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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0753100 |
| Transcript ID | LotjaGi1g1v0753100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q4R5M2|CATB_MACFA Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132587786..132591689) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATAAAAATATCTCCCCTATCCATTGGAATCTGGATCACGAAAGTTGGGTTGGGTGTGCTGTTTGTGTCGTGTTGT GAATTTTCTGTTATTTTCTTTGAAACTTGCGCGGCACTGTTGAAACTTTCCCTTTTTCTCACCCAATCCAATCCAATCCC ATCTCATGTCATGTTAGAGTTTTCATCCCCACGCAACACTCAAATTGTCACCCTCTGCAACTCATGTAGTAACTTGTAAC AAATAAACTAGTAGTAGTATTTATTATATTATATTATACACGCCAAATACCCCACCTCAACTTGCCAATCATACCAACAT TCATCTATCTATAAAATACAAAATTCAGCTCCCACTTTTTCATTCCATCACCAACAAGGAAAATGGCCTCAACTCTTCTT CCCCTCCTCGCTACCTTGTTTCTGGCTTTCTCCGTCTACTATCTCCAGGTTATTTCTTTTCTTCAACATCCATTTTCCCC CTTTTTCTGCTTCTTCCTAGGGTTTGATCATGTCTATTTATGCTTCCTTTCTTTAATCACTACCTCCTTGTTCACAGATC GCTGAAGCAGAACCACAACAGCTTTCTACTCTCAAGCTTAACTCTCGTATTCTTCAGGTAATTAATTCATTTCACTTGTT TCAACCTTAATTGCGGATGCTTAGTTTTTTTTTTGAATATTTGAAGTTTGAATTTACTGTTCATGCCATGTGATTTGATG AATGGTTTTTGTTAGAAATATAATCATTCATTAATGTATCTTTTACGTAACAACTTAAGCTTTTCGGATAATTAATTGGT TATTTGACAGTTTTAACGTTATGATCATGATGCAGGAGTCAATTGCGAAAGAGATTAACGAAAACCCCGGGGCAGGATGG GAGGCTGCTATCAGTCCTCGTTTCTCCAACTACACAGTTAGTCTTCAACTTTACCTGCATAATATAATACCCTCGGGTTT GGATCCTCTCCATCCATGTTTCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTAGAT CAATTTAAGAAGAGAGAGAAAAAATGAATTGTATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAA TCCTCACCTTTAAAATTTAAAATCGATGGCTCAGATTTTGGATGGAGAGGAGATGGAGAGGATCCAAATCCAATACCCTC TTGATGATTGTTATTTACTCTTTAAATTGGAATTTTCTCATTTTCACTTGAACATGCTTTAGTCACATGATAATATGTTT TTGACTTTGGAAGGCATGTATTTTGTTTGATGCACTGCACAGGTTGCACAATTTAAGCGCCTTCTTGGAGTGAAACCATC GCCTAAGAAGGAGCTCAGAAGTACACCCGTTGTATCTCATCCGAGATCATTGAAGTTGCCGAAGAGTTTCGATGCAAGGA CGGCTTGGTCGCAGTGTAGCACTATTGGAAGAATCCTAGGTCAGTTACTAGTTCCTTCTCATTACTTTTTTTTAATAATT AATTAGTGTGATTGGAAGGAAGTGCTGACCCTTTTATTTTTCTTTGTTATTGACAATAACTTGGATTTCTGAATCACTTT TCAAATTAAAGATCAGGTAATTGTCTTGTTTTTCTCATATTGGCTACTTTTCAAACACTTCCATTGTGGTTCTTTGAGCA AAAAGTAATCATCTGATCCTTGTGTTGATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTGGAATCGTT ATCAGATCGCTTTTGTATTCATCTTGATGTGGTCAGTAGTACTTCTAATAAAGCAATATTGAACTTTTTCTTAATTAGTG CATCACAGTGAATCTTCACACACTGGAGGGGCTTTACCATTTGAAAAAGGAATTTACATCCTATCTGTTTAATTGCAGAA TGTATCTCTTTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTCTGTGGGTCTGGCTGTGATGGGGGATATCCTCTAT ACGCATGGCGATACTTAGCTCACCACGGTGTTGTCACTGAAGAGGTAGCAAATTTTTTCATTTGCCTTTATTACTTAGGG ACTAAAATCTAGGCAGTTAGAATCTGTATTCATTCAGATGTTCCCTTCAATTGATGCTAATAAGACTTGTATTCCCCAGT TGATCACTATGTCTCTGTTTTTTCTGGCTTTCTTATAAACAGCATTTTATTTTTTACATGACAGTGTGACCCATACTTTG ATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGTGTGTTAGGAAGTGTGTAAAAGGGAAC CAGATTTGGAAGAAGTCAAAGCACTTTAGTGTTAATGCATATTCGGTAAAGTCTGATCCCTATGATATCATGGCAGAAGT TTATAAGAATGGGCCTGTTGAAGTCGCATTCACTGTTTATGAGGTAAAAGAAAACTCTTGCCCTTGCTTCTGCAATTAAA TTTTGTGCAACTTCAGTGGTCTAAAATTGGAAACTCAAAATAATCCTATTTGAACTTATTAATATATAATCTTATTTTGG AGACAATGATAGTGAATGATTGTGATTTGATGTCATGTGATCTGAACTGCTAAACATATCATAAAATATGAACTTATGGA TACGAATTGAGAGGAATGAGAAATCTCTTCCAGTTTAGCAACTTAGTAGGGAAATTGAAAATAATCTCACTTGTTGGAGG CTCAGATGAACAAGACTTTTCATTCTGATCAACTATACACCTATTAAGGATAAAGATATATGTTTGATTCTTTTGGCAAA TCATATTGGATTCGAAAACCTAATTATGGATTTACCTTATGTTGGAACACTGACGATGAGTTTAAGTATTTCGTGATTTT TCATGAAGGAGGACTAAAGGTAAAAGTCTATTTTTGAACTTAATACATGACAGGACATTATGGCACCGTGTCTTCCATAT GGTTGTTATTGTTGGTCTCTTGTGTGTGCTGTAAAAGGATGATGGGTGCAACTGCAACTCTCTAGAACCATTTTCATGTA TTTTTGCAAACCTCTCACTAATTTTCACCTCTTCACAGGATTTTGCCCACTACAAATCGGGAGTTTACAAGCACATCACA GGTTCTCAATTAGGTGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAACTGACGAGGGGGAGGACTATTGGGTATGTTG ATATGTTTCTGAGTATTGACACTTTCGTTTTCGTCCCCTAGACAATGCTGCTTTATGAAATTCAGAATGTATACTGATTG AAAATTTTCTGTTTCAGCTTATCGCAAATCAATGGAACAGAAGCTGGGGAGATGTATGTAAACTGAACTATTTTTCAGCT TAAATATCTGTTAATAAAGGTGTGCCTTAGCTAATGATCTAATTTAATCTATATCGCAGGATGGTTACTTCATGATCAGA AGAGGAACAAATGAATGTGGGATTGAAGAGGATGTTACTGCAGGTTTGCCTTCCACCAAAAATATGGGAAGATGGGTGAT GGACATGGATGCTGACGCTGATGTTTCATTCTGAATATAAATATAGATTATCTTACCAATTAGATTCTGTATGGTGTGTA TTGAAAAAATCTGCACCAATTACTGTCTGTACTCCAAACTATCCAAATTGTGATTATGATGTTGAAAGAAGGTAAGCTTT TGAGGTTTATTGGCTTTAGAGAGAAACTGCCATAATTACTCATGAGCACTTGGAATAATTCATGTCCTCCATTCAGCTTT GATGATGATGATCCTTAAATGATGATACTTGATTTTTCTTTTCGTGTGGTTGAATTGATTTTACGATTCTTTTGTATGAA AACATGAAGCATCAGACTAATAATATGAAAAGAAAAGAAGAAAAAGGTGTTATCAATCCAAAAA
CDS sequence (LotjaGi1g1v0753100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCAACTCTTCTTCCCCTCCTCGCTACCTTGTTTCTGGCTTTCTCCGTCTACTATCTCCAGATCGCTGAAGCAGA ACCACAACAGCTTTCTACTCTCAAGCTTAACTCTCGTATTCTTCAGGAGTCAATTGCGAAAGAGATTAACGAAAACCCCG GGGCAGGATGGGAGGCTGCTATCAGTCCTCGTTTCTCCAACTACACAGTTGCACAATTTAAGCGCCTTCTTGGAGTGAAA CCATCGCCTAAGAAGGAGCTCAGAAGTACACCCGTTGTATCTCATCCGAGATCATTGAAGTTGCCGAAGAGTTTCGATGC AAGGACGGCTTGGTCGCAGTGTAGCACTATTGGAAGAATCCTAGTTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTG CTGTGGAATCGTTATCAGATCGCTTTTGTATTCATCTTGATGTGAATGTATCTCTTTCTGTTAATGACCTTCTTGCATGC TGTGGCTTTCTCTGTGGGTCTGGCTGTGATGGGGGATATCCTCTATACGCATGGCGATACTTAGCTCACCACGGTGTTGT CACTGAAGAGTGTGACCCATACTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGT GTGTTAGGAAGTGTGTAAAAGGGAACCAGATTTGGAAGAAGTCAAAGCACTTTAGTGTTAATGCATATTCGGTAAAGTCT GATCCCTATGATATCATGGCAGAAGTTTATAAGAATGGGCCTGTTGAAGTCGCATTCACTGTTTATGAGGATTTTGCCCA CTACAAATCGGGAGTTTACAAGCACATCACAGGTTCTCAATTAGGTGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAA CTGACGAGGGGGAGGACTATTGGCTTATCGCAAATCAATGGAACAGAAGCTGGGGAGATGATGGTTACTTCATGATCAGA AGAGGAACAAATGAATGTGGGATTGAAGAGGATGTTACTGCAGGTTTGCCTTCCACCAAAAATATGGGAAGATGGGTGAT GGACATGGATGCTGACGCTGATGTTTCATTCTGA
Protein sequence (LotjaGi1g1v0753100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTLLPLLATLFLAFSVYYLQIAEAEPQQLSTLKLNSRILQESIAKEINENPGAGWEAAISPRFSNYTVAQFKRLLGVK PSPKKELRSTPVVSHPRSLKLPKSFDARTAWSQCSTIGRILVQGHCGSCWAFGAVESLSDRFCIHLDVNVSLSVNDLLAC CGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYQTPKCVRKCVKGNQIWKKSKHFSVNAYSVKS DPYDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR RGTNECGIEEDVTAGLPSTKNMGRWVMDMDADADVSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 10 | 340 | 331 | 1.6E-154 | – | |
| PANTHER | 10 | 340 | 331 | 1.6E-154 | – | |
| Phobius | 17 | 26 | 10 | - | – | |
| Phobius | 27 | 357 | 331 | - | – | |
| Gene3D | 33 | 343 | 311 | 3.5E-103 | – | |
| Pfam | 41 | 82 | 42 | 1.4E-9 | ||
| SUPERFAMILY | 44 | 337 | 294 | 1.37E-91 | ||
| SMART | 101 | 336 | 236 | 2.0E-84 | ||
| Pfam | 101 | 334 | 234 | 3.5E-65 | ||
| CDD | 102 | 335 | 234 | 6.55353E-130 | – | |
| ProSitePatterns | 123 | 134 | 12 | - | ||
| PRINTS | 123 | 138 | 16 | 3.3E-8 | ||
| ProSitePatterns | 282 | 292 | 11 | - | ||
| PRINTS | 284 | 294 | 11 | 3.3E-8 | ||
| PRINTS | 300 | 306 | 7 | 3.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cysteine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. | ||
| Biological process | Regulation of catalytic activity | Any process that modulates the activity of an enzyme. |
Expression pattern of LotjaGi1g1v0753100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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