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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0253200 |
| Transcript ID | LotjaGi2g1v0253200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT3G28380.1 P-glycoprotein 17; Swiss-Prot: sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17; TrEMBL-Plants: tr|W9QZX2|W9QZX2_9ROSA ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71907056..71909539) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGAATGCAGTGAATATGTGTTATTTGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTTGGTGAGTTTCAGTTTTGCTA TGCCTATGATTATGCTTCTCTTTCATTTGTATGATCCATGAATATAAACTAACACCTTTACTTTGGTTGATCACTTCAGA GGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAG AAGTAGCATATTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGCGTCTCTAATGACAGCCTTGTGATTCAA GATGCTCTTAGTGAAAAGGTGAACTTTTTTTTAAGAATATTTCTTTTCCATGTCTACCTAATAAGATAAATGGGAAAAGA AATAAGAGAAATAAATGAGATGATATGTGATGTGACAAAAAATGCAAAAAAATATAAGGAAAAAAGTAAGGAAATGAGAT GAGAGAAAAAATGTTGTGTGAATGAATCATTACTCTTTTCGAAATTGGATTTACTGTGGTCCTTGTTCATGCAGTCCAGT TTTCCAGAAAAGTTCAACTTCCAAAAGTGAAAATAACTTCTCTAAATTGAACTTTCAGGAAGTGCAAAACTTGACTCCAA TAACCGGGGATCGATTGCAGTGAATCCAGTTTTTATTTTTCATGTCAGAGCATTTTCAATTTTGAATTTTAATCATTATA TTGTGCCACTAACAGAGTGAATTTCTTCCAATTTGGAAACTACACAGGTCCCAAATTTTTTGATGAATGCGTCTATGTTT ATTGGGAGCTACATAGCAGCTTTTGCATTACTATGGAGATTGGCAATTGTGGGGTTCCCTTTTATTGTTCTTCTTGTGAT CCCTGGTTTGATGTATGGGAGGACCTTGATGAGTTTGGCTAGAAAGATCAGTATAGAGTATAACCATGCCGGTACAATAG CAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGCAGGGGAAAGCAAGACCATTAATGCTTTCTCTGATGCT CTACAAGGCTCTGTGAAATTGGGGCTGAAACAAGGCCTAGCTAAAGGCTTAGCCGTAGGAAGCAATGGTCTTGTCTTTGC TATTTGGTCCTTCTTGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGTGCTAAAGGAGGGACTGTGTTTGTAGTTG GAGCCTCCATAGCCCTTGGTGGATTGTAATTACACATACCCTTTATCTCATAATTTCAAATTCATGCAATTGAACCTCAA AAGATTCAAACTTTGTGGTTATTTTTTGTATTGTGTGACAGGTCTTTAGGTTCTGGTTTATCCAATGTGAAGTACTTCTC AGAGGCGAAAACCGCTGCAGAACGCATAATGGAAGTCATAAACAGGGTTCCCAAGATTGATTCTGACAACATGGCTGGGG AGATTCTGGAAAATGTTTCAGGGGAAGTGGAATTTGATCATGTTGAGTTTGTGTACCCTTCAAGGCCAGAGAGTGTGATT CTCAATGACATGTGTTTGAAGGTTCGCTTTTATTTATTTAATTCTCTAATTTTTTTTCCTCACCACGAGGAGTTCAGTCA GTTTTCACGCACCTTGACTAATACCGCTCGTGGTGAGTGGCTGCCATTAGCCAATCAATATTTTGACAATGCCAGAAATC GATCTTTGGGAGATCCAGTTCGACCCTAAATTATATTAGTGGCAGCCTTATACCACTAAGCCAAGAAGCTTGGTTACTTA ATAGTTAATACTCAATTAATTATAATACATTATGTTTTAATCATTAATATCAATTATGTCAATTGCTAAAATAATTATAA TTTATGTATTATATGCTTTATCCTTTCCCATACAAATTAAAGTGTCTAATAGGGAACAGTTGATTCAACAGGTTCCAGCA GGGAAGACAGTGGCTTTGGTGGGAGGGAGTGGGTCAGGGAAATCAACAGTGATATCACTTTTGCAGAGGTTTTATGATCC TGTTGGGGGAGAGATAAGGCTTGATGGGGTGGCAATTCACAAGTTGCAGTTGAAGTGGTTAAGGTCTCAGATGGGTCTTG TGAGCCAAGAGCCTGCTCTGTTTGCAACTAGCATTAAGGAAAATATACTGTTTGGGAGAGAGGATGCAACAGAGGAAGAG GTTGTTGAAGCTGCCAAAGCCTCCAATGCTCATAATTTCATTTCACAGTTGCCACTTGGATATGATACTCAGGTCAGTAC TCATTTCAGTGCTGCTACTGTCAACTGCCACTAATATCTGTTCAATCCACTTTTTTATTAAACTTATTCCTACATGATCT CACTTCAATGGTTGAAAATGATCAGAGAAAAACAAAATTCTCTTTTTTCCTATCATTCAGGGTGAATGGAACATTTTTTA CCCAATATGACAAAATCATGCTTAGTGGTTCAGGTAGCCATCAATCTCAATATGCATGTTATTGATGATAACAGGAAAGT TTAG
CDS sequence (LotjaGi2g1v0253200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAATGCAGTGAATATGTGTTATTTGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTTGAGGGTTATTGTTGGACAAG AACAGGTGAAAGACAAGCTGCAAGAATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAGAAGTAGCATATTTTGATT TGCATGTCACAAGCACATCAGAGGTCATCACCAGCGTCTCTAATGACAGCCTTGTGATTCAAGATGCTCTTAGTGAAAAG GTCCCAAATTTTTTGATGAATGCGTCTATGTTTATTGGGAGCTACATAGCAGCTTTTGCATTACTATGGAGATTGGCAAT TGTGGGGTTCCCTTTTATTGTTCTTCTTGTGATCCCTGGTTTGATGTATGGGAGGACCTTGATGAGTTTGGCTAGAAAGA TCAGTATAGAGTATAACCATGCCGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGCAGGG GAAAGCAAGACCATTAATGCTTTCTCTGATGCTCTACAAGGCTCTGTGAAATTGGGGCTGAAACAAGGCCTAGCTAAAGG CTTAGCCGTAGGAAGCAATGGTCTTGTCTTTGCTATTTGGTCCTTCTTGTCCTATTATGGTAGCAGAATGGTCATGTACC ATGGTGCTAAAGGAGGGACTGTGTTTGTAGTTGGAGCCTCCATAGCCCTTGGTGGATTGTCTTTAGGTTCTGGTTTATCC AATGTGAAGTACTTCTCAGAGGCGAAAACCGCTGCAGAACGCATAATGGAAGTCATAAACAGGGTTCCCAAGATTGATTC TGACAACATGGCTGGGGAGATTCTGGAAAATGTTTCAGGGGAAGTGGAATTTGATCATGTTGAGTTTGTGTACCCTTCAA GGCCAGAGAGTGTGATTCTCAATGACATGTGTTTGAAGGTTCCAGCAGGGAAGACAGTGGCTTTGGTGGGAGGGAGTGGG TCAGGGAAATCAACAGTGATATCACTTTTGCAGAGGTTTTATGATCCTGTTGGGGGAGAGATAAGGCTTGATGGGGTGGC AATTCACAAGTTGCAGTTGAAGTGGTTAAGGTCTCAGATGGGTCTTGTGAGCCAAGAGCCTGCTCTGTTTGCAACTAGCA TTAAGGAAAATATACTGTTTGGGAGAGAGGATGCAACAGAGGAAGAGGTTGTTGAAGCTGCCAAAGCCTCCAATGCTCAT AATTTCATTTCACAGTTGCCACTTGGATATGATACTCAGGTAGCCATCAATCTCAATATGCATGTTATTGATGATAACAG GAAAGTTTAG
Protein sequence (LotjaGi2g1v0253200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNAVNMCYLACGSFVACFLEGYCWTRTGERQAARMRARYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEK VPNFLMNASMFIGSYIAAFALLWRLAIVGFPFIVLLVIPGLMYGRTLMSLARKISIEYNHAGTIAEQAISSIRTVYSFAG ESKTINAFSDALQGSVKLGLKQGLAKGLAVGSNGLVFAIWSFLSYYGSRMVMYHGAKGGTVFVVGASIALGGLSLGSGLS NVKYFSEAKTAAERIMEVINRVPKIDSDNMAGEILENVSGEVEFDHVEFVYPSRPESVILNDMCLKVPAGKTVALVGGSG SGKSTVISLLQRFYDPVGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAH NFISQLPLGYDTQVAINLNMHVIDDNRKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 247 | 247 | 38.051 | ||
| Phobius | 1 | 83 | 83 | - | – | |
| CDD | 2 | 255 | 254 | 1.74821E-79 | – | |
| Gene3D | 4 | 274 | 271 | 1.2E-160 | ||
| SUPERFAMILY | 5 | 266 | 262 | 5.23E-44 | ||
| PANTHER | 6 | 415 | 410 | 7.1E-239 | – | |
| PANTHER | 6 | 415 | 410 | 7.1E-239 | ||
| Pfam | 7 | 224 | 218 | 1.8E-42 | ||
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 84 | 103 | 20 | - | – | |
| Phobius | 104 | 108 | 5 | - | – | |
| TMHMM | 107 | 124 | 18 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| Phobius | 129 | 186 | 58 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 187 | 207 | 21 | - | – | |
| Phobius | 208 | 218 | 11 | - | – | |
| Phobius | 219 | 239 | 21 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 240 | 429 | 190 | - | – | |
| SUPERFAMILY | 275 | 415 | 141 | 2.53E-42 | ||
| Gene3D | 275 | 415 | 141 | 1.2E-160 | – | |
| Pfam | 300 | 410 | 111 | 1.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0253200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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