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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0313600 |
| Transcript ID | LotjaGi2g1v0313600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Matrix metalloproteinase; TAIR: AT1G59970.1 Matrixin family protein; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|G7K5I7|G7K5I7_MEDTR Matrix metalloproteinase; Found in the gene: LotjaGi2g1v0313600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78858558..78861299) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGAAAATCATTTTTGTTTGGAAAGGCAACAAAAAAATTTCTATACCAACGGATCCGTTTTTTTGACAAAAAAAATAA CTGATCCATTTTTATATGTTTTGGAACTATCCATTTTCTTTTCTTTTTTTTTTTGGTCAATGGACAACGTTTACTAGAAA ACAAAGCCCAAATGGGTAGGGCAGGGTAGAACATGGAAAGTGGATCTTAAGACCACTGAAAGAAAAAGATTACAGGTTAA CAAAGAACCTAAACAACAATAGAATCCACATTCCTATTTCTACCCCATCTGCCCGTCACTAGGCCCAAAGGCTGAGGAAC CAAGGGGGAGGGGAGACGTTAGCCACCAGGATCGAACGGGATCGTGCCACTTCCGGTAGACGTGCTTCTCTGGTGAGACT CTCTTCTCAGGATCCTAGCGAGCTCCGGAGGCCAATTGCGAGTCCAATTGAGTGGAAGGGAGTGATGAAAGTGGAGCTGG GCAATGGTATGTGCGGCTTGATTTGCTTCCCTTGGGGTCCAAAGGAAGGTACATGAATGGAATTTAGTGGCCAGATTGAT TATATCATCAGTGATAACTTGGAGCTCTCCATTTGTTCTCGTCCGGTTACAGACCTCAATTAATTCCTTGCAATCCGATT CGAAAGTACAATTGCTCCAGCCAAAGTTGGATGATGTAATGATCGCTTCCCTTAAAGCCTCAGCTTCAGCAACAAGGGGG GAAGAAGCAAGTATCTCCGAGGCCCCCCCTATTAAGACCTGACCACGACAATCTCTAGCCAGATATGCAGTTGTAGCTCT TAGGTGATCTTTTTTCCAACCAGCATCGGTGTTAATCTTGAAGGACCCTTAGGAAGGGAGTTTCCATGTGGCTAAAGCTC TGTTCCTGGGCGATCACCAGTATCCCTGCTTGCTCCTCGAGACTGCGAGTCATCGATGATACAGTCTTCCCTGAGTATGA GAGCTCTTCCCTGAAGGGAGAGATGTAAGTAGGACAGTGATTGAAAAGTGGAAGGAGAATGGGGCCGCCAAAAAAGCCCA CTAGAACCCAGAAGCGATGTCTGCTGGGCCAATACCTTGGGCTTCCCCGGAGAAGGAAGTGAGGGGATCTCTCTAATCTG ATGATTTTAATTTTTGGTTAGTCTGCAAAAATATATATATACGTCAAAACCGCGTAGAGTGTATTTTATAGATGTAAATT GTTGAAGCTAAAATGATAGGTAACCTGTCGAACTCAATCATGAAATTTCCTCCGGATTGTACAGAACCTGCTTAGTAGAC GCAACTTGATGACTTTTCCAAAGCACAAAGTATGCGACTGTCTCCAATCCCTGAGTTCTATATTATAAGCTCTGTACTCA CATTTTCTCCAACACCAAACCAAGACACTTGATCACCCAAGAGAAACAAAATCAAGTACTAAAATATGAGGTTGAGAGCA CATAGAGGCAGCACCTTTTTGCTCCTTTTAGTATTAACCTTTCTCTTTGTGGATGTCTCTGAATCCATTTCTTTTGCACC CGCTATTGGATTACTAATTAGAAGCAGACAAATTCCGTCGTTACTTCGACGAGTAACTGCAACTAAATGGTTTTCCAAGA TCTTGAACAAGCTCAAGTCACTCTTCAATAGGCTGATAAAAATTGGAGACACCGTGGATGGTTTGTCGCAGGTGAAAGAC TTTTTAGACCTCTTCGGATATTTCAACTCCACTGTGCATCATTCAAACTTCACCGACGTGTTCACGGTTAATCTCCAATC CGCTATAGAGAAGTTCCAGAAGAATTTCAATCTCAAAGTCACCGGAGAGCTTGACAAGGAAGTGCACGAGATCATAACAC AGCCGCGGTGCAGCGTGGCCGACATCATAAACGGTACCACCACCATGAACTCCGGTGAGGCGAACACCACGTCGTTTAAG CCGTGGTGGAAAACCGGGGATAAAAACCTGACTTATGCTTTTAACCCTCAGAACAACGTCACTGACGGAGTTAGGTCGTT GTTTAGAGATGCCTTCGACAAGTGGTCGAAGGTGGTCACGACGTTGAACTTCACAGAGACGGCGTCGTTCAACGCCTCTG ACATCAAGATAGCATTTGTGAGGTTTGATGGAAAAGGAGGAATCGTAGGAGGTGCGTACACGAACTACAGTGTTCATGCT GGGGGCATATATCTGGATGCTGAAGAGGAATGGGTGCTTCCAAGTGACGAGCTAAGTGAAGATGGTGAAGTGGACCTTGA ATCGGTGGTGATGCACGAGATTGGTCATTTACTTGGGTTGGGGCATTCCTCTGTGGAAGAAGCTATCATGTACCCTGTCG TGTTACACGAGAAGAAGATAGACTTGGCCAACGATGACCTGAAGAGGATTCACCAAATAAATTATGAGGTCAAATGAAAG ATCGCTCCAATCGTATAATAATAGTTCAGGCTCTTCATGTTGAACGTACAAAGTTTACACTGACAGTGTATACCCATTAA ATTCTTAACCTATTCGGTTTTGATTTTATGATCATTAATCTCGTATTCAAATTATGAATTTGAATTGCATGTCAAAGTCA CGGTTATTCAATGGTGAGTGTCTAAATAGGAAAAAGAAAATATTTGTAAGATTTTGGAAAAAAAAATTAAAAAACGTATG ATGATAAAAATTGAAATTGTTTTCTTAAAAATTAAAATTTTTTTTTAAATGCTAAAAACATACTGTAAAATATAGTTTAG AAAAAATAAAAATAAAAATAAT
CDS sequence (LotjaGi2g1v0313600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTTGAGAGCACATAGAGGCAGCACCTTTTTGCTCCTTTTAGTATTAACCTTTCTCTTTGTGGATGTCTCTGAATC CATTTCTTTTGCACCCGCTATTGGATTACTAATTAGAAGCAGACAAATTCCGTCGTTACTTCGACGAGTAACTGCAACTA AATGGTTTTCCAAGATCTTGAACAAGCTCAAGTCACTCTTCAATAGGCTGATAAAAATTGGAGACACCGTGGATGGTTTG TCGCAGGTGAAAGACTTTTTAGACCTCTTCGGATATTTCAACTCCACTGTGCATCATTCAAACTTCACCGACGTGTTCAC GGTTAATCTCCAATCCGCTATAGAGAAGTTCCAGAAGAATTTCAATCTCAAAGTCACCGGAGAGCTTGACAAGGAAGTGC ACGAGATCATAACACAGCCGCGGTGCAGCGTGGCCGACATCATAAACGGTACCACCACCATGAACTCCGGTGAGGCGAAC ACCACGTCGTTTAAGCCGTGGTGGAAAACCGGGGATAAAAACCTGACTTATGCTTTTAACCCTCAGAACAACGTCACTGA CGGAGTTAGGTCGTTGTTTAGAGATGCCTTCGACAAGTGGTCGAAGGTGGTCACGACGTTGAACTTCACAGAGACGGCGT CGTTCAACGCCTCTGACATCAAGATAGCATTTGTGAGGTTTGATGGAAAAGGAGGAATCGTAGGAGGTGCGTACACGAAC TACAGTGTTCATGCTGGGGGCATATATCTGGATGCTGAAGAGGAATGGGTGCTTCCAAGTGACGAGCTAAGTGAAGATGG TGAAGTGGACCTTGAATCGGTGGTGATGCACGAGATTGGTCATTTACTTGGGTTGGGGCATTCCTCTGTGGAAGAAGCTA TCATGTACCCTGTCGTGTTACACGAGAAGAAGATAGACTTGGCCAACGATGACCTGAAGAGGATTCACCAAATAAATTAT GAGGTCAAATGA
Protein sequence (LotjaGi2g1v0313600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLRAHRGSTFLLLLVLTFLFVDVSESISFAPAIGLLIRSRQIPSLLRRVTATKWFSKILNKLKSLFNRLIKIGDTVDGL SQVKDFLDLFGYFNSTVHHSNFTDVFTVNLQSAIEKFQKNFNLKVTGELDKEVHEIITQPRCSVADIINGTTTMNSGEAN TTSFKPWWKTGDKNLTYAFNPQNNVTDGVRSLFRDAFDKWSKVVTTLNFTETASFNASDIKIAFVRFDGKGGIVGGAYTN YSVHAGGIYLDAEEEWVLPSDELSEDGEVDLESVVMHEIGHLLGLGHSSVEEAIMYPVVLHEKKIDLANDDLKRIHQINY EVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 4 | 321 | 318 | 9.1E-134 | – | |
| PANTHER | 4 | 321 | 318 | 9.1E-134 | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 323 | 296 | - | – | |
| SUPERFAMILY | 67 | 147 | 81 | 2.35E-15 | ||
| Gene3D | 72 | 323 | 252 | 2.3E-57 | ||
| Pfam | 81 | 136 | 56 | 5.5E-9 | ||
| PRINTS | 137 | 150 | 14 | 1.6E-12 | ||
| SUPERFAMILY | 139 | 301 | 163 | 1.96E-27 | – | |
| SMART | 164 | 322 | 159 | 3.5E-17 | ||
| Pfam | 171 | 318 | 148 | 3.0E-32 | ||
| PRINTS | 193 | 208 | 16 | 1.6E-12 | ||
| PRINTS | 274 | 299 | 26 | 1.6E-12 | ||
| PRINTS | 307 | 320 | 14 | 1.6E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
Expression pattern of LotjaGi2g1v0313600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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