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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256800 |
| Transcript ID | LotjaGi2g1v0256800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72298284..72304237) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTGCCGATCTCTGTCTTACCCTATCTGACAGCAAGGGAAACACACATTCTCACTTAATCTGCATTCTGTTGCTAAAA CCACCCTTCTAATAACAATAGAATGAAAAACCTCTCACAAACACTCTTTGCGACACACACTTGATGTAAATGTAATTGGT TTATTTAAACCTGGGCTGGGCTAAAAGATTAAACAAGCCCGGCCCACTGAGTGTCTCAAAGAGTTATATTTCCGTGGCGC CATATTGCGTCTTTCCTTTCTCTCTCTATATACAGAGAAGAGACTGTGGTCTGTGGCGGTAACTTCGCTTTTCTCTGTGT ACCTTCACACACCTCAATCTGCTTCATCTCACTCGCCACCATGACAGACGGTGGTCACCTCTTCAACAACATCACCCTCG GCGGCCGCGGCGGCACGGTCAGTTCTTCCTCTCTCTCTCTCTCTCTCTCACCCTCAATTGGTTCCGTTTTCCTTCCCTTT CGTCGAAACTGTTAATCTCGCTCCAAACCCTAATTTTTCATCTCGCTTCAACTAACATTTCTTTGACCTAATAGCTCTTG ATTTCACTTTACCTGAAAATTTCGCTATCTTGCATTTTTTATTTTTTATTTAATTCCATGTGAAAATGTCAATCAGTGAA AACCCTAATGTGTGTACTTTGTTAGCCATGACTGAAAAATGAGGCCAAGTTTACCTATTTCATTGTTATTTTTGACAAAA AATAGGAAAGAAATGATTTTTGTTTCTAGTGAAATTGTGGGTATGTGGCTGAAACTGGAAGTTATGTATGACAGTTTTTT TCATGGGTTTGCAGAATCCAGGGCAGATAAAAATATTCTCTGGAGGAATTGCATGGAAAAGACAGGGGGGTGGTAAATCA ATTGAGATTGATAAAGCTGATATAATGGGGGTCACATGGATGAAAGTTCCAAGGACTAATCAGCTTGGTGTTCAGATCAA AGATGGGCTGTACTACAAATTTACTGGATTCCGTGATCAGGTTAATCTGTGCCTCTATGGAATGTGCATTTACATATATA TATTTAATGTAGAAAAATGGATTTTGAACTTATGGTCTGGTCTCTAATTTTTGTTCCTTTTGGAGTCAATCGCGGATCGT GGCCTGTCGGATGACCCCCAAAAATGAAATCCCACACAAGGGAAGGCCGTTATTGGCCGCGAATAGCGAGATTTCGCAGC CGCGATAGGCTACGCTACGCGACGGCACTATCGCGCGCTATTGATAACTATGATTAACAGTTTGACAGATCTTAATATTG ATTAGTTATACTTGGATTGCTAATCAAAAGCTGTTTCATATGTTGATATTTTTATACATATTTTGCAGGATGTTGTAAGC TTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTGTAGATGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGA AGTTGATCTAAATGGTTGTTGATATTTCCATGAAATCACTTTTGTCTTGCAACTAATATTATCTGCATGATGCATTTGCA TATATCAGACATCTCTCTTTGTAATCCTTACTTGCTATACTTCTAAAAATAGTGTTTGGGGAAAAGTAGTTTGACATCAC TTTCTGTTTGACATTGCACCATCGTGAGGACATGGTATGTAAGCAAGGGGAAGCGGTTTCTTATTTTCAAAGGAACTGAG TTGATATCATTCAGTTTGTTTTTTTGACATACAGTATATATTCTTGTATAGTGCAGGATGGATTCAAATTTCAATATGTG AGATCTTATGTGCTGTTACTTCTCTTTTAACCATTTCAAAAGTTGGTTCTTTTCTTTTTGTTGTACTCTAGGTCTCCAAT AAATCTAACCACCAATGCCTCCAATTTTATATTTACATGATGTACAAAAGTGAAAAAAATTGAGATAGGAAAGCATGAAA AAGTTAAGATAGGAAAGTGTTTTTCCTTTGGGGGAGGGGGGAGGGGACTGGGAGCTGCTTCTCAAACCGGAATTTCATCT CATTCTTGTTTTGTTTTTTCCTTTTGCCAATCAAATGCAGTCTTTCTCTTCGTGGTGAAGCTTCTTTGATGGAATTGACC TGACTTCTTCTGTGCAGTCATACTACCACTGTATGTACTTATGCTTCTAGTTACATTTCAGGAAATATGCTGGCATTCAT GGTTGGTTCAAAGCAATCTTTCGAGGTGTCTTTAGCTGATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGT TGGAGTTCCATGTGGATGACACAACTGGAGCTAATGAGGTATATCTGTATATACGTGCACATAAATTCTTTGATGTTTTA ATGAAATTTCATATAGAACAACCTGCTTTCTCATCCAAGCTTTGGCTTGAACAACATGCTGCTGTTCATAGTTTTTATAT GGGTTTGCATTTTTTATGGTCTAATATTGTTCATGTTATGATGTCAGAAAGATTCATTGATGGAGTTAAGTTTCCATATA CCAAATTCCAATACCCAGTATGTTGGCGATGAAAATCATACTCCTGCTCAGGTCAGTTTGCTCATGACTTTTATATATCG CGCGATATAGTAACTTCTAGGCAACTGACATTTGCCCACTCTTTTTTTGTATCAGGTTTTCCGTGATAAAATAATGTCTA TGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGTTACATTTGATGGTATTGCAGTCCTTACACCAAGGTGATCCTCT TTCAAATTATATTGTATACTGATGCTTGCATTTATGTCCTTTCATGAAAAAGGATTAATCCCTATTAATGCAAATTTGTA TTCTTGTGCAGAGGACGTTACAGTGTTGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAAT CCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGGTTTATTTCCTGATCATTTGTTTTCATATTAAGTGAACGA TAACGTAGTGCAATCAGCCAACCATGTCTCTTATACTTGATGCTTTTATCTTGACCTGTTAAGTACACTGACAACTTCGC ATCTCAACGTTTATCTGCAGTCCAATCAGCCACATACTTTTGTCATTGTTAGTCTTGATCCCCCTATTCGGAAAGGACAA ACTTTGTACCCTCATATTGTGATGCAGGTAATTGCTCACTGTTTTATGGTTCTCAATTTAGGTGATACATATTTTGCTTG CTTCTGAACCTAACATATTTTGCTCATTCCTGTATAGTTTGAAACTGATGTTGTTTTTCAAAGTGAATTGGCAATAAACG AAGATCTTTATAACACTAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGTATTGCTTAAACTGTTGATAATTGCTTTA CTGATATAGAACCCCTGAGATACTGCTTCGCAAAGGCTGCTTGTGTAAATAAAGAGCATAGTGATGCCATTATTGATACA TATCATTCACAATTCAATAATCAGGGGCTAATCCATGAAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGT TACCAAGCCTGGAAAATTTAGGAGTTGTCTAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGT ATCCCCTTGAGAAGAGCTTCTTTTTCCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGGTAAAATCCATTTATTTT TTACTGATGGTCAGATATCTGCTAGCCACTCTTTGACATACGTTTTATACATTGGAGGTTTTGATTTTTTTCATCATCTC CTACTAGGTTGACTATGTAGAATTTGAGCGACATGCTGCCGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGAT TAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCATAATTTGTATAGTTTTATCAGGTATACT AGCTCATTGTCAAATTTTACTTTGTTACAATTAATTGTTTGTTTTAATCCTAAACAATTTATTTTTGTTCTGCGCATACA GGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAAGTTCTTGAGAATGATGAT GATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGTACCCAAATC TGTATTTGATTTTATTCTTTAGCTCAAGGGTAACAGTTAGCAAATTAGTATTCTTTTTTCAGTAATCGAGGGGACGACAT TTATTTATATATCCAACCGCTTCTTTAAATATTTGGGCATGAGAAAACCTAAGTGAGCTTGGAATTCTGCTTACATTACT ATTTTCCTATTCTGAAGCTTGCATTTTCGGTGCTGAACTTTCTCCTGTTAATTAATCTATCCTTTTTAGTTTCTTGTATT GTTTGTTTTGCTCACTATGTGTTTGTGTGCATTTGCTCTGTCATCTGTTAATGTGAGCATGTCTCTTCAGTCCGCATGCA AGTTGCTCTACTTTCCCCTTTTTTCTTTTGGGGCACCCAATGTCTGGAACTTTGAAGAGTCTTTTTGCTTCTATGTTATT AATCAGTGGCAAATGTCAACAGGATGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGG GGGATGATTCTGATGGTAGTGATAGTGGTGATGAGAAAGAGGCAAGTGGTTTGTTTTTATTTGCCTTCATTACCTTGTGA TACCTCTCTTTCTACTCTTTAAGTCTTTGGTGTTCCAGCCTTACACCTAATAGCGGTCTATTTTCAGAAGCCTGCCAAAA AGGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAGAAGAAGCCAAGAGATGCTGATGAAGATGGAAAGAAG AAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCGCAAATGGAAAG AGAGGTGTGTTCTACTGGAAATGATCGATTTTTCAATTAGAATTTATTTCTCATTACTTCTTATCTCCTAATATTTTTTT TCAATGACAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTTGGGAGAGTACTTGGAGAGAAATGGAAAA AGATGTCAAGTATGGCTTGTTTCATGTTGTTTCATTTCATGCAATTCCACTGACTATTATGTTCTATGACTAAGTTTTTG TGTGTTGAATGCGCAGCGGAGGAGAAAGAACCATATGAGGTAAAAGCCCGTGCCGATAAGAAACGGTATATGGATGAGAT TAGTGGCTACAAGAATCCACAACCGATGAATGTTGATTCAGGAAATGAATCTGACAGTCCCTAAGGTTTTTGCTCTGATA TTGAAAGTTTGTTAGCTTGCCCTTTGTTGGCTACGCTTAGGTGCTTAGTAAGTATTGTTAGATATTTGTACTAGTAACCA GATCTGCTAATGTTGTTCTAATTAACAAGTTTGTGGCCGACTGAAACAGATCAACAAAATTTATCGTTTTTTGCACCAAC AGAATTTCATATGAAGAATGCTAAGTCCCAAATGATTTCACATTGTGTTAGCTATCTTTTTTTTAAGTGGTTCAGTGTTA TTTCACTATTATCTGTTATTAGGCCAAACACATGCTATGTACGTGCTTGTGGGAAGATAAACAATTTGAATTAGACCGGT CTGTTATTACATATAATGAAATTGAATAGTAAATTCTAAGATTATATGTAGGGCGTTGCTTCGGTACCCATCGGAAATGG GAGAGTATGAAATCCATTAGTTCAGTTTTTAGCATACAGAGGACTTGGGTTGTAAATTTTACAAAAATTATGAGAAAACA TGATAAATTAAAGTGGAAGGTCTGAAGTAACTTGTATATAAACAAATAGCTACAATAAAATAAATAACTACTATTGTAAG TACATTGAAATTTCTTTTATATTTTTAATAACTC
CDS sequence (LotjaGi2g1v0256800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGACGGTGGTCACCTCTTCAACAACATCACCCTCGGCGGCCGCGGCGGCACGAATCCAGGGCAGATAAAAATATT CTCTGGAGGAATTGCATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGATTGATAAAGCTGATATAATGGGGGTCACAT GGATGAAAGTTCCAAGGACTAATCAGCTTGGTGTTCAGATCAAAGATGGGCTGTACTACAAATTTACTGGATTCCGTGAT CAGGATGTTGTAAGCTTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTGTAGATGAGAAGCAGCTTTCTGTTAGTGG GCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCATTCATGGTTGGTTCAAAGCAATCTTTCGAGGTGTCTT TAGCTGATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCCATGTGGATGACACAACTGGAGCT AATGAGAAAGATTCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAGTATGTTGGCGATGAAAATCATAC TCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGTTACATTTG ATGGTATTGCAGTCCTTACACCAAGAGGACGTTACAGTGTTGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCT AATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCCAATCAGCCACATACTTTTGTCAT TGTTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATGTTGTTT TTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGGGCTA ATCCATGAAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCT AGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTTTTCCTAC CTAAACCTCCCACTCTTATTCTTCATGAAGAGGTTGACTATGTAGAATTTGAGCGACATGCTGCCGGTGGTTCAAATATG CATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCATAA TTTGTATAGTTTTATCAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAAG TTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGAT GAGGAGGATGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGGGGGATGATTCTGATGG TAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTA AGAAGAAGCCAAGAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGG GCAATGTCTGGTTTCATGTTCTTTTCGCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGA TGTTGGGAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAACGGAGGAGAAAGAACCATATGAGGTAAAAGCCCGTGCCG ATAAGAAACGGTATATGGATGAGATTAGTGGCTACAAGAATCCACAACCGATGAATGTTGATTCAGGAAATGAATCTGAC AGTCCCTAA
Protein sequence (LotjaGi2g1v0256800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDGGHLFNNITLGGRGGTNPGQIKIFSGGIAWKRQGGGKSIEIDKADIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRD QDVVSLTSFFQNNFGISVDEKQLSVSGRNWGEVDLNGNMLAFMVGSKQSFEVSLADVSQTTLQGKNDVMLEFHVDDTTGA NEKDSLMELSFHIPNSNTQYVGDENHTPAQVFRDKIMSMADVGAGGEDSVVTFDGIAVLTPRGRYSVELHLSFLRLQGQA NDFKIQYSSVVRLFLLPKSNQPHTFVIVSLDPPIRKGQTLYPHIVMQFETDVVFQSELAINEDLYNTKYKDKLELSYKGL IHEVFTTILRGLSGAKVTKPGKFRSCLDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEVDYVEFERHAAGGSNM HYFDLLIRLKSEQEHLFRNIQRNEYHNLYSFIREKGLKIMNLGGAQPTVGMAQVLENDDDDAVDPHLERIKNEAGGDESD EEDEDFVLDKDDGGSPTDDSGGDDSDGSDSGDEKEKPAKKEPKKDLPSKASTSKKKPRDADEDGKKKKQKKKKDPNAPKR AMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRYMDEISGYKNPQPMNVDSGNESD SP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 640 | 637 | 0.0 | – | |
| Gene3D | 4 | 95 | 92 | 1.0E-14 | ||
| PANTHER | 4 | 640 | 637 | 0.0 | – | |
| Pfam | 8 | 99 | 92 | 3.1E-23 | ||
| Gene3D | 96 | 181 | 86 | 2.2E-21 | ||
| Pfam | 107 | 175 | 69 | 1.1E-24 | ||
| Gene3D | 200 | 339 | 140 | 1.3E-49 | – | |
| SUPERFAMILY | 207 | 441 | 235 | 4.67E-74 | – | |
| CDD | 208 | 341 | 134 | 1.22811E-65 | – | |
| PRINTS | 220 | 236 | 17 | 1.6E-68 | ||
| PRINTS | 242 | 258 | 17 | 1.6E-68 | ||
| PRINTS | 265 | 281 | 17 | 1.6E-68 | ||
| PRINTS | 330 | 343 | 14 | 1.6E-68 | ||
| Gene3D | 340 | 444 | 105 | 1.0E-34 | ||
| CDD | 343 | 442 | 100 | 5.659E-43 | – | |
| SMART | 349 | 442 | 94 | 3.2E-33 | ||
| Pfam | 351 | 440 | 90 | 1.7E-20 | ||
| PRINTS | 357 | 375 | 19 | 1.6E-68 | ||
| PRINTS | 375 | 392 | 18 | 1.6E-68 | ||
| PRINTS | 401 | 417 | 17 | 1.6E-68 | ||
| PRINTS | 417 | 435 | 19 | 1.6E-68 | ||
| MobiDBLite | 469 | 565 | 97 | - | – | |
| MobiDBLite | 507 | 549 | 43 | - | – | |
| Gene3D | 539 | 628 | 90 | 2.1E-29 | ||
| SUPERFAMILY | 545 | 627 | 83 | 3.67E-27 | ||
| SMART | 557 | 627 | 71 | 5.8E-29 | ||
| CDD | 558 | 623 | 66 | 4.00885E-28 | – | |
| ProSiteProfiles | 558 | 626 | 69 | 20.158 | ||
| Pfam | 558 | 626 | 69 | 3.2E-23 | ||
| MobiDBLite | 620 | 642 | 23 | - | – | |
| MobiDBLite | 628 | 642 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0256800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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