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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0011500 |
| Transcript ID | LotjaGi2g1v0011500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:4264301..4265202) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAGCACCTGGCATCAATATTCGGCACCGAGAAGGACCGCGTTAACTGCCCCTTCTACTTCAAGATCGGCGCCTG CAGACACGGCGACCGCTGCTCTCGCCTCCACAACCGCCCCAGCATCTCCCCCACCCTCCTCCTCGCCAACATGTACCAGA GACCCGACATGATCACCCCCGGCGTCGACCCACAGGTAAAACTGAATTCTGTTACGCTCAACAAATTCAGTTACATTCAC CGTTTTAATGGCGGTTTTTTTATTTGCAGGGCCAGCCTATCGATCCGCGCGAGATTCAGCAGCACTTTGAGGATTTCTAT GAGGATATCTTCCTCGAGCTTTCGAAATTCGGCGAGATTGAGACGCTCAATGTCTGTGATAACCTTGCCGATCACATGAT CGGCAATGTTTATGTGCAGTTCCGGGAGGAGGATGAGGCTGCCAAGGCGCTTGCCGCGCTGCACGGGAGATTTTACTCCG GGCGGCCGATCATTGCTGAATTCTCGCCTGTTACTGATTTCCGTGAGGCGACTTGTAGGCAGTATGAGGAGAATAGCTGT AACCGCGGTGGTTACTGCAACTTCATGCATGTTAAGCTGATAGGTAGGGACCTGCGGAGGAAGCTTTTTTCATCGCACTC TTTCAGGATTAGGAGCAGGAGTCCGGTTCGTCGGAGCAGGAGCAGGAGTCCGCCCCGACGCAGAGGGAGTATGGATCGCG AGAGGCGTCATAGGGACAGGGATTATGATTCTCGAGGGAGGAGGAGCAGTGATAGGAGAAGCAGTGATAGGGATGGTGGG GGAAGGAGGAGGCATGGTGGGAGTCCGGCGAGGGAAGGGAGCGAAGAACGGCGAGCCAGGATCGAGCAATGGAATCGAGA AAGGGAAGGGAAGCTGGAGTGA
CDS sequence (LotjaGi2g1v0011500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGCACCTGGCATCAATATTCGGCACCGAGAAGGACCGCGTTAACTGCCCCTTCTACTTCAAGATCGGCGCCTG CAGACACGGCGACCGCTGCTCTCGCCTCCACAACCGCCCCAGCATCTCCCCCACCCTCCTCCTCGCCAACATGTACCAGA GACCCGACATGATCACCCCCGGCGTCGACCCACAGGGCCAGCCTATCGATCCGCGCGAGATTCAGCAGCACTTTGAGGAT TTCTATGAGGATATCTTCCTCGAGCTTTCGAAATTCGGCGAGATTGAGACGCTCAATGTCTGTGATAACCTTGCCGATCA CATGATCGGCAATGTTTATGTGCAGTTCCGGGAGGAGGATGAGGCTGCCAAGGCGCTTGCCGCGCTGCACGGGAGATTTT ACTCCGGGCGGCCGATCATTGCTGAATTCTCGCCTGTTACTGATTTCCGTGAGGCGACTTGTAGGCAGTATGAGGAGAAT AGCTGTAACCGCGGTGGTTACTGCAACTTCATGCATGTTAAGCTGATAGGTAGGGACCTGCGGAGGAAGCTTTTTTCATC GCACTCTTTCAGGATTAGGAGCAGGAGTCCGGTTCGTCGGAGCAGGAGCAGGAGTCCGCCCCGACGCAGAGGGAGTATGG ATCGCGAGAGGCGTCATAGGGACAGGGATTATGATTCTCGAGGGAGGAGGAGCAGTGATAGGAGAAGCAGTGATAGGGAT GGTGGGGGAAGGAGGAGGCATGGTGGGAGTCCGGCGAGGGAAGGGAGCGAAGAACGGCGAGCCAGGATCGAGCAATGGAA TCGAGAAAGGGAAGGGAAGCTGGAGTGA
Protein sequence (LotjaGi2g1v0011500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLANMYQRPDMITPGVDPQGQPIDPREIQQHFED FYEDIFLELSKFGEIETLNVCDNLADHMIGNVYVQFREEDEAAKALAALHGRFYSGRPIIAEFSPVTDFREATCRQYEEN SCNRGGYCNFMHVKLIGRDLRRKLFSSHSFRIRSRSPVRRSRSRSPPRRRGSMDRERRHRDRDYDSRGRRSSDRRSSDRD GGGRRRHGGSPAREGSEERRARIEQWNREREGKLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 273 | 273 | 1.6E-145 | ||
| PANTHER | 1 | 273 | 273 | 1.6E-145 | – | |
| ProSiteProfiles | 12 | 40 | 29 | 13.065 | ||
| SMART | 13 | 39 | 27 | 0.0068 | ||
| Pfam | 14 | 38 | 25 | 2.8E-7 | ||
| PRINTS | 18 | 37 | 20 | 4.1E-64 | ||
| PRINTS | 37 | 57 | 21 | 4.1E-64 | ||
| Gene3D | 43 | 145 | 103 | 7.2E-32 | ||
| CDD | 44 | 145 | 102 | 1.24429E-66 | – | |
| ProSiteProfiles | 44 | 146 | 103 | 11.452 | ||
| SMART | 73 | 142 | 70 | 2.1E-7 | ||
| PRINTS | 75 | 90 | 16 | 4.1E-64 | ||
| SUPERFAMILY | 77 | 149 | 73 | 2.99E-17 | ||
| Pfam | 83 | 139 | 57 | 3.6E-6 | ||
| PRINTS | 103 | 125 | 23 | 4.1E-64 | ||
| PRINTS | 130 | 154 | 25 | 4.1E-64 | ||
| ProSiteProfiles | 148 | 175 | 28 | 11.498 | ||
| SMART | 148 | 174 | 27 | 0.021 | ||
| Pfam | 150 | 174 | 25 | 8.6E-5 | ||
| PRINTS | 165 | 177 | 13 | 4.1E-64 | ||
| MobiDBLite | 195 | 275 | 81 | - | – | |
| MobiDBLite | 207 | 275 | 69 | - | – | |
| Coils | 263 | 275 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Cellular component | U2AF | A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point. |
Expression pattern of LotjaGi2g1v0011500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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