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Matrixin signature
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| | 21 | ||
| – | Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| | 23 | ||
| – | PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502141260|ref|XP_004504503.1| | 25 | ||
| – | Matrix metalloproteinase-28 [Medicago truncatula] gi|357482059|ref|XP_003611315.1| | 13 | ||
| – | Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| | 15 | ||
| – | Matrix metalloproteinase-27 [Medicago truncatula] gi|357512801|ref|XP_003626689.1| | 25 | ||
| – | PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356501971|ref|XP_003519796.1| | 10 | ||
| – | Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1| | 25 | ||
| – | PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356540528|ref|XP_003538740.1| | 24 | ||
| – | PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502154901|ref|XP_004509890.1| | 25 | ||
| – | Metalloendoproteinase 1; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|A0A151TFV0|A0A151TFV0_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi2g1v0313400 | 27 | ||
| – | Matrix metalloproteinase; TAIR: AT1G59970.1 Matrixin family protein; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|G7K5I7|G7K5I7_MEDTR Matrix metalloproteinase; Found in the gene: LotjaGi2g1v0313600 | 22 | ||
| – | Metalloendoproteinase 1; TAIR: AT4G16640.1 Matrixin family protein; Swiss-Prot: sp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP; TrEMBL-Plants: tr|I1LGQ7|I1LGQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0422500 | 25 | ||
| – | Metalloendoproteinase 1; TAIR: AT2G45040.1 Matrixin family protein; Swiss-Prot: sp|Q8GWW6|4MMP_ARATH Metalloendoproteinase 4-MMP; TrEMBL-Plants: tr|A0A151RA26|A0A151RA26_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi3g1v0050100 | 26 | ||
| – | Matrix metalloproteinase; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|V7C6E0|V7C6E0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142200 | 26 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd04278 | CDD | 1 | 6.67 |