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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036621
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We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.187s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0067400_LC.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151TGM6|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC LjG1.1_chr1 9318052 9328828 +
2 domain predictions
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LotjaGi1g1v0551900.1
n.a. Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 LjG1.1_chr1 108326725 108331427 +
2 domain predictions
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LotjaGi1g1v0688700.1
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125607215 125627467 -
2 domain predictions
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LotjaGi1g1v0688700.2
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KFU0|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
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LotjaGi1g1v0688700.3
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
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LotjaGi1g1v0688700.4
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
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LotjaGi1g1v0754600.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132761414 132767262 -
2 domain predictions
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LotjaGi1g1v0754600.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762655 132766913 -
2 domain predictions
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LotjaGi2g1v0122700.1
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130518 45136183 +
2 domain predictions
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LotjaGi2g1v0122700.2
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1L332|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130990 45135791 +
2 domain predictions
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LotjaGi2g1v0318100.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79300976 79310558 -
2 domain predictions
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LotjaGi2g1v0318100.2
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302473 79310414 -
2 domain predictions
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LotjaGi2g1v0318100.3
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302478 79310414 -
2 domain predictions
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LotjaGi2g1v0330900.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900 LjG1.1_chr2 80651732 80653697 +
2 domain predictions
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LotjaGi3g1v0498400.1
n.a. Protein kinase family protein; TAIR: AT3G59410.4 protein kinase family protein; Swiss-Prot: sp|Q9LX30|GCN2_ARATH eIF-2-alpha kinase GCN2; TrEMBL-Plants: tr|A0A151RUS1|A0A151RUS1_CAJCA Putative serine/threonine-protein kinase GCN2; Found in the gene: LotjaGi3g1v0498400 LjG1.1_chr3 91698883 91716600 +
2 domain predictions
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LotjaGi4g1v0456100.1
n.a. Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|F4IYF8|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A072VJI1|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100 LjG1.1_chr4 82758103 82765311 -
2 domain predictions
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LotjaGi6g1v0009800.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1846797 +
2 domain predictions
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LotjaGi6g1v0009800.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1847268 +
2 domain predictions
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LotjaGi6g1v0022700.1
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271283 4277318 -
2 domain predictions
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LotjaGi6g1v0022700.2
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275837 -
2 domain predictions
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LotjaGi6g1v0022700.3
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275839 -
2 domain predictions
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LotjaGi6g1v0022700.4
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275840 -
2 domain predictions
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