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IPR021190

Description

IPR021190 is a Peptidase M10A.

<p>The MEROPS peptidase family M10, subfamily M10A, consists of extracellular metalloproteases, such as collagenase and stromelysin, that degrade the extracellular matrix and are known as matrixins or matrix metalloproteinases (MMPs). They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors(zymogens), which are proteolytically cleaved to yield the active enzyme [[cite:PUB00002514], [cite:PUB00001191]].</p> <p>All matrixins and related proteins possess two domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [[cite:PUB00002456], [cite:PUB00002651]]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [[cite:PUB00002514], [cite:PUB00001191]]. Although it was initially thought that the primary function of these enzymes is to degrade proteins of the extracellular matrix, MMPs have a much broader spectrum of activity that includes the proteolytic processing of cytokines, growth factors, growth factor receptors, and cell adhesion molecules [[cite:PUB00069037], [cite:PUB00069038]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| 21
Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| 23
PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502141260|ref|XP_004504503.1| 25
Matrix metalloproteinase-28 [Medicago truncatula] gi|357482059|ref|XP_003611315.1| 13
Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| 15
Matrix metalloproteinase-27 [Medicago truncatula] gi|357512801|ref|XP_003626689.1| 25
PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356501971|ref|XP_003519796.1| 10
Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| 25
PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356540528|ref|XP_003538740.1| 24
PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502154901|ref|XP_004509890.1| 25
Metalloendoproteinase 1; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|A0A151TFV0|A0A151TFV0_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi2g1v0313400 27
Matrix metalloproteinase; TAIR: AT1G59970.1 Matrixin family protein; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|G7K5I7|G7K5I7_MEDTR Matrix metalloproteinase; Found in the gene: LotjaGi2g1v0313600 22
Metalloendoproteinase 1; TAIR: AT4G16640.1 Matrixin family protein; Swiss-Prot: sp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP; TrEMBL-Plants: tr|I1LGQ7|I1LGQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0422500 25
Metalloendoproteinase 1; TAIR: AT2G45040.1 Matrixin family protein; Swiss-Prot: sp|Q8GWW6|4MMP_ARATH Metalloendoproteinase 4-MMP; TrEMBL-Plants: tr|A0A151RA26|A0A151RA26_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi3g1v0050100 26
Matrix metalloproteinase; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|V7C6E0|V7C6E0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142200 26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd04278 CDD 1 6.67