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PF00413

Source: Pfam

Description

Matrixin

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004222
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0031012
Cellular component Extracellular matrix A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
Subterm of

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Lj0g3v0119119.1
– Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1|
Domains
21
Lj0g3v0119179.1
– Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1|
Domains
23
Lj0g3v0194779.1
– PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502141260|ref|XP_004504503.1|
Domains
25
Lj0g3v0195809.1
– Matrix metalloproteinase-28 [Medicago truncatula] gi|357482059|ref|XP_003611315.1|
Domains
13
Lj0g3v0246819.1
– Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1|
Domains
15
Lj0g3v0342509.1
– Matrix metalloproteinase-27 [Medicago truncatula] gi|357512801|ref|XP_003626689.1|
Domains
25
Lj2g3v1366100.1
– PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356501971|ref|XP_003519796.1|
Domains
10
Lj2g3v1367130.1
– Matrix metalloprotease [Medicago truncatula] gi|357486209|ref|XP_003613392.1|
Domains
25
Lj2g3v2001600.1
– PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356540528|ref|XP_003538740.1|
Domains
24
Lj3g3v0966710.1
– PREDICTED: metalloendoproteinase 1-like [Cicer arietinum] gi|502154901|ref|XP_004509890.1|
Domains
25
LotjaGi2g1v0313400.1
– Metalloendoproteinase 1; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|A0A151TFV0|A0A151TFV0_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi2g1v0313400
Domains
27
LotjaGi2g1v0313500_LC.1
– Matrix metalloproteinase; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|V7CH34|V7CH34_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0313500_LC
Domains
9
LotjaGi2g1v0313600.1
– Matrix metalloproteinase; TAIR: AT1G59970.1 Matrixin family protein; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|G7K5I7|G7K5I7_MEDTR Matrix metalloproteinase; Found in the gene: LotjaGi2g1v0313600
Domains
22
LotjaGi2g1v0422500.1
– Metalloendoproteinase 1; TAIR: AT4G16640.1 Matrixin family protein; Swiss-Prot: sp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP; TrEMBL-Plants: tr|I1LGQ7|I1LGQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0422500
Domains
25
LotjaGi3g1v0050100.1
– Metalloendoproteinase 1; TAIR: AT2G45040.1 Matrixin family protein; Swiss-Prot: sp|Q8GWW6|4MMP_ARATH Metalloendoproteinase 4-MMP; TrEMBL-Plants: tr|A0A151RA26|A0A151RA26_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi3g1v0050100
Domains
26
LotjaGi3g1v0142200.1
– Matrix metalloproteinase; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|V7C6E0|V7C6E0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142200
Domains
26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd04278 CDD 1 6.25