Domain Predictions — View

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IPR036621

Source: InterPro

Description

IPR036621 is a Anticodon-binding domain superfamily.

<p>tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [[cite:PUB00007363]]. It is probably the anticodon binding domain [[cite:PUB00007392]].</p> <p>Structurally, the anticodon-binding domain has three layers (α/β/α) containing a mixed β-sheet of five strands, where strand 4 is antiparallel to the rest.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 22

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0067400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp\|O04630\|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A151TGM6\|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004154 IPR006195 IPR033728 IPR036621 PF00587 PF03129 PR01047 PS50862 PTHR11451 PTHR11451:SF46 SSF52954 SSF55681 TIGR00418 cd00771 cd00860	20
LotjaGi1g1v0551900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp\|O23627\|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A072U6L4\|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900	Domains G3DSA:1.10.287.10 G3DSA:1.10.30.30 G3DSA:1.20.1430.20 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR000738 IPR002314 IPR002315 IPR004154 IPR006195 IPR009068 IPR027031 IPR033731 IPR036621 NON_CYTOPLASMIC_DOMAIN PF00458 PF00587 PF03129 PR01043 PS50862 PS51185 PTHR10745 PTHR10745:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00991 SSF47060 SSF52954 SSF55681 SignalP-TM TIGR00389 cd00774 cd00858	35
LotjaGi1g1v0688700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0688700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7KFU0\|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0754600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi1g1v0754600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi2g1v0122700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9FYR6\|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|V7C4B0\|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700	Domains G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 NON_CYTOPLASMIC_DOMAIN PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF3 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00946 SSF52954 SSF55681 SSF64586 SignalP-TM TIGR00408 cd00778 cd00862	33
LotjaGi2g1v0122700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9FYR6\|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1L332\|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700	Domains G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR004154 IPR016061 IPR017449 IPR036621 PF03129 PF09180 PTHR43382 PTHR43382:SF3 SM00946 SSF52954 SSF55681 SSF64586 cd00862	16
LotjaGi2g1v0318100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp\|O04630\|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A0S3T3W6\|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100	Domains G3DSA:3.10.20.30 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004095 IPR004154 IPR006195 IPR012675 IPR012676 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF02824 PF03129 PF07973 PR01047 PS50862 PS51880 PTHR11451 PTHR11451:SF46 SM00863 SSF52954 SSF55186 SSF55681 SSF81271 SignalP-TM TIGR00418 cd00771 cd00860 cd01667	35
LotjaGi2g1v0318100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp\|O04630\|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A0S3T3W6\|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100	Domains G3DSA:3.10.20.30 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004095 IPR004154 IPR006195 IPR012675 IPR012676 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF02824 PF03129 PF07973 PR01047 PS50862 PS51880 PTHR11451 PTHR11451:SF46 SM00863 SSF52954 SSF55186 SSF55681 SSF81271 SignalP-TM TIGR00418 cd00771 cd00860 cd01667	35
LotjaGi2g1v0318100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp\|O04630\|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A0S3T3W6\|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100	Domains G3DSA:3.10.20.30 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004095 IPR004154 IPR006195 IPR012675 IPR012676 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF02824 PF03129 PF07973 PR01047 PS50862 PS51880 PTHR11451 PTHR11451:SF46 SM00863 SSF52954 SSF55186 SSF55681 SSF81271 SignalP-TM TIGR00418 cd00771 cd00860 cd01667	35
LotjaGi2g1v0330900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	27
LotjaGi3g1v0498400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein kinase family protein; TAIR: AT3G59410.4 protein kinase family protein; Swiss-Prot: sp\|Q9LX30\|GCN2_ARATH eIF-2-alpha kinase GCN2; TrEMBL-Plants: tr\|A0A151RUS1\|A0A151RUS1_CAJCA Putative serine/threonine-protein kinase GCN2; Found in the gene: LotjaGi3g1v0498400	Domains Coil G3DSA:1.10.510.10 G3DSA:3.10.110.10 G3DSA:3.30.200.20 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR000719 IPR006575 IPR008266 IPR011009 IPR016135 IPR017441 IPR024435 IPR036621 IPR041715 PF00069 PF05773 PF12745 PF13393 PS00107 PS00109 PS50011 PS50908 PTHR11476 PTHR11476:SF10 SM00591 SSF52954 SSF54495 SSF55681 SSF56112 cd14046 mobidb-lite	32
LotjaGi4g1v0456100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|F4IYF8\|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|A0A072VJI1\|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100	Domains G3DSA:1.20.200.10 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001106 IPR004154 IPR006195 IPR008948 IPR015807 IPR033656 IPR036621 IPR041715 MF_00127 PF00221 PF03129 PF13393 PS50862 PTHR11476 PTHR11476:SF7 SSF48557 SSF52954 SSF55681 TIGR00442 cd00773 cd00859	24
LotjaGi6g1v0009800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi6g1v0009800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi6g1v0022700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp\|F4IFC5\|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|G7J9I7\|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700	Domains G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004154 IPR006195 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF03129 PF07973 PR01047 PS50862 PTHR11451 PTHR11451:SF44 SM00863 SSF52954 SSF55186 SSF55681 TIGR00418 cd00771 cd00860	27
LotjaGi6g1v0022700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp\|F4IFC5\|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|I1NAJ0\|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700	Domains G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004154 IPR006195 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF03129 PF07973 PR01047 PS50862 PTHR11451 PTHR11451:SF44 SM00863 SSF52954 SSF55186 SSF55681 TIGR00418 cd00771 cd00860	27
LotjaGi6g1v0022700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp\|F4IFC5\|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|I1NAJ0\|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700	Domains G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004154 IPR006195 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF03129 PF07973 PR01047 PS50862 PTHR11451 PTHR11451:SF44 SM00863 SSF52954 SSF55186 SSF55681 TIGR00418 cd00771 cd00860	27
LotjaGi6g1v0022700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp\|F4IFC5\|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|I1NAJ0\|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700	Domains G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 G3DSA:3.40.50.800 IPR002314 IPR002320 IPR004154 IPR006195 IPR012947 IPR018163 IPR033728 IPR036621 MF_00184 PF00587 PF03129 PF07973 PR01047 PS50862 PTHR11451 PTHR11451:SF44 SM00863 SSF52954 SSF55186 SSF55681 TIGR00418 cd00771 cd00860	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00860	CDD	1	4.55