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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0098800 |
| Transcript ID | LotjaGi2g1v0098800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0B2QXG3|A0A0B2QXG3_GLYSO TMV resistance protein N; Found in the gene: LotjaGi2g1v0098800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32428602..32434014) extracted from Lotus japonicus Gifu genome v1.2.
TCATTCTCTCTCTTCACTTTAACTCAATAATAAATAAGGGTGTTTATGTCAACAAATATATCAATAATTGCACTCTTAAA CAATGTGCATAACCTTAAACAACAAAAGATCAGGAACGGAGAGAGTATATATATATAAAATTTCCATCATTGACTTTGTG AAGCGATAACAAATCCCTCTGTCACTTATGTCACCTGACAGGTTGTCCAAAATATTTTATTACATTAGGTTGGTGAATAT GCAATTTCGATCTACGTGGTTCATATGCACCCCTAAGAACAACTATGAATTTCTAGAATGGAGGTTGGTGAATGCTAGAA AATAAATTAGCAAATTAATTATCTAATTCCTCAATGTCAAATATGGCGTGCTTAAGTAATATATATCCTCCGTTCCTGAT CTTTTGTTGTTTTAATTTTTCTCAATTTATTCATTGTATACCCTCATTTAATACTATATCTCTCACCTACCACATCTTAT TTTCACCAATCGAAATCATAATAAGTTTCTTAACAAAACACTATCATTCTCTCTCTTCACTTTAACTCAATAATAAATAA GGGTGTTTATGTCAACAAATATATCAATAAATTGCACTCTTAAACAATGTGCATAACCTTAAACAACAAAAGATCAGGAA TGGAGAGAGTATATATATATATAAAATTTCCATCATTTACTTTGTGAAGCGATAACAAATCCCTCTGTCACTTATGTCAC CTGACAGGTTGTCCAAAATATTTTATTACATTGTCAGATTTCAATGACTAATACATAGCATTACTTTGCAAAATATGTGT AGAAATCTCGGGCTTCTCTCTCTTCTACGCGTTGCCTTTGCATTCTTTTAATTTTTTAGATCACAAAAAAAAGCATTTGC TACGCTACGCTGTATATAGTTTTGTAGTCCATCAGTTTCATGCTTTTTAAATATTTCTTAGAATTTTGAGACTCACACAC ACCATTCATATTACCAAGCTTTCTTCTAATGGCTATGCTACCATCATCCTCCTCCTCTTCCATCACCTATGCATTCTCGT ATGATGTGTTCCTCAGTTTCACCGGCTGTGATACCCGCCAAGGTTTTACTGGCAATCTCTACAAAGCTCTGGATGATAAG GGAATCCACACATTTATTGATGACAAGGAGCTTCACAAAGGGGACGAAATCACCCCAGCACTTGAGGAGGCCATTGAAAA ATCTAGGATTGCCATTGTTGTGCTATCTAAGAACTACGCATTTTCTTCTTTTTGCTTACATGAACTTTTGAAAATACTTG AATACTTTAAGAAAAATTGTCGCCTCGTTTGGCCTATATTTTATGATGTGGATCCGTCTGATGTGCGAAAGCAAACAGGA ACGTATGGAGAAGCAATGACGTTGCATATGAATAGATTCAAAGATAACAAGGAGAAGTTGCGAAAGTGGAGGACAACTCT AGAACAAGTGGCTGATTTGTCTGGCTGGCATTTCAAACACGGGTACGTTTCTTATGCTTAATTTCTTTGTGTTTTAGTAT CTAATTATTACAATTTGAGTTATAGTAAATAAGTACTAAAAAGAAGGAAATGATGCATTATTATGACTTTATACAAAATC ACTTATCTTGTTGGGCAGAGATGGATCATATGAACACGAGTTTATTGGAAAGATTGTTTCTGAGGTCTCAAGAAATATTA ATCGTGTAGCTTTACCTATTGCTGACTACCCAGTTGGACTAGACTCTCAAGTGAGGGAAGTAATTTCACTTTTGGATGTA GGATCTGATGATAAAGTTCACATTATAGGGATCCATGGAATAGGTGGGATAGGTAAAACGACACTTGCTCTAGCAGTTTA CAACTTGGTTGCTGACCAATTTGAAGGTTTATGTTTTCTCGAAAATGTCAGAGAAAGTTCAAATAAACATGGGTTACTTC ATGTGCAAAAAACCCTTCTTTTCGCTGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCAAGCAGGGAATTTCAATA ATAAAACATAGGCTCCAACAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGCCGAGGAAGAGCACCTGAAGCAAGTTGT TGGAAGCCCTAGTTGGTTTGGTCTTGGTAGTAGAGTCATCATTACGACTCGGAATAAACACCTTCTAGAATGCTACAAGG TCGAAAGAACTCATGAAGTCGAAGAGTTGAACAAGAAGGCCTCTTTTCAATTGCTCAGATGGAAAGCTTTTAAAAATGAA GAAGTTAGACCAGGTTATGCGGACTTGTTAAACCGTGCAGTGGCGTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAAT AGGTTCTAACTTGTGTGGAAAAAGTGTACAACAATGGAAATCTGCACTAGAACATTATGAAAGGATTCTTGATAAAAAGA TTCAAAAGATACTCGAAGTGAGTTTTTATGCTTTGGAGGAAAAAGAGCAGTGTGTTTTCCTAGACATTGCTTGTTGCTTA AAAGGATATAAATTTGATGAGGTCATAAGTATACTCAATGCTCATCATGGCCAATGCATAATATATCAAATTGGAGTGTT GGTTGATAAATCTCTCATAAAGATTAATTGGTATGATCAAGTTACATTACATGACTTGATGGAACGCATGGGTAAAGAAA TTGTGCGGCAAGAGTCACCAGGAGAGCCTGGAGGATGCAGCAGATTATGGTCTAAAAAAGATATATTTGAAGTTTTGGAA GAAAATACGGTAAGATTAACATATGATTTTTTTTTTATCTTTTATCTTGATTTATCTTTTTTGATTAATCTGAATTCACA GCTATGATTTTTTCCTTTAGAATATTTGAATGTCTCTAAGTCCTCGTGTAGTCCTTGAATGCAACTTATTTTATTTTATT TATCTTTTTTATGTGTTAAAAGGGAACCAACAAAATTGAAATGATACATCTTGATTACGCGTCAATTGAAGTAGTGGATT GGGAAGGAGAGGCTTTCAAGGAGATGAAAAAGCTCAAAACACTTATTATTAGAAAAAATAATTTTTCTAAAGGTCCAAAG TATCTTCCTAATAGTCTAAGAGTACTGGAGTGGTGGAAATATCCTTTACAACATTTGCCAAGTGATTTTCATCCAAATAA ACTTTCCATATGCAAATTACCTGGAAGTAGCTTTATGTCTCTGGAGTTTCTATGTTTATCAAAGGTAAGTATGATAATCA TTTCATATCCGCGATCTCGTGTATAAGGATATTTATTTTTCTTTGTTGATGATTTCATATCCTTGCTAACTTTCCTTTTC GTTCTTCTTTCATTGTTTTCCTTTGTTTGATTTTTTTTTAGCAGAAGTTGGTGACAATGAAAGTTTTAAATCTCAACAAT TGTCGATATTTAACACAGATACCAAACCTATCTAATCTCCCAAATTTAGAAGAGCTTTCATTTGAATTTTGTGGAAATTT AATTACAATTGACCATTTAGACTGGTCGTTGGACAAACTTAAAATCTTGAGTGCTACTGCATGCTCCCAGCTTAGGAGTT TTCCACCTCTCAAGTTGCCCTCTCTTGAAAAACTCAAGTTGTCAAGTTGCTCAAGTCTTGAGAGTTTTCCAGAAATATTA GAAAATATGGAAAAAATAACCGAGCTGGATTTAGACAAGACCAACATGACAAGATTTCCATCTTCATTTCGAAATCTTGC CGGACTTAAAAAATTAGAAGTGACTCAATTGCTACCATCAAGGAGCTTAGTCTTGATGCCACAGTTGGTAAAACTCTCCA TCTTAAAGTCGTCAGGGAGAATATTGGAAATAGAGGGTGATGAAAATATGAGCTCAATGTTCCAGTCTTCAAATGTAGAA CATATTAAGTTCTCATGCTGCCACCTGTCATATGAATTTTTGGCATCAGTTCTTCCGTTGTTTGCTAACTTGAAAGAACT AGACCTAAGACAGAGTGAGTTCACAATTGTTCCTAAATGCATCGAACAATGCCGCATTTTAAGGACTCTTCTCTTGAATG ATTGCAAGCAGCTTCGGGAAATTGAAGGGATTCCACCAAGCTTAAAAATCTTATCTGCAATAGGATGTGAATCCTTGAGT TTATCTTGTAGAAGCATGTTGCTGAAGAAGGTTAGGCTTTTATTTTTATTTGATTTGTTATGTTTTGAATGTATTTGATC TGATCATTAATCTTGTGCGCTAAAACAGGAACTACATGAGGTTGGAGGCACAGACTTCGAATTGCCAAGCCTTCCATATG AAGAGTTATATGGTTTTAACCCGATTCCAATGTGGTTTAAGCACGGGGACGCAGGTTATATGGTTTTAATCCCGTTTTTC AACCACTTTATCTTCTGCATTTGTTTTCCGTATGGGAAGGAATATGGTGAGGTAAAGATCATGCTCAATAATGAGGTAAT TACAGAGGTTTATGTAACTGGGGGTCATATACGTCTTGTTAGTGTTATGATCAACAGTAAAGATGAGGAGAACCATTTGG AAGTTCAGTGCTTATCTAAAGAAAAAAAATTGGAAGTTCAGTCTATATCTTCATTGAATTATGATTTCGTTTGTGGAATA CATCCATTGACATGAAAGATCAGAGAAGAAGAAATGCAGCATAGAAAGAAGAACTTCAAAGTTAACCGCTGATTAGCTTG GTGCCTAGGTCCAAAGTTCATAATCAATAGCACAATTGTTCGTTTGTCCTCATGGAACAAAAATAGAGAAATCAATGAAA TATTGAAGGAAATATGTATGAGGTAACCACTATATGTTGGATATTTGATGGATTAGCATTAATCATTTAATTAAAATATG TAATCTTTGAAGTATTAATAGTATTAAAATTAGTGGAAATTAATATTAATTATAGCGCTTAAAATCACTTAATGGATAAT TTGGTTTTTCTTATGAATGACTTATGATGAGTTACGTCCAAGGTTGTTAATCTCTAGAGATTACATAATCTCGTGGAGGA GAGGTAATCTCGTAACATAATATCGTAACGTAAACTCACCTCATGCAAAAATAATACTTTTAAAGTCATAATAATGACGA AGTCAAATTTATAGTATTAAAAATTATCTGAATCATCCAATAACAACAATTAAAACCATGCATAAAATTAACCAATATTT AAATCTAAAGTACCTAAGTCATAAAAAATTAACAAAATATCAATACAAATTATGATAAATGTAAGCCAAGAACAAATAGG TCACTAGAAGTTATGTGAGTTGCACGAACAGTGGCTGTGAATGCAAGAATGAGGATTGATTTTGTTAAAAACCTTAAATA GGTGGGTTAAATGTTTGAAATGTCCATGTATTACTCATTTTTTGATATTTCAGATCAAATAAGCTAATCTCGAAATCTCG TGGTAATCTCGCGATATTACAAGAGATTAAGAGATATCTTTAGAGATCATCTG
CDS sequence (LotjaGi2g1v0098800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGCTACCATCATCCTCCTCCTCTTCCATCACCTATGCATTCTCGTATGATGTGTTCCTCAGTTTCACCGGCTG TGATACCCGCCAAGGTTTTACTGGCAATCTCTACAAAGCTCTGGATGATAAGGGAATCCACACATTTATTGATGACAAGG AGCTTCACAAAGGGGACGAAATCACCCCAGCACTTGAGGAGGCCATTGAAAAATCTAGGATTGCCATTGTTGTGCTATCT AAGAACTACGCATTTTCTTCTTTTTGCTTACATGAACTTTTGAAAATACTTGAATACTTTAAGAAAAATTGTCGCCTCGT TTGGCCTATATTTTATGATGTGGATCCGTCTGATGTGCGAAAGCAAACAGGAACGTATGGAGAAGCAATGACGTTGCATA TGAATAGATTCAAAGATAACAAGGAGAAGTTGCGAAAGTGGAGGACAACTCTAGAACAAGTGGCTGATTTGTCTGGCTGG CATTTCAAACACGGAGATGGATCATATGAACACGAGTTTATTGGAAAGATTGTTTCTGAGGTCTCAAGAAATATTAATCG TGTAGCTTTACCTATTGCTGACTACCCAGTTGGACTAGACTCTCAAGTGAGGGAAGTAATTTCACTTTTGGATGTAGGAT CTGATGATAAAGTTCACATTATAGGGATCCATGGAATAGGTGGGATAGGTAAAACGACACTTGCTCTAGCAGTTTACAAC TTGGTTGCTGACCAATTTGAAGGTTTATGTTTTCTCGAAAATGTCAGAGAAAGTTCAAATAAACATGGGTTACTTCATGT GCAAAAAACCCTTCTTTTCGCTGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCAAGCAGGGAATTTCAATAATAA AACATAGGCTCCAACAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGCCGAGGAAGAGCACCTGAAGCAAGTTGTTGGA AGCCCTAGTTGGTTTGGTCTTGGTAGTAGAGTCATCATTACGACTCGGAATAAACACCTTCTAGAATGCTACAAGGTCGA AAGAACTCATGAAGTCGAAGAGTTGAACAAGAAGGCCTCTTTTCAATTGCTCAGATGGAAAGCTTTTAAAAATGAAGAAG TTAGACCAGGTTATGCGGACTTGTTAAACCGTGCAGTGGCGTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGT TCTAACTTGTGTGGAAAAAGTGTACAACAATGGAAATCTGCACTAGAACATTATGAAAGGATTCTTGATAAAAAGATTCA AAAGATACTCGAAGTGAGTTTTTATGCTTTGGAGGAAAAAGAGCAGTGTGTTTTCCTAGACATTGCTTGTTGCTTAAAAG GATATAAATTTGATGAGGTCATAAGTATACTCAATGCTCATCATGGCCAATGCATAATATATCAAATTGGAGTGTTGGTT GATAAATCTCTCATAAAGATTAATTGGTATGATCAAGTTACATTACATGACTTGATGGAACGCATGGGTAAAGAAATTGT GCGGCAAGAGTCACCAGGAGAGCCTGGAGGATGCAGCAGATTATGGTCTAAAAAAGATATATTTGAAGTTTTGGAAGAAA ATACGGGAACCAACAAAATTGAAATGATACATCTTGATTACGCGTCAATTGAAGTAGTGGATTGGGAAGGAGAGGCTTTC AAGGAGATGAAAAAGCTCAAAACACTTATTATTAGAAAAAATAATTTTTCTAAAGGTCCAAAGTATCTTCCTAATAGTCT AAGAGTACTGGAGTGGTGGAAATATCCTTTACAACATTTGCCAAGTGATTTTCATCCAAATAAACTTTCCATATGCAAAT TACCTGGAAGTAGCTTTATGTCTCTGGAGTTTCTATGTTTATCAAAGGTAAGTATGATAATCATTTCATATCCGCGATCT CGTGTATAA
Protein sequence (LotjaGi2g1v0098800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMLPSSSSSSITYAFSYDVFLSFTGCDTRQGFTGNLYKALDDKGIHTFIDDKELHKGDEITPALEEAIEKSRIAIVVLS KNYAFSSFCLHELLKILEYFKKNCRLVWPIFYDVDPSDVRKQTGTYGEAMTLHMNRFKDNKEKLRKWRTTLEQVADLSGW HFKHGDGSYEHEFIGKIVSEVSRNINRVALPIADYPVGLDSQVREVISLLDVGSDDKVHIIGIHGIGGIGKTTLALAVYN LVADQFEGLCFLENVRESSNKHGLLHVQKTLLFAVLGEKEIEITSVKQGISIIKHRLQQKKVLLILDDVAEEEHLKQVVG SPSWFGLGSRVIITTRNKHLLECYKVERTHEVEELNKKASFQLLRWKAFKNEEVRPGYADLLNRAVAYASGLPLALEVIG SNLCGKSVQQWKSALEHYERILDKKIQKILEVSFYALEEKEQCVFLDIACCLKGYKFDEVISILNAHHGQCIIYQIGVLV DKSLIKINWYDQVTLHDLMERMGKEIVRQESPGEPGGCSRLWSKKDIFEVLEENTGTNKIEMIHLDYASIEVVDWEGEAF KEMKKLKTLIIRKNNFSKGPKYLPNSLRVLEWWKYPLQHLPSDFHPNKLSICKLPGSSFMSLEFLCLSKVSMIIISYPRS RV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 618 | 618 | - | – | |
| SUPERFAMILY | 7 | 160 | 154 | 9.68E-40 | ||
| Gene3D | 13 | 189 | 177 | 1.0E-63 | ||
| PANTHER | 15 | 629 | 615 | 2.4E-260 | – | |
| PANTHER | 15 | 629 | 615 | 2.4E-260 | – | |
| ProSiteProfiles | 16 | 157 | 142 | 29.808 | ||
| SMART | 17 | 157 | 141 | 1.5E-39 | ||
| Pfam | 18 | 184 | 167 | 1.4E-41 | ||
| SUPERFAMILY | 189 | 448 | 260 | 3.02E-65 | ||
| Gene3D | 190 | 352 | 163 | 5.4E-32 | – | |
| Pfam | 201 | 428 | 228 | 8.3E-32 | ||
| PRINTS | 220 | 235 | 16 | 5.6E-21 | – | |
| PRINTS | 296 | 310 | 15 | 5.6E-21 | – | |
| PRINTS | 389 | 403 | 15 | 5.6E-21 | – | |
| Coils | 408 | 428 | 21 | - | – | |
| SUPERFAMILY | 424 | 532 | 109 | 4.08E-23 | ||
| Gene3D | 524 | 637 | 114 | 7.5E-7 | ||
| SUPERFAMILY | 545 | 633 | 89 | 1.07E-6 | – | |
| PRINTS | 561 | 577 | 17 | 5.6E-21 | – | |
| Phobius | 619 | 637 | 19 | - | – | |
| Phobius | 638 | 642 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0098800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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