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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0767400 |
| Transcript ID | LotjaGi1g1v0767400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin 1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1NB34|I1NB34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0767400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134015072..134021503) extracted from Lotus japonicus Gifu genome v1.2.
AACAAACAATCACTCTCCGGCATTCTTCAACCGTCTTGCTTCACAATCCGACGAAGATTTCCTGATCAACGTCGCAACAG TTAGGGTTAGCACGTCTATTTCACTCTCTAAAATCTTCAAACATCGCGGCTGATTTTCTTTTATTCTTTTTAATTATTTA CTATATTTTGTTGATGATCGCGCCGCCTGAGCCTCCAGGGTTTAATCTTTGCAATTTGTGTATTGTTATTTGAAACATAT GCAATGTGTTGAGCAATGTGCATTATTCGAAATCAATTCAATCATATTATAGGGCTGATTTTCATTATTTATGTGTGTGT ACTGTTATACTATACTATAGTCTGAATGTTGTTGATGTTTCTGCAGTCACAATGGTGAAGGAGACGCTAAGTTTTGAGGA AGGCTGGGGCAATATGCAGAAGGGGATCACCAAATTGAAGAGAATTCTGGAAACGAAAGAAGATAATTTCGATTCAGAGC AATACATGATGCTGTACACGTATCCTTTATCTTTGATTCAGTTATTGACATTGTTGCTGTAACAGTTCTTTTGTTGTTTC GTTTTTTACTCTCAGTTTTGGACTTTTTTTTTTCCTTAAGTCAACCATCACAGAACAATCTATAACATGTGTACTCAGAG GGCTCCGTGTGATTATTCACGAAAGCTTTATGACAAATACCAAGAGTTTATTGACGAATACCTTACATCTACCGTAGGGA AATCTCCCGCCTTTATGTTTTAAGGACTTTGGTTTTGTTGTCATATATAATTTACTTAGTCTGATACTTTGTGTTTCAGG TTCTTCCAATTCTGAGAAAGAAGCATGATGAGTTCTTGTTGAGGGAACTTGTCATAAGATGGGAAAACCATCAACTTATG ATCAGGTGGCTTCAGCGTTTCTTCAATTATCTTGATCGCTACTTTGTTACTAGGAACTCCCTGCCTAGTCTCAAGGATGT TGGTCTTACTTGCTTCTTTGATTTGGTCAGTTACTGATCTCTTTAAGCAATATCTTTTAGATTTCTTATAATCTTATCCA TGACTATGCATTGATGGGAAATACTAGTGTATGCTCCAGTTATTTTTTTTATGTACAGTTGAATTTATTCAAGTCTACCC AATTTTATTACAGGTTTATAAGGAACTACGAACTAATGTCAGGGAAGTTGTGATTGCTTTTGTAAGTGTGCCATTTTACA TTGTGTTGATATGATTTGTTGGTGATGGGTGCCCTCTGGAATAACCTTGGCTTTTGTTACAGATTAACAAAGAGCGTGAG GGAGATCAGATTGATAAATCATTATTGAAAAATGTTCTTCGTATATTTGTTGAGATGGATAAGGGTGAAAAAGCACACTA TGAAAATGACTTTGAGATCCAAATGCTTGAGAATACTGCTGATTACTACAAAACCAAGGCTGCAAACTGGATTGAGGTTG ACTCCTGTCCAGTTTACATGCTAAAGGCAAGTCTGTCTATATTCTGCCTTGGGAATTCAGATTGTTGTATCTTGTTAATT GATATTTGTAATAATTTGTATCCCTTTGAGTACACAGGCTGAGGATTGCTTGAGAAAGGAGAGAGAAAGAGTACCTCATT ATTTGCACTCTAGCACTGAGCAGAAATTAGTAGAGGTCAGCATAAACTATTGAACTTTTTTTGTTTGTTTTTAATAAAAA AATATTGGGTGAAAGATGATAAAAATGTTCACAGGTTCTGTTTTTTGTTATATCCATTTATTTCTACAATTGCAGCAGAT ATTAACTGCTTAATTTTGATAGTTAGGACATAGGATGTGAAAAACTTTATACCTGTTTATGTTTACATGAGTTGTACTTG TTACATAGATTACAAAGTATGGAAAGCGCATGTTACTATTATGTATGCTCAACTAAGTTTGAGGGATGAAGTTTCAATAA TAAATTGTAGCGGAAAAATGGTGATCAAATTTATTCAAAGACAAGTTTGCTTATTATTTAAGTTGTTCCCTTTACTTCTT ACTAAAAAGATTTGAAAATTTGACTGAGGGAGATGTCAACCGTAGGATTTAAGTAGGATGTATGATGTGGAGGAAGGGCT TCAGGCATTATTTGTGTTAGAAAAGTACCTCAATTTAAAATAGAAAATTTTATTGTATAACTAACTATAAGATGCCATGA TACATGGGACTGAATGTTGAGTAGCAAATGGCTAATGAGAATTTAAGCTCAGTGTTATGGAGATTAGAATGTTAAGATGA ATGAGCGGTTACGTAGGACCAAATAGGATTGTAAATACAATCATTAAGGAAAAAGTTTGTGTTGTTCTATTGTAGAAAAA AAGTGTAGACTCTTGTCTTAGGTGGCTTTGAACATGTATGTAGCAAAATCCTGGAAGCACCGGTAAGGAGGGTTGACTAA ATGGACGAGCTGGAGGGTAGTCAAATAGGTAGAGGTAGAATGAGACCAAGGAAACCTTTAAGTCAAACAATTGAAAGAAA TTTAGAGGTAAATGTTTCATCTTTGAACTTAATATATGGCATGGCATCTGGATGTCATGTGATCCATGTAACAGGCTCCA CCTAACTGGAAAAAAGCATGGCTGTTGTTGTATTGGAAGTTTTTTTCCCTTACTCCTAGTTTCCTGTTAGAATTATTCCC CTATATATAATGCATTGATTTGTTTTCTTATTTTCCATTTTAATAGCAAGTGGAAAATGAATTGCTGATAACACATGTAA GTCAACTACTTGAGAAGGAGCATTCCGGCTGTCATGTCTTGCTTAGAGATGATAAGGTACTTGCCTGCTTTGCATTTCTC TGCCTGATGATGTTTACTCAGTTTTTTTTGTTACAATTAAAGCTTTAATATAAGATTTGACATGGCTGAAAACCCCTTTG TTTCCATCATATTGTTTAAATACTATGTTGTCATGTTTGAGTTGCAGAACCTTGCAGATTTCAAAAAAATATCCCTATAG TTGAAATGCTATTCTACTTTGCAACACCCAGACAAAATAAAAAATTTACAACAATTATTAGATAATCTTTCCAAAATGGC CACCTAATCATTTTACCTATTCATATACTGGTTACCTATCTTCTTGATTTGTTTTATGTCTAGGTGGAAGATCTCTCTAG GATGTTCAGACTTTATAATAAAGTACCTCAAGGCTTTGATCATGTGACCAGTGTATTCAAAAAGGTTGGTTTCTTTAGTT TTTGCATTAGAATCTGCGATCAAATTGAGCCTCTTTGTTTTTAGTATTTTTTCAATGCTGTATTATAATGGTTGTCTGTT TGCAGCATATTACAAATGAAGGTACAATATTGGTCCAACAGGCCGAGGAAGCTGCTAGCAATCAGGTTTACTACATGCTT GAACAATCTGATTGCATTGATATTTAATCTTCTTCTTCTTGACGCTTTCATCGAAGTCTTAAGTGGATTGATTGCTATTA TGTCATCAGAAGATTCTTTTTGCAGTTAGCATATGGGGCAAGGGTTCCTTTAATATTATTGTCAAACCACCTGATGCTTT TTGGCATATTTTATATTTTTTGACTTGCTCTGTTTGATTGAAGCATGCTGAACTGATATCATTTTCTACTTACTAGTTCT ACAAATATTACTGCATTCAATTTGCCTTGAGAGATTGGTTGTTGCTAATTGCTGACAGTTTTTTCTTTTTCTTTTTCTCC AGACTACAAGTGGTTCTGGCATTCAGGAACAAGTAAGTCTCCCCAGCTTTTTTTTTTTTTTTCCTAATTATCCATTGTAT CAATAGCTGGAAAGGTGTGAAGTTTAATCATTTGACATTGCAGGTCCTTGTCAGAAAATTCATAGAGCTCCATGACAAGT ACATGAACTATGTTAATGATTGCTTTATGAATCACTCACAGTTTCACAAGGTTTGTTGAGGCGATCACTGAGTTATTTTA TTTCCTTTGAATAACTTACTAAATAATAGAGTTATTTATATTAAATAGTTTATTTGATTTTGGTTGCTATGGACCAAGTA GGGTGGATTCAGCCACTATAGCTAGGGCTCTCAGTTTTGGGAATTGAGAGATTTCTTTATGTTGTACCTTCCCTTGTTTT CTTTTCAATACATGGCAATTCTTTCCCGAAATCCACACGTCGCTACAGTTATTTGGAAGTTCATTTTCCAATAAGTATTT CGAGGAAATTCAATGTGTGTTTTATCTAAATCCATCTCCTTCACAGGCATTAAAGGAAGCATTTGAGGTATTCTGCAATA AAAATGTTGCTGGTAATCCCAGTGCAGAGCTGTTGGCTACATTCTGTGACAATATCCTTAAAAAGGGTGGTGGAAGTGAG AAGCTGACTGCGGAAGCAACTGAACAAACCCTTGAGATGGTAGCTTTTAGGTTTCCTTCGTCAGATTTTTACATCATTAT GATTTGAGTTACTGAAATTGTTTAACATCTACAGGTAGTCAAGCTGCTTGCATATATCAGTGATAAGGATCTCTTTGCAG AATTTTACAGGTAATAATTTTTTGTTTTATTTTTTTTTATTATGTATATATTTTCTTATGTTTTAAGCTCCATATTTTTT TGTGAAGCCATTCTTAGCTATTTTATATTTGCAGGAAGAAGCTTGCCCGCAGATTACTTTTTGACAGGAGTGCCAATGTG GACACAGAGAAGACTGTTTTGACTATGTTAAAGCAGCAATGTGGTGGCCAGTTCACATCAAAGATGGAGGGAATGGTCAG TTGGCTTTGAGCCTGTTTTGTTTTGGATCAATGAGCACTTATTGGAACTTCTTTAGTGCTTTATCTAGCAGACAAGCTCC AATAAGTGCTCTTTACTCTTTAATTTGTATCCAAACGAGATCTTTGTTGCCAGGCTATCTCACACTTAGTTGTCCCTTTT TAACTTTGATAATTTGAGGATTTATTGAAAGTATGTTAACTTTCAGATGAACGACCATACAATGGCTCAGGAAAATCAGA TGAGATTCCAGAATTATCTAGATTTTGGCATTAACTCCCATGAAAAAACTGGAGTTGACAGCCTGACAATTACAGTTCTT ACCACAGGATTTTGGCCAAGTTATAAATCTTCTAATCTCACTCTCCCTTTAGAGATGGTAAGACCGTATTGCTGATGCAG TTATTTAAGTTTCCATTGTCGTGTTATTTTGTGATGAAGGTGGACTGTCTTCATTAATACTCTATTATGGTAATTTTTTT GTTTCAGGCCAAGTGTGTGGAAGTTTATAAGAATTTTTATGAAAGGGATGCAAGAAAGAGAAAACTTACATGGATTTATT CACTGGGAACTTGCAACATCTCTGGCAAGTTTGAACCAAAAACCATTGAACTAGTTGTGTCAACCTATCAGGTATTTCTA TTATGCTCTGAATATTATGACACTTAAGTATTTAAGTCTATGAACTCATGCTTAGGGATTGAAAATTGTATGTTTTACAG GCTGCTGTTCTGCTGCTATTCAACACTGCTGATAGGTTGACCTATTCAGAGATCATGACTCAGCTGAACTTGAATCATGA GGACCTTGTTAGAATACTCCATTCCCTGTCATGTGCAAAATATAAGTTACTGATTAAGGAGCCGAACACTAAAACTATAT CTCAAAACGACAGCTTTGAGTTCAACTCCAAATTTACAGATAGAATGAAAAAGATAAAGGTCTGTTTTTACTTTCAGTCA TAACCCATATTTTGTTGTATTTACCCAATACATATGATAAATGTGGTAAATCTGGCACTTTTGATAACAGATCCCTCTGC CGTCGGTTGATGAAAGAAAGAAAATAATTGATGATGTTGACAAGGATAGGCGGTATGCTATTGATGCAGCTATTATGCGA ATTATGAAAAGTAGGAAAGTTTTGGCCCATCAACAATTAGTCTTGGAGTGTGTTGAGATGATGAGCCGCATGTTCAAGGT AGAAAAATGCGTGAATTAATTTATTGTTGTCAATGTGAATTGCTTTTTAGTGCCATAAAGATATTGGTTAGCTGCATGAT TTTATTTTCTGTACTTTCTCAATTTATAATTTTTTGGAATTGAATTTATAGCCTGACATCAAAGTAATCAAGAAGCGGAT TGAGGATCTTATCGCCCGGGAGTACCTGGAAAGGGACAAAGACAACGCGAACACCTTCAGGTATCTGGCGTGATGAAAGC TACAAATGTACAGTAGCAAGGATTGAGGGCTGCAAATGAGAACTGAGATTTTCTGATTTTGATTTCTAGGAAGGTTTAAA TTGAGAATTCTTCAGGTTACAGAATACTGTAAATGCTGGTAGTTGATTGTGAGTTGTGACCTTTAAAGAGTTAGCTTCAG TCATTTTAGTTGGATATATATATATATATATACACACATACCATTGACATTTTATCAGTGTTTCAGAAACTTCGACTGTA CTATGCTTGAATCAATAAACAATAAATTTGAA
CDS sequence (LotjaGi1g1v0767400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGGAGACGCTAAGTTTTGAGGAAGGCTGGGGCAATATGCAGAAGGGGATCACCAAATTGAAGAGAATTCTGGA AACGAAAGAAGATAATTTCGATTCAGAGCAATACATGATGCTGTACACAACAATCTATAACATGTGTACTCAGAGGGCTC CGTGTGATTATTCACGAAAGCTTTATGACAAATACCAAGAGTTTATTGACGAATACCTTACATCTACCGTTCTTCCAATT CTGAGAAAGAAGCATGATGAGTTCTTGTTGAGGGAACTTGTCATAAGATGGGAAAACCATCAACTTATGATCAGGTGGCT TCAGCGTTTCTTCAATTATCTTGATCGCTACTTTGTTACTAGGAACTCCCTGCCTAGTCTCAAGGATGTTGGTCTTACTT GCTTCTTTGATTTGGTTTATAAGGAACTACGAACTAATGTCAGGGAAGTTGTGATTGCTTTTATTAACAAAGAGCGTGAG GGAGATCAGATTGATAAATCATTATTGAAAAATGTTCTTCGTATATTTGTTGAGATGGATAAGGGTGAAAAAGCACACTA TGAAAATGACTTTGAGATCCAAATGCTTGAGAATACTGCTGATTACTACAAAACCAAGGCTGCAAACTGGATTGAGGTTG ACTCCTGTCCAGTTTACATGCTAAAGGCTGAGGATTGCTTGAGAAAGGAGAGAGAAAGAGTACCTCATTATTTGCACTCT AGCACTGAGCAGAAATTAGTAGAGCAAGTGGAAAATGAATTGCTGATAACACATGTAAGTCAACTACTTGAGAAGGAGCA TTCCGGCTGTCATGTCTTGCTTAGAGATGATAAGGTGGAAGATCTCTCTAGGATGTTCAGACTTTATAATAAAGTACCTC AAGGCTTTGATCATGTGACCAGTGTATTCAAAAAGCATATTACAAATGAAGGTACAATATTGGTCCAACAGGCCGAGGAA GCTGCTAGCAATCAGACTACAAGTGGTTCTGGCATTCAGGAACAAGTCCTTGTCAGAAAATTCATAGAGCTCCATGACAA GTACATGAACTATGTTAATGATTGCTTTATGAATCACTCACAGTTTCACAAGGCATTAAAGGAAGCATTTGAGGTATTCT GCAATAAAAATGTTGCTGGTAATCCCAGTGCAGAGCTGTTGGCTACATTCTGTGACAATATCCTTAAAAAGGGTGGTGGA AGTGAGAAGCTGACTGCGGAAGCAACTGAACAAACCCTTGAGATGGTAGTCAAGCTGCTTGCATATATCAGTGATAAGGA TCTCTTTGCAGAATTTTACAGGAAGAAGCTTGCCCGCAGATTACTTTTTGACAGGAGTGCCAATGTGGACACAGAGAAGA CTGTTTTGACTATGTTAAAGCAGCAATGTGGTGGCCAGTTCACATCAAAGATGGAGGGAATGATGAACGACCATACAATG GCTCAGGAAAATCAGATGAGATTCCAGAATTATCTAGATTTTGGCATTAACTCCCATGAAAAAACTGGAGTTGACAGCCT GACAATTACAGTTCTTACCACAGGATTTTGGCCAAGTTATAAATCTTCTAATCTCACTCTCCCTTTAGAGATGGCCAAGT GTGTGGAAGTTTATAAGAATTTTTATGAAAGGGATGCAAGAAAGAGAAAACTTACATGGATTTATTCACTGGGAACTTGC AACATCTCTGGCAAGTTTGAACCAAAAACCATTGAACTAGTTGTGTCAACCTATCAGGCTGCTGTTCTGCTGCTATTCAA CACTGCTGATAGGTTGACCTATTCAGAGATCATGACTCAGCTGAACTTGAATCATGAGGACCTTGTTAGAATACTCCATT CCCTGTCATGTGCAAAATATAAGTTACTGATTAAGGAGCCGAACACTAAAACTATATCTCAAAACGACAGCTTTGAGTTC AACTCCAAATTTACAGATAGAATGAAAAAGATAAAGATCCCTCTGCCGTCGGTTGATGAAAGAAAGAAAATAATTGATGA TGTTGACAAGGATAGGCGGTATGCTATTGATGCAGCTATTATGCGAATTATGAAAAGTAGGAAAGTTTTGGCCCATCAAC AATTAGTCTTGGAGTGTGTTGAGATGATGAGCCGCATGTTCAAGCCTGACATCAAAGTAATCAAGAAGCGGATTGAGGAT CTTATCGCCCGGGAGTACCTGGAAAGGGACAAAGACAACGCGAACACCTTCAGGTATCTGGCGTGA
Protein sequence (LotjaGi1g1v0767400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKETLSFEEGWGNMQKGITKLKRILETKEDNFDSEQYMMLYTTIYNMCTQRAPCDYSRKLYDKYQEFIDEYLTSTVLPI LRKKHDEFLLRELVIRWENHQLMIRWLQRFFNYLDRYFVTRNSLPSLKDVGLTCFFDLVYKELRTNVREVVIAFINKERE GDQIDKSLLKNVLRIFVEMDKGEKAHYENDFEIQMLENTADYYKTKAANWIEVDSCPVYMLKAEDCLRKERERVPHYLHS STEQKLVEQVENELLITHVSQLLEKEHSGCHVLLRDDKVEDLSRMFRLYNKVPQGFDHVTSVFKKHITNEGTILVQQAEE AASNQTTSGSGIQEQVLVRKFIELHDKYMNYVNDCFMNHSQFHKALKEAFEVFCNKNVAGNPSAELLATFCDNILKKGGG SEKLTAEATEQTLEMVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANVDTEKTVLTMLKQQCGGQFTSKMEGMMNDHTM AQENQMRFQNYLDFGINSHEKTGVDSLTITVLTTGFWPSYKSSNLTLPLEMAKCVEVYKNFYERDARKRKLTWIYSLGTC NISGKFEPKTIELVVSTYQAAVLLLFNTADRLTYSEIMTQLNLNHEDLVRILHSLSCAKYKLLIKEPNTKTISQNDSFEF NSKFTDRMKKIKIPLPSVDERKKIIDDVDKDRRYAIDAAIMRIMKSRKVLAHQQLVLECVEMMSRMFKPDIKVIKKRIED LIAREYLERDKDNANTFRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 137 | 137 | 4.5E-35 | – | |
| PANTHER | 3 | 741 | 739 | 0.0 | – | |
| PANTHER | 3 | 741 | 739 | 0.0 | – | |
| SUPERFAMILY | 6 | 377 | 372 | 1.26E-99 | ||
| Pfam | 12 | 644 | 633 | 9.0E-172 | ||
| Gene3D | 138 | 260 | 123 | 6.8E-36 | – | |
| Gene3D | 263 | 382 | 120 | 3.0E-38 | – | |
| SUPERFAMILY | 382 | 657 | 276 | 1.57E-82 | ||
| ProSiteProfiles | 382 | 616 | 235 | 48.267 | ||
| Gene3D | 383 | 494 | 112 | 1.4E-33 | – | |
| SMART | 414 | 566 | 153 | 4.5E-57 | ||
| Gene3D | 505 | 656 | 152 | 8.4E-49 | – | |
| CDD | 585 | 686 | 102 | 6.88508E-4 | – | |
| SUPERFAMILY | 654 | 741 | 88 | 1.36E-26 | ||
| Gene3D | 657 | 741 | 85 | 1.9E-29 | ||
| SMART | 668 | 735 | 68 | 1.6E-31 | ||
| Pfam | 671 | 733 | 63 | 9.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi1g1v0767400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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