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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0304900 |
| Transcript ID | LotjaGi2g1v0304900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A1J7HV59|A0A1J7HV59_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77823372..77825396) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCTTCACAAATGTGGTGAGAAACTATACTCAGGGCTGGTTGCCACCATGACTGCTCATCTCAAAGAGATAGCTAG AGATGTTGAAGCCACTCAAGGAGGTTCCTTTCTGGAAGAAATGAACAGGAAATGGAATGACCATATTAAGGCATTACAAA TGATTAGAGACATTCTGATGTACATGGATAGGACTTACGTACCAGGCAACAAGAAGACCCCTGTTTATGAACTTGGCCTG AATCTCTGGAGAGACAATGTTGTCAATTCAGACCAGATAAAGCCTCGATTGTTGAATACACTCTTGGAATTGGTTCACAG TGAACGCTCTGGTGAAGTTATTAATAGAGGACTTGTTAGAAATATTACAAAGATGCTAAAGGATTTGGGTTCTTTTGTTT ATGTGAAAGAATTTGAGTTTCATTTTCTTCAAGTTTCAGCTGAGTTCTACATGCTAGAATCCCAGAAATTTATTGAGTGT TGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTCTAAATGAGGAAATGGATAGAGTGAGCCATTACTTGGATCC CATGACTGAAAAGAAGATTACTAATGTGATGGAGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAAA ATTCTGGGTTAATTAACATGCTTAGTGATGATAAATATGAAGATTTGGGTAGGATGTATAGCTTGTTCCGTCGTGTTGCT GATGGTCTCTTGAAAATACGTGAAGTGATGACTTCACACATCAGAGAGTCTGGTAAACAGCTTGTTACTGATCCAGAAAG GTTGAAGGACCCTGTTGAATTTGTGCAAAGGCTCTTAGATGAAAAAGATAAATATGACAAGATTATAAATTTGGCGTTTA ATAATGACAAGTTATTCCAGAATGCTTTGAGTTCCTCATTTGAATACTTCATTAACTTGAATCCTCGTTCTCCGGAGTTC ATTTCACTATTTGTTGATGATAAGCTTCGAAAAGGTCTGAAGGGGGTTAGTGAGGATGATATAGAGACTACTCTTGACAA GGTGATGATGCTATTCCGGTACTTGCAAGAAAAAGATGTGTTTGAGAAGTATTACAAACAGCATCTAGCAAAGCGGCTTT TGTCTGGAAAAACCGTTTCTGATGATGCAGAGAGAAGTCTCATAGTCAAGCTCAAGACAGAATGCGGTTATCAATTTACC TCTAAATTAGAGGGCATGTTTACTGACATGAGAACCTCTGTAGACACAATGCAAGGCTTTTATGCCAGCCACCCTGAGTT AGGCGATGGCCCTACACTTACTGTGCAGGTTTTAACAACAGGGTCTTGGCCAACTCAATCTAGCTTGACATGTAACCTGC CAGCTGAAATGTCCGCACTTTGTGAGAAGTTTCGGTCATATTACCTCGGCACCCACACTGGCAGGAGATTGACCTGGCAA ACTAACATGGGCACAGCAGACTTAAAAGCTACCTTTGGAAAAGGTCAAAGACATGAGCTAAATGTCTCCACCTACCAAAT GTGTGTCCTCATGCTGTTCAACAATGCTGAGAGACTAACCTACAAGGAAATTGAGCAAGCAACTGAGATTCCTGCTTCAG ATCTGAAGAGGTGCCTGCAATCATTGGCTTTGGTTAAGGGAAGAAATGTTCTGAGGAAGGAGCCTATGAGCAAGGATGTT GGTGAGGATGATGCATTCTTTGTTAATGACAAGTTCAGTAGTAAACTGTACAAGGTGAAAATAGGAACTGTAGTTGCACA AAAGGAATCAGAACCTGAGAAACTGGAAACTCGACAAAGAGTGGAGGAGGACAGGAAGCCGCAGATTGAGGCAGCGCTAG TGAGGATCATGAAGTCGAGAAAGCAACTTGATCATAACAATCTCATAGCTGAAGTCACAAAGCAGTTGCAGTCACGATTC CTTGCAAATCCAACAGAGGTGAAGAAACGGATCGAGTCTCTCATTGAGCGGGAGTTTTTGGAGAGAGATGATGTTGACCG AAAACTGTACCGATATCTTGCCTAG
CDS sequence (LotjaGi2g1v0304900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTTCACAAATGTGGTGAGAAACTATACTCAGGGCTGGTTGCCACCATGACTGCTCATCTCAAAGAGATAGCTAG AGATGTTGAAGCCACTCAAGGAGGTTCCTTTCTGGAAGAAATGAACAGGAAATGGAATGACCATATTAAGGCATTACAAA TGATTAGAGACATTCTGATGTACATGGATAGGACTTACGTACCAGGCAACAAGAAGACCCCTGTTTATGAACTTGGCCTG AATCTCTGGAGAGACAATGTTGTCAATTCAGACCAGATAAAGCCTCGATTGTTGAATACACTCTTGGAATTGGTTCACAG TGAACGCTCTGGTGAAGTTATTAATAGAGGACTTGTTAGAAATATTACAAAGATGCTAAAGGATTTGGGTTCTTTTGTTT ATGTGAAAGAATTTGAGTTTCATTTTCTTCAAGTTTCAGCTGAGTTCTACATGCTAGAATCCCAGAAATTTATTGAGTGT TGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTCTAAATGAGGAAATGGATAGAGTGAGCCATTACTTGGATCC CATGACTGAAAAGAAGATTACTAATGTGATGGAGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAAA ATTCTGGGTTAATTAACATGCTTAGTGATGATAAATATGAAGATTTGGGTAGGATGTATAGCTTGTTCCGTCGTGTTGCT GATGGTCTCTTGAAAATACGTGAAGTGATGACTTCACACATCAGAGAGTCTGGTAAACAGCTTGTTACTGATCCAGAAAG GTTGAAGGACCCTGTTGAATTTGTGCAAAGGCTCTTAGATGAAAAAGATAAATATGACAAGATTATAAATTTGGCGTTTA ATAATGACAAGTTATTCCAGAATGCTTTGAGTTCCTCATTTGAATACTTCATTAACTTGAATCCTCGTTCTCCGGAGTTC ATTTCACTATTTGTTGATGATAAGCTTCGAAAAGGTCTGAAGGGGGTTAGTGAGGATGATATAGAGACTACTCTTGACAA GGTGATGATGCTATTCCGGTACTTGCAAGAAAAAGATGTGTTTGAGAAGTATTACAAACAGCATCTAGCAAAGCGGCTTT TGTCTGGAAAAACCGTTTCTGATGATGCAGAGAGAAGTCTCATAGTCAAGCTCAAGACAGAATGCGGTTATCAATTTACC TCTAAATTAGAGGGCATGTTTACTGACATGAGAACCTCTGTAGACACAATGCAAGGCTTTTATGCCAGCCACCCTGAGTT AGGCGATGGCCCTACACTTACTGTGCAGGTTTTAACAACAGGGTCTTGGCCAACTCAATCTAGCTTGACATGTAACCTGC CAGCTGAAATGTCCGCACTTTGTGAGAAGTTTCGGTCATATTACCTCGGCACCCACACTGGCAGGAGATTGACCTGGCAA ACTAACATGGGCACAGCAGACTTAAAAGCTACCTTTGGAAAAGGTCAAAGACATGAGCTAAATGTCTCCACCTACCAAAT GTGTGTCCTCATGCTGTTCAACAATGCTGAGAGACTAACCTACAAGGAAATTGAGCAAGCAACTGAGATTCCTGCTTCAG ATCTGAAGAGGTGCCTGCAATCATTGGCTTTGGTTAAGGGAAGAAATGTTCTGAGGAAGGAGCCTATGAGCAAGGATGTT GGTGAGGATGATGCATTCTTTGTTAATGACAAGTTCAGTAGTAAACTGTACAAGGTGAAAATAGGAACTGTAGTTGCACA AAAGGAATCAGAACCTGAGAAACTGGAAACTCGACAAAGAGTGGAGGAGGACAGGAAGCCGCAGATTGAGGCAGCGCTAG TGAGGATCATGAAGTCGAGAAAGCAACTTGATCATAACAATCTCATAGCTGAAGTCACAAAGCAGTTGCAGTCACGATTC CTTGCAAATCCAACAGAGGTGAAGAAACGGATCGAGTCTCTCATTGAGCGGGAGTTTTTGGAGAGAGATGATGTTGACCG AAAACTGTACCGATATCTTGCCTAG
Protein sequence (LotjaGi2g1v0304900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLHKCGEKLYSGLVATMTAHLKEIARDVEATQGGSFLEEMNRKWNDHIKALQMIRDILMYMDRTYVPGNKKTPVYELGL NLWRDNVVNSDQIKPRLLNTLLELVHSERSGEVINRGLVRNITKMLKDLGSFVYVKEFEFHFLQVSAEFYMLESQKFIEC CDCGDYLKKAERRLNEEMDRVSHYLDPMTEKKITNVMEKEMIENHMLRLIHMENSGLINMLSDDKYEDLGRMYSLFRRVA DGLLKIREVMTSHIRESGKQLVTDPERLKDPVEFVQRLLDEKDKYDKIINLAFNNDKLFQNALSSSFEYFINLNPRSPEF ISLFVDDKLRKGLKGVSEDDIETTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFT SKLEGMFTDMRTSVDTMQGFYASHPELGDGPTLTVQVLTTGSWPTQSSLTCNLPAEMSALCEKFRSYYLGTHTGRRLTWQ TNMGTADLKATFGKGQRHELNVSTYQMCVLMLFNNAERLTYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPMSKDV GEDDAFFVNDKFSSKLYKVKIGTVVAQKESEPEKLETRQRVEEDRKPQIEAALVRIMKSRKQLDHNNLIAEVTKQLQSRF LANPTEVKKRIESLIEREFLERDDVDRKLYRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 314 | 314 | 3.14E-98 | ||
| PANTHER | 1 | 674 | 674 | 0.0 | – | |
| Gene3D | 1 | 86 | 86 | 6.9E-25 | – | |
| Pfam | 1 | 572 | 572 | 2.5E-206 | ||
| PANTHER | 1 | 674 | 674 | 0.0 | – | |
| Gene3D | 87 | 206 | 120 | 6.2E-38 | – | |
| Gene3D | 207 | 314 | 108 | 1.8E-34 | – | |
| SUPERFAMILY | 310 | 582 | 273 | 1.12E-97 | ||
| Gene3D | 315 | 427 | 113 | 1.8E-42 | – | |
| ProSiteProfiles | 316 | 543 | 228 | 56.539 | ||
| SMART | 346 | 492 | 147 | 2.7E-69 | ||
| Gene3D | 430 | 584 | 155 | 1.4E-52 | – | |
| Gene3D | 585 | 674 | 90 | 1.1E-32 | ||
| SUPERFAMILY | 585 | 674 | 90 | 3.75E-27 | ||
| SMART | 601 | 668 | 68 | 1.3E-34 | ||
| Pfam | 604 | 664 | 61 | 1.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi2g1v0304900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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