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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0304900 |
| Transcript ID | LotjaGi2g1v0304900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin family protein; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|I1KXS9|I1KXS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77822304..77827923) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCATCCATTATTACAAAACAGACGCGCTGAAAACATTCAACTTGGCGACAACGTTTCGCTGAGGAGCTTCATCATC ATTCACCATCACCAACACCTTCACCTTCACCTTCTTCTCCACCATGGAACTTTTCTGAAGCTTCGTTTTCACTCAATCAC TACAACACCATCCGTTGATTAATCCCGCTAGAATTTTCCCCCAAAAAAATTGAAAAAATTATTATTTTAATCTTAATCTC TGCTGGAAAGCCACCGATCTTGCGTTTTTCTTCAATTTGAGGGGGTTTTGGAACCTGGGTTTGGAGAAAGTTTTGTTTTT GGCTTCTGGGTATCTGAGTGTTTTCATTGAAGGAGAAGAAGATGAGTAACCAGAGGAAGAAGAGTTTTCAGATTGAGGCT TTCAAGAACCGGGTCGTCATGGATCCGAGGTACGCTGACAAGACATGGGACCTTCTGGAACATGCAATTCGTGAGATATA CAACCACAACGCTAGTGGTCTCAGCTTTGAAGAGCTTTACAGGTACCCTCTAATTCTCTGTCTCTCGTGATTTTTTATGT TGTTGCTTGTTGGAAAGCTTTGTCTGATGTTGTTCTGTTTGGTTTGGATAAGGCTGTGCAATTGTTTGACTTGATTTTGA AGATGTGTTGGTTTAGTTGTCATAGGATTTGGGGGTGTTTGGAATGTTCAAATTGGTTCCTAGACAAAGCTTGTTCTGTC ATTTTTGGGTTTTGCTGCTTGTTCCTTTATTTTCAGGGGTTATGGAATCAAGGGTATGCTCAAATTGGTTCCCATGTGGT TGGTATTGTTATGATTTTGGGGATTTCCTAGTATGATGTTTCCTGTCTTAATTGTTGGACCAACTTGTTACATATGTGTA CTGTATAGCTCGTGAGTGTCTTCATTTGTTTTGTATTCTTCACTCTTATGAACTTATGAGCTCTGCTGATTCATCCCCTT CCCTTCTTTTTCTTTGTTGTTAATTTTCATTGTATAATGCTTTGTGAGAATTAGCTGTTATAGTTGTTATACTGATCGAC GTATACGTAACATTATGGTTATTATGGATAGGTGGACTCATAAGGTATTTGATGATTGATAGTAGTATTTTAGAACTCAT CTTCATATTTGTTAGTGATACATATCTTGTCGACCTTTGATGTAATAAATTACCAGTTGCTTGCTTGCAAATATGTCTTT TGTACGAAGCTGGATTCAAATATGTCGTCCCCAATTCCTATCCCACCCTCTGTCCCTCTCAGTGTTTTAAACTGCGATTG CGGCTGCTGTGATGCATGTTGCAGCCATTGCGGCGTGAATTTATTTTTCATTCGCACTTATAGAAAAAATCAATAATTAA TGTTATAGCTTTCATTTATATAATATTGTATTGATTCTTTTGTATTACTCCTATTACCTCCCACGATGTCATCTTCCAAT TCTGCCTCAAAGCCCTAATTTCCTACTCTCACACGGCCAAAGACTTACATTTCATTTTCATATTTCCCTCTTTGACAAAC CCTCAATGACTTATCTTCACCGCTCAGCCTCACAAAGTGACAGAAGGCAGAATCCAGACTTGCAGAGTAGTCATAGTCAA GTGCTCGAGCCACTGACCACATGCCCCACACATCAGCGGCAGTGCAACTGCAACCTCTCCTCGCCCCTGGATGACTCAAT CTGAAGGAAAGAAAAAGAAATGTGGTTGATTCGATCGGAAGAACAGGATGGAAGAAACTAAGTGAGCCAATAGCAGAGAA TAAGAACTAGAGAGATGCAGAAGGCTTTCTTTTCTTCATTCTTAACGTCGATGCAACCACTGAAAATGCCATTGCACCCA TCAGAAGGCTGTTGCAGGCATTGGAACATCGCTGCGGCCTTAAAACCATTGCGTTGCTGTCGAAATGCTGTTCCGCAACG GCCGTTTTGTGTGATTTTTGTGCAAACCGCAATTTGCGGTTGCGGTGCCTTTGCGGCCGCATCAGCTGATGCGAACCGCA TTTTAGAACCCTGGGGAACGTTGGTTTTAACAATTCTGACATGCAAATTATATGGTGGTATCGTTGTTGAACAAGTTGAA AATTATATGGTGATTCCAATTGTAAGTGTAGTTTTGATATTAAAGATTTTTTTAACAAGTAGGTACAAATAAGGATAGGA CATAACAGTTAAAATAACCTTGGGGAACGTTGGTTTTAACAATTCTGACATGCAAATTATCATGTTATTTTTAAACAGAG AATTAGATAATAGCTGTGCAAGTGGTGGTTGGACGTTAATTGGAATCTGAGGCCCAGTTTCTTTTAAATCCTGTACACCT TGATTTATTAGTTTATACAGTCTGAAGTGAACTAGTGAATTAATTCTGGCACATAAGATGATCTTGTTATCCAATTTTTC GTATGCATATGCGCACATCAGAAAGATGTTGCATGCTAATCTTTTTCCTTTCTGCAGGGGACAATGGATTTCATGTTTCT AATATTTTTTTTCTTCATTGTTTTGTGGATGCAGGAATGCATACAATATGGTTCTTCACAAATGTGGTGAGAAACTATAC TCAGGGCTGGTTGCCACCATGACTGCTCATCTCAAAGAGATAGCTAGAGATGTTGAAGCCACTCAAGGAGGTTCCTTTCT GGAAGAAATGAACAGGAAATGGAATGACCATATTAAGGCATTACAAATGATTAGAGACATTCTGATGTACATGGATAGGA CTTACGTACCAGGCAACAAGAAGACCCCTGTTTATGAACTTGGCCTGAATCTCTGGAGAGACAATGTTGTCAATTCAGAC CAGATAAAGCCTCGATTGTTGAATACACTCTTGGAATTGGTTCACAGTGAACGCTCTGGTGAAGTTATTAATAGAGGACT TGTTAGAAATATTACAAAGATGCTAAAGGATTTGGGTTCTTTTGTTTATGTGAAAGAATTTGAGTTTCATTTTCTTCAAG TTTCAGCTGAGTTCTACATGCTAGAATCCCAGAAATTTATTGAGTGTTGTGATTGTGGGGATTATCTGAAGAAAGCTGAG AGGCGTCTAAATGAGGAAATGGATAGAGTGAGCCATTACTTGGATCCCATGACTGAAAAGAAGATTACTAATGTGATGGA GAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAAAATTCTGGGTTAATTAACATGCTTAGTGATGATA AATATGAAGATTTGGGTAGGATGTATAGCTTGTTCCGTCGTGTTGCTGATGGTCTCTTGAAAATACGTGAAGTGATGACT TCACACATCAGAGAGTCTGGTAAACAGCTTGTTACTGATCCAGAAAGGTTGAAGGACCCTGTTGAATTTGTGCAAAGGCT CTTAGATGAAAAAGATAAATATGACAAGATTATAAATTTGGCGTTTAATAATGACAAGTTATTCCAGAATGCTTTGAGTT CCTCATTTGAATACTTCATTAACTTGAATCCTCGTTCTCCGGAGTTCATTTCACTATTTGTTGATGATAAGCTTCGAAAA GGTCTGAAGGGGGTTAGTGAGGATGATATAGAGACTACTCTTGACAAGGTGATGATGCTATTCCGGTACTTGCAAGAAAA AGATGTGTTTGAGAAGTATTACAAACAGCATCTAGCAAAGCGGCTTTTGTCTGGAAAAACCGTTTCTGATGATGCAGAGA GAAGTCTCATAGTCAAGCTCAAGACAGAATGCGGTTATCAATTTACCTCTAAATTAGAGGGCATGTTTACTGACATGAGA ACCTCTGTAGACACAATGCAAGGCTTTTATGCCAGCCACCCTGAGTTAGGCGATGGCCCTACACTTACTGTGCAGGTTTT AACAACAGGGTCTTGGCCAACTCAATCTAGCTTGACATGTAACCTGCCAGCTGAAATGTCCGCACTTTGTGAGAAGTTTC GGTCATATTACCTCGGCACCCACACTGGCAGGAGATTGACCTGGCAAACTAACATGGGCACAGCAGACTTAAAAGCTACC TTTGGAAAAGGTCAAAGACATGAGCTAAATGTCTCCACCTACCAAATGTGTGTCCTCATGCTGTTCAACAATGCTGAGAG ACTAACCTACAAGGAAATTGAGCAAGCAACTGAGATTCCTGCTTCAGATCTGAAGAGGTGCCTGCAATCATTGGCTTTGG TTAAGGGAAGAAATGTTCTGAGGAAGGAGCCTATGAGCAAGGATGTTGGTGAGGATGATGCATTCTTTGTTAATGACAAG TTCAGTAGTAAACTGTACAAGGTGAAAATAGGAACTGTAGTTGCACAAAAGGAATCAGAACCTGAGAAACTGGAAACTCG ACAAAGAGTGGAGGAGGACAGGAAGCCGCAGATTGAGGCAGCGCTAGTGAGGATCATGAAGTCGAGAAAGCAACTTGATC ATAACAATCTCATAGCTGAAGTCACAAAGCAGTTGCAGTCACGATTCCTTGCAAATCCAACAGAGGTGAAGAAACGGATC GAGTCTCTCATTGAGCGGGAGTTTTTGGAGAGAGATGATGTTGACCGAAAACTGTACCGATATCTTGCCTAGAATTGGTA AGCTTTTGTTCATTTCAGTTAAGTTTCAGTGATACAAATATTGTCTTGTGAACTATGTGTGGAGAATGACCTTTTAGCAG ATTCTTTTTTTTGACGGAAAACCTTTTGGCAGATTCTTAATGTACACTGAATTGTTCCTTCAATTGTCGCGCTATCTTAT CTCTGTTATCAAATATCCGCCATGGTGGTTTTTTGGCTTTCCGCCATGGCCGATATCCCGCCATATGGCCATAATTTCCG CCATATTCTGTCATTATTTGTCATGTTTAGCGGTATTTTGGCTTTCCGTCATTGACCCGCTATCCGCAATTTACCACGTT GCCTTATCTTCTTGCTTACCAGTGTCATTACCTCGAGGACACTCCTTTCCGCTTGTTTAAGAGGTTAATGTGCGAAAGTT CTGATACAAGTTATCGTTATAAGGTTTGGTGCAGGTTATCGTGATAAGTTCTGATACAGGTTAATGTGTCACTAAAAAAC TCATTATATTGAAACAAAGCATGCCATGCTTCTACAATCTTGTTATATTTGATAGCTAGAATTAGTTAGAATTATTGTTT ACTGCCAGGTGCCTTCAGCTAGATGAGTCTACAATCTTGTTATATTTGTCACCATGGAAACTATTTGTGGCAAGTCATGT TATCACTTATCACCATGGAAGTTGATAAAATGAAACTCTGCCACTGCGATCCAGTGCCGTGCTCTTAGCTAGTAGCTACT ATTTTCAATAGCCAAAGGAACTACTGAAGCAGTGCACGATAGAGAACAGGCATGAGATATGTCCAACGAGGATTAAGTGC TCTAAATTGAGGATTGTGCTTTAGAAAATTAAGTGTAGAGATTCATTGATTCAAAAATGATAGATAAGAATATGATAATG TGCACATGGATTGGAGAAGTTAGAATTTATAACATTGAGTTTAACATGGGTCAGAAAAACATGATACATTGACTTTAACG TGGATACACATTGAGTTTAACGGGAATCCAAAAGGAATGCATGTTGTTTGGGTGTTAGAGTCAACATAAACATGATTTCA CGTATCTCAATGTGTTAATG
CDS sequence (LotjaGi2g1v0304900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAACCAGAGGAAGAAGAGTTTTCAGATTGAGGCTTTCAAGAACCGGGTCGTCATGGATCCGAGGTACGCTGACAA GACATGGGACCTTCTGGAACATGCAATTCGTGAGATATACAACCACAACGCTAGTGGTCTCAGCTTTGAAGAGCTTTACA GGAATGCATACAATATGGTTCTTCACAAATGTGGTGAGAAACTATACTCAGGGCTGGTTGCCACCATGACTGCTCATCTC AAAGAGATAGCTAGAGATGTTGAAGCCACTCAAGGAGGTTCCTTTCTGGAAGAAATGAACAGGAAATGGAATGACCATAT TAAGGCATTACAAATGATTAGAGACATTCTGATGTACATGGATAGGACTTACGTACCAGGCAACAAGAAGACCCCTGTTT ATGAACTTGGCCTGAATCTCTGGAGAGACAATGTTGTCAATTCAGACCAGATAAAGCCTCGATTGTTGAATACACTCTTG GAATTGGTTCACAGTGAACGCTCTGGTGAAGTTATTAATAGAGGACTTGTTAGAAATATTACAAAGATGCTAAAGGATTT GGGTTCTTTTGTTTATGTGAAAGAATTTGAGTTTCATTTTCTTCAAGTTTCAGCTGAGTTCTACATGCTAGAATCCCAGA AATTTATTGAGTGTTGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTCTAAATGAGGAAATGGATAGAGTGAGC CATTACTTGGATCCCATGACTGAAAAGAAGATTACTAATGTGATGGAGAAGGAGATGATTGAAAATCACATGCTTAGATT AATCCATATGGAAAATTCTGGGTTAATTAACATGCTTAGTGATGATAAATATGAAGATTTGGGTAGGATGTATAGCTTGT TCCGTCGTGTTGCTGATGGTCTCTTGAAAATACGTGAAGTGATGACTTCACACATCAGAGAGTCTGGTAAACAGCTTGTT ACTGATCCAGAAAGGTTGAAGGACCCTGTTGAATTTGTGCAAAGGCTCTTAGATGAAAAAGATAAATATGACAAGATTAT AAATTTGGCGTTTAATAATGACAAGTTATTCCAGAATGCTTTGAGTTCCTCATTTGAATACTTCATTAACTTGAATCCTC GTTCTCCGGAGTTCATTTCACTATTTGTTGATGATAAGCTTCGAAAAGGTCTGAAGGGGGTTAGTGAGGATGATATAGAG ACTACTCTTGACAAGGTGATGATGCTATTCCGGTACTTGCAAGAAAAAGATGTGTTTGAGAAGTATTACAAACAGCATCT AGCAAAGCGGCTTTTGTCTGGAAAAACCGTTTCTGATGATGCAGAGAGAAGTCTCATAGTCAAGCTCAAGACAGAATGCG GTTATCAATTTACCTCTAAATTAGAGGGCATGTTTACTGACATGAGAACCTCTGTAGACACAATGCAAGGCTTTTATGCC AGCCACCCTGAGTTAGGCGATGGCCCTACACTTACTGTGCAGGTTTTAACAACAGGGTCTTGGCCAACTCAATCTAGCTT GACATGTAACCTGCCAGCTGAAATGTCCGCACTTTGTGAGAAGTTTCGGTCATATTACCTCGGCACCCACACTGGCAGGA GATTGACCTGGCAAACTAACATGGGCACAGCAGACTTAAAAGCTACCTTTGGAAAAGGTCAAAGACATGAGCTAAATGTC TCCACCTACCAAATGTGTGTCCTCATGCTGTTCAACAATGCTGAGAGACTAACCTACAAGGAAATTGAGCAAGCAACTGA GATTCCTGCTTCAGATCTGAAGAGGTGCCTGCAATCATTGGCTTTGGTTAAGGGAAGAAATGTTCTGAGGAAGGAGCCTA TGAGCAAGGATGTTGGTGAGGATGATGCATTCTTTGTTAATGACAAGTTCAGTAGTAAACTGTACAAGGTGAAAATAGGA ACTGTAGTTGCACAAAAGGAATCAGAACCTGAGAAACTGGAAACTCGACAAAGAGTGGAGGAGGACAGGAAGCCGCAGAT TGAGGCAGCGCTAGTGAGGATCATGAAGTCGAGAAAGCAACTTGATCATAACAATCTCATAGCTGAAGTCACAAAGCAGT TGCAGTCACGATTCCTTGCAAATCCAACAGAGGTGAAGAAACGGATCGAGTCTCTCATTGAGCGGGAGTTTTTGGAGAGA GATGATGTTGACCGAAAACTGTACCGATATCTTGCCTAG
Protein sequence (LotjaGi2g1v0304900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQRKKSFQIEAFKNRVVMDPRYADKTWDLLEHAIREIYNHNASGLSFEELYRNAYNMVLHKCGEKLYSGLVATMTAHL KEIARDVEATQGGSFLEEMNRKWNDHIKALQMIRDILMYMDRTYVPGNKKTPVYELGLNLWRDNVVNSDQIKPRLLNTLL ELVHSERSGEVINRGLVRNITKMLKDLGSFVYVKEFEFHFLQVSAEFYMLESQKFIECCDCGDYLKKAERRLNEEMDRVS HYLDPMTEKKITNVMEKEMIENHMLRLIHMENSGLINMLSDDKYEDLGRMYSLFRRVADGLLKIREVMTSHIRESGKQLV TDPERLKDPVEFVQRLLDEKDKYDKIINLAFNNDKLFQNALSSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEDDIE TTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMRTSVDTMQGFYA SHPELGDGPTLTVQVLTTGSWPTQSSLTCNLPAEMSALCEKFRSYYLGTHTGRRLTWQTNMGTADLKATFGKGQRHELNV STYQMCVLMLFNNAERLTYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPMSKDVGEDDAFFVNDKFSSKLYKVKIG TVVAQKESEPEKLETRQRVEEDRKPQIEAALVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIEREFLER DDVDRKLYRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 732 | 727 | 0.0 | – | |
| PANTHER | 6 | 732 | 727 | 0.0 | – | |
| Gene3D | 15 | 144 | 130 | 1.0E-43 | – | |
| SUPERFAMILY | 22 | 372 | 351 | 3.66E-114 | ||
| Pfam | 29 | 630 | 602 | 4.0E-220 | ||
| Gene3D | 145 | 264 | 120 | 7.1E-38 | – | |
| Gene3D | 265 | 372 | 108 | 2.0E-34 | – | |
| SUPERFAMILY | 368 | 640 | 273 | 1.31E-97 | ||
| Gene3D | 373 | 485 | 113 | 2.1E-42 | – | |
| ProSiteProfiles | 374 | 601 | 228 | 56.539 | ||
| SMART | 404 | 550 | 147 | 2.7E-69 | ||
| Gene3D | 488 | 642 | 155 | 1.6E-52 | – | |
| Gene3D | 643 | 732 | 90 | 1.3E-32 | ||
| SUPERFAMILY | 643 | 732 | 90 | 7.33E-28 | ||
| SMART | 659 | 726 | 68 | 1.3E-34 | ||
| Pfam | 662 | 722 | 61 | 1.5E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi2g1v0304900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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