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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0760100 |
| Transcript ID | LotjaGi1g1v0760100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA helicase; TAIR: AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM7; TrEMBL-Plants: tr|I1JQR6|I1JQR6_SOYBN DNA helicase; Found in the gene: LotjaGi1g1v0760100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133331820..133336723) extracted from Lotus japonicus Gifu genome v1.2.
GACCATGGCGATGCCAAATACATGAAGATCCTTGTAAGTCCTATCTCTCAACAGTAAACTCAACTCCAGTTAACCACGCT GCTTAACCCTAATCCCCTTTTTCTCATTTTTCAATTTTCCCCCTTTTCAGCAAGACGTCGCAAATCACAAATTCCGAGCA ATAAACATCGAGCTCGAGGACTTAATTAACGTAAACTTCCTATCTTCCTTTTTGTTCAACATGGGTTTGTAAATTTCTAA TCAAAATAACTGCTTTTGCTTTTTCTGTTTGTTTGTTTTTCATTTGGTTTTGTGTGTGTTTCAGTATAAGGATCTGGATG AAGAGTTTCTGAACCGTGTTATTGAGAATACCAGAAGGTATATTGGGATTTTCGCCGATGCTATCGACGAGCTCATGCCG GCTCCCACTGAGACCTTTACTGATGATGATCATGACATATTGATGACTCAGAGATCTGATGAAGGGACCGAAGGAGCTGA TGGTTCCGACCCGCGTCAGAGGATGCCTCCTGAGATCAGGCGATACTAGTGAGATTTCATTCTTAGCTTTGTGTTCAAAT TTTACACCCATGATTGCTCAGTTTTGTTTCACAAGACCAATTAATTAGGTTTAGCTTGTGATGGAGTTTTCAATGGGCAT GGACGGGTATTATGTGAGGGTTGTTTATGCCTAAGCTTTTATATGACAGCCCTAATATTATTACCTGGTGGTGTATTGCA GTGAAGTTTACATCAGTGCAGCTTCAAAAGGACAGCCATTTACAATTAGGGAGGTGAAGGCTTCCAACATTGGTCAGCTT GTAAGGATATCTGGCATTGTGACTCGTTGCTCAGATGTTAAACCACTGATGCAAGTGGCTGTGTACACGTGTGAGGAATG TGGTTTCGAAATTTACCAGGTAATTCATGAAAGAACTGCTTGAACTTTAGTTTTGATGTCCTCGTGTACTAAAAGGTTTT ATGATGAAGAAGGGAAATGAAAGAACTACAGTAGGAGTTTGGCTTGCCATGACTCACAAAATTCCTTAAAATTTCTTGAT TTTAATCCCCGCCATTATGATTTGGTTGCTAGGATGTTAAGCTTTGATATTTAAAGTACTATTACAATCTATTTAACCTT GTTAGTTTTTTGTCATGGATTTTTTCTTCTTTTGTGGGGTATGCCTAGGTTGTTATGGAATTTATGTGCCAATAGGTCTT TGACTTGGTTGTTTTCTCCCCTTCCTAAACAGGAAGTCACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAGGG CGCTGTAAGACAAATGCAAATAAGGGGAATGTCATCCTTCAACTGAGAGCATCAAAGTTTTTGAGGTTTCAAGAGGTTTG TACTCTGTCTTTTGCAGGACTATATGCCCTGATGCATGCTTAATTACTCTTTGTGCGTTCCTGTTCAATTGCTTATTAAC TCAAGCATGAGAAATTTGCTATATGGTTAAACTGCAGGCAAAAGTTCAAGAGTTAGCTGAACATGTTCCGAAAGGCCATA TTCCAAGAACGATGACTGTTCACTTTAGGGGAGAACTCACAAGAAAGGTTGGCTATTTTTTGCCAATTGCATTGGACTAA TAGTTTCTATATCAAATATTATCAAGTACCTGAAATTGTGTTAAGTACATAGTTGAATTGTCTTTAGTATATTGACTTAT CATTGCAACCATTTTAAGTTATTGGCTTGCTGATAACTAACTGATTTTCTGTTACTGAACTTTAAGTGGCTAATTTTCAG TGACTGTTTATTAACTAAGGCTTGTTATGCATTGTCAGGTAGCTCCAGGTGATGTGGTTGAATTATCTGGGATTTTTCTT CCTATGCCTTACACTGGTTTTAGAGCAATGCGGGCTGGCCTAGTTGCTGACACGTACTTAGAGGCCATGTCTGTAACTCA TTTCAAGAAAAAATATGAAGAGTAAGTTACTTTTCAGATCTTAATTGATAATAGATGGCACCTTTTCTTTTCCATCCCAG TTTCTGTATAGTAGTTTGTCTTGGACTTATTTATGTGCTGCTTGGCTTTGTGTCCACTGTGATATTGACATATTGTTATA ACCCGCTTGCTCATAATAAAATCCATACAGTAGCTACTGGATAATCTTATTTAAAATAATTTGGGATAACATAGAAGGTG CCTAATTGGTTAATTCTGTCATAGATATGAACTTCAAGGAGATGAGGAAAAGCAGATAGCAAGTTTATCAGAAGATGGTG ACATCTACAATAAGTTGGCACGGTCACTAGCCCCTGAAATTTTTGGACATGAAGATATTAAAAAAGCACTGCTTCTTCTT CTTGTTGGTGCTCCCCATCGGAACTTGAAAGATGGGATGAAGGTGATGAATTATGTTTCTATAAATTGGTGGGCTTAAAC TTTTTATTTATAAAATTCAAGTTGGATTAGTAGGGATTCAGACATGAAGTAGTTTATTGAACTTACAATGGCATCAGTGT CTTGTATGGAATTTGTGCTTTCTTCTCTCCTTATTGTGCTACTGGTTATACTTTCTGTTAAGCTTATTTTGCATTGTGTT TGATTTATCATTTTGTATGAAATATCATATACATGATTAAACCACTAAATATCATAGTTTTCATTTAATTGCAGATCAGA GGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACATATAATCAATGTAGCACC CAGGGGTGTGTACACTACTGGCAGAGGAAGTAGTGGGGTTGGTCTGACTGCTGCTGTTCAGAAAGATCCTGTGACAAATG AGTTTGTCTTGGAAGGCGGGGCATTGGTAATGGAAACTTGTTTTTCAAGTCTAGTATTTCTTTCTATCCATATTGTGACT ATGTTATACTTTAGGTTGTAAAAAGTAAAAACTAGAAAAACAAGGTGAGACACTTGAAATGCTGTCAGACAGTACTGGTT GAATGAAGATGGGAAATGAGTCATGTGTGGAACCACTTCTTTAGCTCCTATAGGCTATATCTATACATTCTATGACAGAA TATTCTGATTTCAGGTGCTAGCAGATATGGGCATCTGCGCTATTGATGAATTTGACAAGATGGATGAATCGGATCGTACT GCTATCCATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCGCTGAATGCAAGGACTGC TGTGCTTGCTGCAGCTAATCCAGCATGGTATTATTTTTTCCTTATTTTTTTCATCTTTAAGTGGCAGATAACATTTTATC AAGGTGCATTATGTGCTTCCAAAATCTAATTTTGTTCATATTTTATTGTGAAGGGGAAGATATGATCTAAGACGAACTCC AGCTGAAAATATTAATCTTCCTCCTGCCCTCCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATCGGGCAGATATGG ATACTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCACCAAAATAAAGAGTCTCCCGCTCTGGGATTCACTCCTCTT GAGCCATCTGTTCTCCGGTAAGTACAGAAGACAGACTGCTAATTCTTTTTTAATAAAAGCAAGATTGAGTTTTATTGCAC ATATCTTGCCCATTTGATTTATGGCTCTGAACACTCTTGTTCTTCATGTGTCTGTGTCAATGTTCTTTTTGCTAGAGAGA ATGTTACAAACTAAATTATGTGTTGCTTTTATGTAGTGCATACATATCAGCTGCAAGAAGGTTGTCTCCTAGTGTCCCAA GGGAACTGGAAGAGTATATTGCTAGTGCATATTCAAGCATTCGTCAAGAAGAAGCAAGGTCTAATGCTCCCCACTCTTAT ACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAACTGTAAGTCTTTCTTCGTCTCCTCATTTTTTTACCAGGTG ATACTGTTAGTTTCTTTAGCAGCGCATAAAATTATGTTTAAAAGAGGCAAATGATAGAAGTAATCAGGCATTTAGGGTTA TATTGATTTTTCTCTGATGGTGATGATTTATGTGCATACTTTATCAGCTGAAAATATATCAATAAATCATGAAGAGTGCA GTGTTTAAAATAAAAATTTAATAACCAAATTAACAATTTCTGGCCTTAAGAACTGTACCTAATTAGTCAGATAGAAAGAC ACTGAAAATTACTTATATTTCTGAGCAAAATTATTCCTTTATAATTTCTAAACAGGCACTAGCAAGACTCCGTTTTTCTG ACACTGTTGCTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCAGATGAGCGT CAAAAATCTGGTCTGGATGCCATATCTGATATATATTCCGTACTGCGAGATGAAGCTGCCAGAAGCAAGCAAATGGATAT CAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGTGAGATCCCCACCCAAAGCTGAATTTTATTGTGTTGCAAAAA AAGTACTTTAACCATTGAATTCTATTGGCGAACAAATGAATAACCGAGTTTATGGTCATCATGATATCTTTTAAGGCTGG CTTTTGTTGAATAACTGAGTTTATGGTCGTCATGATATCTTTTATTCCATTATTTGTTGTAAGAATAGGAAAAGTGAGTT AAAATTTACACTATACACTAGAGAGACTAATAGTGTAGTGATACTCATTTTGTTTTGGTCTTGTGAAATAGGGATAGGCC CTTTTGTCAATGAGATACTTGTTTAGTTTCCCCTCCTAGGTAATATCTTTTGACCCCATTTGTTATTTATTTCGAACAGG GATACAGCGAGGCTCAGTTGAAAGAATGTTTGGAAGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTC GACATACGATTTATTGATGCTTGA
CDS sequence (LotjaGi1g1v0760100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATCCTTCAAGACGTCGCAAATCACAAATTCCGAGCAATAAACATCGAGCTCGAGGACTTAATTAACTATAAGGA TCTGGATGAAGAGTTTCTGAACCGTGTTATTGAGAATACCAGAAGGTATATTGGGATTTTCGCCGATGCTATCGACGAGC TCATGCCGGCTCCCACTGAGACCTTTACTGATGATGATCATGACATATTGATGACTCAGAGATCTGATGAAGGGACCGAA GGAGCTGATGGTTCCGACCCGCGTCAGAGGATGCCTCCTGAGATCAGGCGATACTATGAAGTTTACATCAGTGCAGCTTC AAAAGGACAGCCATTTACAATTAGGGAGGTGAAGGCTTCCAACATTGGTCAGCTTGTAAGGATATCTGGCATTGTGACTC GTTGCTCAGATGTTAAACCACTGATGCAAGTGGCTGTGTACACGTGTGAGGAATGTGGTTTCGAAATTTACCAGGAAGTC ACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAGGGCGCTGTAAGACAAATGCAAATAAGGGGAATGTCATCCT TCAACTGAGAGCATCAAAGTTTTTGAGGTTTCAAGAGGCAAAAGTTCAAGAGTTAGCTGAACATGTTCCGAAAGGCCATA TTCCAAGAACGATGACTGTTCACTTTAGGGGAGAACTCACAAGAAAGGTAGCTCCAGGTGATGTGGTTGAATTATCTGGG ATTTTTCTTCCTATGCCTTACACTGGTTTTAGAGCAATGCGGGCTGGCCTAGTTGCTGACACGTACTTAGAGGCCATGTC TGTAACTCATTTCAAGAAAAAATATGAAGAATATGAACTTCAAGGAGATGAGGAAAAGCAGATAGCAAGTTTATCAGAAG ATGGTGACATCTACAATAAGTTGGCACGGTCACTAGCCCCTGAAATTTTTGGACATGAAGATATTAAAAAAGCACTGCTT CTTCTTCTTGTTGGTGCTCCCCATCGGAACTTGAAAGATGGGATGAAGATCAGAGGAGATTTACATATATGTTTGATGGG TGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACATATAATCAATGTAGCACCCAGGGGTGTGTACACTACTGGCAGAG GAAGTAGTGGGGTTGGTCTGACTGCTGCTGTTCAGAAAGATCCTGTGACAAATGAGTTTGTCTTGGAAGGCGGGGCATTG GTGCTAGCAGATATGGGCATCTGCGCTATTGATGAATTTGACAAGATGGATGAATCGGATCGTACTGCTATCCATGAAGT TATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCGCTGAATGCAAGGACTGCTGTGCTTGCTGCAG CTAATCCAGCATGGGGAAGATATGATCTAAGACGAACTCCAGCTGAAAATATTAATCTTCCTCCTGCCCTCCTATCAAGA TTTGATCTGCTGTGGTTAATCCTTGATCGGGCAGATATGGATACTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCA CCAAAATAAAGAGTCTCCCGCTCTGGGATTCACTCCTCTTGAGCCATCTGTTCTCCGTGCATACATATCAGCTGCAAGAA GGTTGTCTCCTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATATTCAAGCATTCGTCAAGAAGAAGCAAGG TCTAATGCTCCCCACTCTTATACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAACTGCACTAGCAAGACTCCG TTTTTCTGACACTGTTGCTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCAG ATGAGCGTCAAAAATCTGGTCTGGATGCCATATCTGATATATATTCCGTACTGCGAGATGAAGCTGCCAGAAGCAAGCAA ATGGATATCAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGGATACAGCGAGGCTCAGTTGAAAGAATGTTTGGA AGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTCGACATACGATTTATTGATGCTTGA
Protein sequence (LotjaGi1g1v0760100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKILQDVANHKFRAINIELEDLINYKDLDEEFLNRVIENTRRYIGIFADAIDELMPAPTETFTDDDHDILMTQRSDEGTE GADGSDPRQRMPPEIRRYYEVYISAASKGQPFTIREVKASNIGQLVRISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEV TARVFMPLFECPSGRCKTNANKGNVILQLRASKFLRFQEAKVQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSG IFLPMPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELQGDEEKQIASLSEDGDIYNKLARSLAPEIFGHEDIKKALL LLLVGAPHRNLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGAL VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSR FDLLWLILDRADMDTDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYIASAYSSIRQEEAR SNAPHSYTTVRTLLSILRISTALARLRFSDTVAQSDVDEALRLMQMSKFSLYSDERQKSGLDAISDIYSVLRDEAARSKQ MDISYARALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 103 | 103 | 3.2E-9 | ||
| SUPERFAMILY | 2 | 265 | 264 | 2.57E-57 | ||
| PANTHER | 10 | 674 | 665 | 7.0E-264 | ||
| PANTHER | 10 | 674 | 665 | 7.0E-264 | ||
| PRINTS | 91 | 103 | 13 | 5.6E-21 | ||
| SMART | 110 | 609 | 500 | 2.2E-302 | ||
| Pfam | 114 | 244 | 131 | 1.8E-32 | ||
| Gene3D | 114 | 243 | 130 | 1.9E-32 | – | |
| PRINTS | 129 | 140 | 12 | 5.6E-21 | ||
| Gene3D | 144 | 191 | 48 | 1.9E-32 | – | |
| PRINTS | 147 | 158 | 12 | 5.6E-21 | ||
| PRINTS | 164 | 176 | 13 | 5.6E-21 | ||
| PRINTS | 256 | 266 | 11 | 5.6E-21 | ||
| Gene3D | 282 | 614 | 333 | 2.3E-131 | – | |
| Pfam | 285 | 507 | 223 | 6.6E-101 | ||
| ProSiteProfiles | 297 | 503 | 207 | 95.497 | ||
| CDD | 300 | 607 | 308 | 0.0 | – | |
| SUPERFAMILY | 307 | 619 | 313 | 2.55E-42 | ||
| PRINTS | 338 | 353 | 16 | 8.7E-33 | ||
| PRINTS | 398 | 412 | 15 | 8.7E-33 | ||
| ProSitePatterns | 406 | 414 | 9 | - | ||
| PRINTS | 426 | 439 | 14 | 8.7E-33 | ||
| PRINTS | 450 | 462 | 13 | 8.7E-33 | ||
| PRINTS | 477 | 485 | 9 | 8.7E-33 | ||
| Pfam | 524 | 607 | 84 | 8.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. |
Expression pattern of LotjaGi1g1v0760100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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