCTTTCTTTTCTCTAATTTGCTACATGATGCATTTTTAGTTTCTGTTTATTGATTCGTT TATCAGTCTGGCATGGATGTTTTTATTTGGCCATCTTGTTTGGGCTACTGGTTTTATGTTTTTTCACTGAATTAGCTCAT CGCTGCTGCAGGAGGTTGGTGTCAATGTTAAGAGGCTACATTCAACTGAAGGTAATGAGGTTTTACCACGGCCTGCAGTT GTGACAGTTATGGGTCATGTAGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTTGCAGCCAAGGA GGCCGGTGGCATAACTCAGCATATAGGTGCCTTTGTGGTGGTCATGCCTTCAGGAGCATCAATCACATTTCTCGACACTC CTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCGGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGAT GACGGTGTGATGCCTCAGACTCTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAA ATGTGATAAACCGGGTGCAAATCCTGAAAGAGTAAAATTGCAGATGGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTG GTGATATTCAGGTTGTTGAAGTTTCAGCAACTGCAAAAACTGGACTGGATAACCTAGAGGAAGCTTTAGTCCTTCAGGCT GATATGATGGAGCTTAAAGCACGGGTTGACGGGCCTGCTCAAGCGTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGG TCCATTGGTAACTACTATAGTGAAGGCAGGAACTCTAGTTTGTGGCCAGTATGTGGTTGTAGGCTCACAATGGGGAAGAA TAAAGGCTATCAAAGACATGGTAGGGAGGTTAACTCAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGA GGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTCGAATGCTTAGTTCCGGTAGGAAAAA GAAAGCTGAGGAGGATAGGCTTAGAAACAAGATGATACCGGACAATCCAACTACTTCAGATGATTCTGTGGAGGTTCCAC TGACGGTTGAATTGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATTCATTGAAAACTTTA AATAGTCCTCAGGTATGTAAAGATTATAGAAACATGGTAAACTTTTCTTTTTGCATACACATATGCATGCTCAATACTTA GTTATCATGAACTTTTAAGTTTGTTGTGTTGCTTTTATTTGTTTTTTTTTTTTGACAGAAGCTTTTATTTGTTGCTATAA ACATTGTGTAATTTTATTGGCAGGTGTTTGTGAATATTGTCCATGTTGGTGTTGGGCCGATTTCTCAATCTGATGTGGAC TTAGCAAAGGCTTGTGGTGCGTGCATAGTTGGATTCAATATCAAGAGTCCGCCTACTTCTATTACCCAAGCAGCAACTCG TTCTAACATCAAGGTATTAACTTAGCTTATGCTCACATGTGATTGTGGTAAGATCCTATGACAAGAAAATTTTGATAATT GTGCAAGATATATCTGTTTGGTTTTGTTGTAGGTAATTCTGCACCGCGTGATTTATCATCTGTTGGAGGACATAGGCGAT GTGATAATAGAGAAGGCTCCTGGGACTTCTGAGACCCATGTATCTGGGCAAGCAGAAGTGTTGAATATCTTTGAGGTCAA AGGGAGCAAGACCAAGGGACCTGATGTGAAGATAGCGGGTTGTCGGGTTGTTGATGGTTTTGTAGCCAGGTCAGGAACCA TAAGGCTCCTGAGGAGTGGGGAAGTTATGTTTGAAGGACCGTGTGCATCTCTTAAGCGTGAGAAGCAGGATGTGGATACT GTGAAAAAGGGTAATGAGTGTGGGCTAGTCATCAGTGACTGGCATGATTTCCAGATTGGAGATGTCATCCAGTGCTTGGA ACAAGTCATAAGGAAACCCAAGTTCATCAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGATACCATTACAACAACA ACAGCCAAGCCTGTTCAAATTGAGTACTGAAGTTGATAATTCTTTCAGATAACATTTTTTTGATAAAATATCCAGCAAGC AGAAAAACTTAGTATGGATAGATTGTTATAGTAGTGAAGTTTTGAAGCATAGTATACTAGTTTTTATTTTATTTTTTGAT GTGCATTGCACGTGTACTAAGTTGTTTTTAACTGTATCAAATTATGTTAGATCCACAGCTCTATATTCCTCAAGAGAGTA GAAAATGTTTAACTTGTTGTATCAAGTGCAAGAAGATACCTTCTTCACGCATTATGAATATATTCAAATAAAAGAAAAAT GAGTGACTTTAGTTGACACCAATGCTGTACAAAATTGTCGACTGAAATTTTGATGCTATTTTTGCTTAACTTTCCGA
CDS sequence (LotjaGi1g1v0752600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGGTGGGAGCTTGGAAAGAAGAGAATGTACATGAATTTTACTAGAGCGTTGACTAAAACGCCATTTAGGCATTT AGCAGGGTCAAGTCATGCATCTACCTTTGCTGCAAATTCTGTTTATGCATCAGCAAGATTTGTGCCAGATTTCATCAACC ACTCATCCATGGGAGTGACTGGTTTTTCTAGTGGCACTGAAGATTGTGGAATACGGTGCTTCCATACTAGCTCACAAGTT TGGGCAAGAAGTGGTGAGACATTTGGTTTGAAGACCCCAAAAAAGGAGAAGTATGTTAGAAAAGAGAGTAGAAACCAGCC TCCTGTTGAAGCTCCATATGTCCCTCGTAACGTCACAGCTACCAAGTCTAATCCTGTTAAAACAGTAGAAATATTTGAAG GCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCATTGCAGGATATCCTCACAAATGTCGGTGAA AAGGTTGGATCAGAGTTTGAGCCTCTCAGCATGGATATTTCAGAGCTTGTTGCACTGGAGGTTGGTGTCAATGTTAAGAG GCTACATTCAACTGAAGGTAATGAGGTTTTACCACGGCCTGCAGTTGTGACAGTTATGGGTCATGTAGATCATGGTAAAA CTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTTGCAGCCAAGGAGGCCGGTGGCATAACTCAGCATATAGGTGCCTTT GTGGTGGTCATGCCTTCAGGAGCATCAATCACATTTCTCGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAG AGGTGCGGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGTGTGATGCCTCAGACTCTTGAAGCCATGT CCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAAATGTGATAAACCGGGTGCAAATCCTGAAAGAGTA AAATTGCAGATGGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGTGATATTCAGGTTGTTGAAGTTTCAGCAACTGC AAAAACTGGACTGGATAACCTAGAGGAAGCTTTAGTCCTTCAGGCTGATATGATGGAGCTTAAAGCACGGGTTGACGGGC CTGCTCAAGCGTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGAACT CTAGTTTGTGGCCAGTATGTGGTTGTAGGCTCACAATGGGGAAGAATAAAGGCTATCAAAGACATGGTAGGGAGGTTAAC TCAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTG TTCATTCTGAGGAGCGAGCTCGAATGCTTAGTTCCGGTAGGAAAAAGAAAGCTGAGGAGGATAGGCTTAGAAACAAGATG ATACCGGACAATCCAACTACTTCAGATGATTCTGTGGAGGTTCCACTGACGGTTGAATTGCCAGTAATTGTAAAAGCAGA TGTTCAGGGAACTGTTCAAGCTGTCACAGATTCATTGAAAACTTTAAATAGTCCTCAGGTGTTTGTGAATATTGTCCATG TTGGTGTTGGGCCGATTTCTCAATCTGATGTGGACTTAGCAAAGGCTTGTGGTGCGTGCATAGTTGGATTCAATATCAAG AGTCCGCCTACTTCTATTACCCAAGCAGCAACTCGTTCTAACATCAAGGTAATTCTGCACCGCGTGATTTATCATCTGTT GGAGGACATAGGCGATGTGATAATAGAGAAGGCTCCTGGGACTTCTGAGACCCATGTATCTGGGCAAGCAGAAGTGTTGA ATATCTTTGAGGTCAAAGGGAGCAAGACCAAGGGACCTGATGTGAAGATAGCGGGTTGTCGGGTTGTTGATGGTTTTGTA GCCAGGTCAGGAACCATAAGGCTCCTGAGGAGTGGGGAAGTTATGTTTGAAGGACCGTGTGCATCTCTTAAGCGTGAGAA GCAGGATGTGGATACTGTGAAAAAGGGTAATGAGTGTGGGCTAGTCATCAGTGACTGGCATGATTTCCAGATTGGAGATG TCATCCAGTGCTTGGAACAAGTCATAAGGAAACCCAAGTTCATCAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA
Protein sequence (LotjaGi1g1v0752600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWWELGKKRMYMNFTRALTKTPFRHLAGSSHASTFAANSVYASARFVPDFINHSSMGVTGFSSGTEDCGIRCFHTSSQV WARSGETFGLKTPKKEKYVRKESRNQPPVEAPYVPRNVTATKSNPVKTVEIFEGMTLVELAKRTGKSVSSLQDILTNVGE KVGSEFEPLSMDISELVALEVGVNVKRLHSTEGNEVLPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAF VVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERV KLQMASEGLLLEEMGGDIQVVEVSATAKTGLDNLEEALVLQADMMELKARVDGPAQAYVVEARLDKGRGPLVTTIVKAGT LVCGQYVVVGSQWGRIKAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKAEEDRLRNKM IPDNPTTSDDSVEVPLTVELPVIVKADVQGTVQAVTDSLKTLNSPQVFVNIVHVGVGPISQSDVDLAKACGACIVGFNIK SPPTSITQAATRSNIKVILHRVIYHLLEDIGDVIIEKAPGTSETHVSGQAEVLNIFEVKGSKTKGPDVKIAGCRVVDGFV ARSGTIRLLRSGEVMFEGPCASLKREKQDVDTVKKGNECGLVISDWHDFQIGDVIQCLEQVIRKPKFIKSESGAVRIEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 2 | 714 | 713 | 0.0 | ||
| PANTHER | 2 | 714 | 713 | 0.0 | – | |
| Hamap | 8 | 705 | 698 | 13.67 | ||
| Phobius | 27 | 38 | 12 | - | – | |
| Phobius | 39 | 43 | 5 | - | – | |
| Phobius | 44 | 719 | 676 | - | – | |
| TIGRFAM | 128 | 704 | 577 | 1.5E-175 | ||
| Gene3D | 196 | 370 | 175 | 5.7E-67 | – | |
| ProSiteProfiles | 198 | 368 | 171 | 48.23 | ||
| SUPERFAMILY | 199 | 389 | 191 | 1.1E-46 | ||
| TIGRFAM | 201 | 354 | 154 | 8.7E-29 | ||
| CDD | 202 | 365 | 164 | 3.93859E-97 | – | |
| Pfam | 203 | 360 | 158 | 1.2E-31 | ||
| Gene3D | 371 | 484 | 114 | 1.5E-31 | – | |
| SUPERFAMILY | 372 | 454 | 83 | 1.08E-17 | ||
| CDD | 374 | 469 | 96 | 1.52629E-35 | – | |
| Gene3D | 497 | 600 | 104 | 3.4E-29 | ||
| Pfam | 498 | 590 | 93 | 3.2E-29 | ||
| SUPERFAMILY | 499 | 607 | 109 | 7.98E-26 | ||
| Gene3D | 602 | 704 | 103 | 2.6E-29 | – | |
| SUPERFAMILY | 603 | 704 | 102 | 1.26E-22 | ||
| CDD | 608 | 697 | 90 | 9.97156E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0752600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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