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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0322900 |
| Transcript ID | LotjaGi2g1v0322900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|R9R650|R9R650_9FABA Knotted-1 homeobox protein; Found in the gene: LotjaGi2g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79803177..79810759) extracted from Lotus japonicus Gifu genome v1.2.
GATGAGAGAAAGTGGTGAGGTCTAGTTAGTGACTCTAGTCTCTAGTACGTAGAACAAGTTGGCCCTAGACAACCCAAACC ATGTTTACACTTTACATAATTTGGCAGGTGTCGTAAACCCTCACGCACCTTATTTTTTATATAATAATTCATATTCATAT ACATGGTTTTTCCTGGGAGCAATACTAGTAGTATACATCATTACTGTGGTAATAAGTCCATCGTGATCGTTCTAGACTTC TAGCTCTTGCTTCAAAGTTCAAACCCAAAGTTCAAACTTAGTTCTCATTTTTTCTATTATTATATAAATAAAGTTAAGCT TGAGCAAATCTTCATGAAACTATAGATAATTTTCACCATTATCGTCATCTTCTTCACTCATATATACCGTAACTGTAGAG GGAAACGAGATTATGCGAGTGAGTTCCGCGAGTTGTTCCTTTTTCTTCAATAAAATAAATTAAATAATACAAAAAGTTGA GGAATTCAGAATTCTTCATTTACTTCTTCTACTATTTCTACTGCGCTCCGCCTCCTTATCCTATTAAAGTGTGAAGCAGA ACGGTTATGGACGAAATGTACGGAGTGCCATCCACGGCGGAGTACGCCGACAAGGCGCTGATGCCGCCGGAGAATCTGAT CTTCCCTGCAGACTACCACAGCTTCCTCATGTCCTCTTCCACAGCAGACCGGATTCCGATGTTCGGATCCGACGACTTCT TCTCGTCGGCTGAACCCTCCTCCGCCGGAAACCAGGACGACGTGGCTTCCACCGTGATGAAGGCGAAAATCGCCTCTCAC CCTCAGTACCCTCGCCTCCTCCAAGCCTACATCGAGTGCCAGAAGGTAAGAATTCGTTGAAACCGTAACCGTCGCTCCGT AACAGAAACGGTTATTATCACGCTAGCTTAACGAGTTGAATTCTGTTATAAAATGGCAGGTGGGTGCGCCTCCGGAAATC GCGCGTTTGTTAGAGGAAATCCGGCGAGAAAATGACCTGTGTAAGAGGGACGTAGTTTCCACGTGCTTTGGAGCCGATCC CGAACTCGACGAGTTCATGGTCCCCCCTTAATTTCCCTCTCTTTTTCATTTCCTTTCCTTCTTCTGTCTCTTTTGTGCGC GCACGAACACTGTCACATTTAATAAATCAATTTTTGTCTCCGATCAGGAAAGCTACTGTGATATGCTGGTGAAGTATAAA TCAGACCTGGCTAGGCCTTTTGACGAAGCGAGCAACTTCCTCAACAAGATTGAAATGCAGCTCAGCAATCTCTGTACTGG TGCTTCAGTTCCCACTCTTTCTGGTCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTCTTTTTGTTTAGTATATCTG ACTGCAACTTTTGCAGTCACTTACTGCTAGTGTTATTATAATTTTGGGACTCGATGTTCGTTGATATCTGTGCTAGCTAG CTGCTAATTACTACCTTCTCTTTGATCCATCTTCTTGGATTATTTTTGTTTGTTAACATTAATAATGATTAATCTAAGTT GCTAAGTGCTTTTTAATTATGAAAACACGAGACGTAGCTTTTGAAGTAAAACAAGGACCCGAAAATAGGGAAAGGAAAAC CCTAATACACAAAAAGGACATTTATCTCTTTCTCTTTGTCTTGACTGTGCCTGTGTACCACTGCTCGATCTCAGTCTCTG CGCGCAGTTAATGTGTGTGTAAGTGTGGTTTTTCTGAATGCTTTCGCTGTTTGACTTAATCTTATGCTTCTTTTGTTATG AGTGAAGATATAAAGTTTGAATTGCTTGGTCATTCAGGGGTTACCAGCGCTGTTTGCAACCTTTCGCCTTTATTTTGTTT CTACTTTGAAGTAGTAGTAATTACTAGCTTCTCTGGACTTGTTTGGTTTGTGCGGACTTTTTAGTGCATGTTTGGTTTTC AGTTGAACCCAAAGCCGACGGAAGTCTTGGGTTGTTTTCGTGTTTAGTGCCTCGTAATGCGAGTTCTTGAATTTCAATAA ACTGAATGTAGTTGTTGTGGTTTTCAACTGTTGTTGGCTTCCCAGTCCCACACTCTTCTTAACTCTTTTTTTTGTAATTT TCCTGGTTTTTTTCTTTTCTTCTTCCTGCCCTTGAATGTCAAGGTTTTGTATCTGCACATTATGAAACTGCAGTTGTTAC GTCTCGTCTCAAATAGTACACTCAGTTCAAGACAATGACCAAACAATGGATGATGATTTTTTTGATATGGGCCTTCTTAC TTCTCCCATCTGGCATCCAATTAAATTGTTTCTTGTATTCTTTTGGTATTTCCAGCTCATAGTGCATGCTGTCTCTGAAC AAGTTGCTGTTTAGAAAACTTTCACAGCAAATTCATTCAAACAATGTTTATGCCTGTGTTAATTAAGTGATGCATGACTC ATAGTTAGTGGCATTGTTTTCCTTTTTCTTTTCTTTGCAACTGTGAGGAAACAAATGCTGGTAGCGAATATTTTGAAAAT GATATCCTTGTTTAACAGTTTACTAGGTTTGAAACTTAAGAGCTATTTATAAAGTTTTTTTTTTGTTAGATTGTCTTGTG AGTATGCTGTATGCTAATCATCTTTCAAACTTAACATGTTTTAATCATTTATTTGAGGCTAGAGGAGTGCTGTAGTACTT CATTGCTTGATATATTGTTTGACAGCTGAAATGCTGTGGCATATTACATGTTCTTCAAATGATATGTGAACACATGTAGT TCATCCATGTGAATTAGTGCTTGGCATCAAAGGAAGGCTCCCAAAGTAATATCATATCTTTATCCCTTTTAAGTTGTGTT CAAGCTTCACTAATTAATATAGATGCACAAACTTTCTTCTTTTTTCTTGCATACACCAAATTAGAATGAATCATTTCAAG TTAAATTTTTGTGATGTAACAATTTTTCTTCTTTATCTTCCTAAATATTTTCAAAAAAACTTAATAGGATTTTCTTTTTA ATGTCTGTTATACTAATATTTCATATCAAACTTTAACATTAGAGGATCCTTTTTTCATGTAAATTAACACTAATGATCAA ATATAGTAACCTTCCGATTTACCTATTTCGGATTAGATGAACAAACTAACATGATCTGCCAGTAATGGCATGCAATGATT CTTCTTTGATACTTTATTGATGTATCGAGTTCCAATAGAGCACAAGTGTTGTTGCATGTTGTTTTGGTATATAAAAAATG TTCATTGGGAATAGTCTAAGGGGCTGATAGTCTGTCTGCAGCTAAAGTAATGTCAGAGTTTCTGGAATAATTAAATGGTA AGTGGCTTAGAAGAGTTAGCTCAAGATTATCAGTCAGATTATCCAGTTGGCTTCTTTCGAAAGTTGGTTTTTTGAACTTG AATAACTTTGAAGGTTAACTGCAGGTCTTGGTTGATTGTGATTGTTTAGTTCATTCCTACTTTAAACTAGGTCTTATTTT TCTGGTTGCCTACAAACAATGATTCATGGTTGGTTTTACTTGTATAATATTTTTCACTACATAGAAGTATAGAATTTTGA CATTCTGATATGCGTGGTGTGGTATATTCATTTGGTGGTTATCAAAAATTCATCATTACTTTTCTTGTCTTTCAATTTGG TTACTGAACTTTATTGATGCTAGAAGATTAGTTATAGTTTCCCTTGCCGATCTGCTAACTGTATAGAGGCTGGCACACAA TAGATTCTAATATATCAATTTTGACAGAATTTTTGATGTTGTCAAGCGTGGTCACTGATCAGGTTGGTAATAGTTGGCTA CTATTGTTTATGTTTGAAAGTACAGATTACCTTTTCAGTGGTGATGTTTTAATTTGAAAATGATTTAAAATTGCATCTTT TGATGGATTCTCCTTCATCATCCTAACCTTTGCCTCAAAAGCAAAGTTGATAGGATGTAAAATTCGTTGTTTCTAATTTC TTCTATCTTCTTTGATCTTGTTTTGATTTTTATTCTTCTTGTTCTTCTGCTGCAGCCACTACAGGCGCATAAAGGATCTT GTTTATTAGAATAAGGTTTTAAGGTGCTTCAAGAAAATTTTGTGACAATCTTTGGGTTTATAATATTGTTTTCCTCATGG AATTTCGAAATAATGGTTTTTCCAATTAATCATTGTTGACATTGATGCTGTCTTCAATTATGTCATTTCTAGAGCTTGTT AAACGGGTTAAATATCTTATTGAGAAAACTTTCTTGCATGTTCTAAGCGATCCGTTTGAGTAACAGTTGTACTTCTCTAT TGTTTTTAAACTAATCTCATCATTCTTTGGATTTTGGATATTCTTTCACTTGGAAACTTTTGTATAACATGTTTGATTTC TTGCGTTCTTTAGGCCTCTACATGTGCTGCACTCTGATTTATGTTTTGGGTGATACAATTGTTGGGATGTTAATTAATTG GTGACATGGAGTGTTTATTTTTTTATCAGCATTCAGCACACATTCCAAAGTAGTGTGAATGTGTTTTTGGTCGGTCCATA TCTTGTCTCATTGGAATGAATTTGCTATTGGCAACGTAAATACAAATACACACATAATCAGCTCAATTTGAAGTCTAAGT TATTTTACTATCTGACTAGACACGTAAAGTTAGATAAGAATAGAAGAGATAACTATATGATGTGATTGAAAGAGAGATAG AAAGAAAAAGTGGTGTTAGGATGTGTATGCACTTTATTTACTACCGTCTAGGCGTCTACCTATCATTACTCATTTCACAA GTAGTATGTTCCTGTACTGTTCAGTGTATACGTTAGGTAACATTAGGGTGGTATTTGGAGGAGTTTTCCTATTAGAGCTT ATTTGAATCTGTCCTATGATAAATGAATTGGAAACTATTTCATTAACCAGCCTATATATAAGCTATTTAGGCTCATTTGA GCCTATTGCAATGAACTTGTCACGTTAACTCATGAGTGCATATTGAAGAAACTCTTGCACAAGTTCTTATAAGCATTATT AAGTGCTCAATTAATCTATGCTGGGGACTAAAATATAAAATTTCAGTAAGCCTTGCCCTTATTGGTGGCATTGGCATAGG TTTCACCAAGTGCTATCTGGCATAGGAATGTAAAGATTTCGTTGACAAAACGATGCAATTATTAGTGGAGAAAACAAAAG TTATCGGATATCCAACATCATATGGACTTTTCAAATGTCATGGTTCCTTTCCCTAGCTTGCAATGCATGAGGGAGCATAA GAGCTTGAAGGATGTTTAATATAGGGGCTGGTGAATATCTATCTGGTTACAACCTTTCTAAAAATCCCGTGTAGAGCGGG GGTTATATTGATCTAATCCTCAAATCTTTCACATGCACTCCCGCAGTTCTCGCTGTTTTCTGCTGCAAAAGCTTTTTGTT TGAGAGAACGTTCATATATCTTCCCCACGCACTCTAGCGTGGCCTGTCTTAGTGCTCTTTTTCGATACTTTGTTCTCATA TGCCATTATGGGCTAATGTCATTGACCCATGGGTAATGGGATGATGCACGTAACACTTGTCAAACTCCAATTGCCTTTTC TTTTTGGTAAGACATGGCCCCTCTTTGTAAAGCAACCTGTCTTATTCTCTTGTGCCTGAATTAAAGCATGTACTTTCCCA CGAGGGTTGAAGTTTGGTTGGACATTTGTTGATGGGGTCGAGATTCGCTCTAATGCCACTACTACAAGGTTTTTGTGTCG CAAATTGCAGTTAAAATTGTTGCACGAGAACAACGTTTCTAAATTTCATTGATGTCTACGTGGTTAGTTTTGTCTAACGA TGGCTTATCATTTTTAAAGATCAATTTTTAGCAATGGAATTAGTTAAAGCTTATTTATATTAATTTCAAAATTAATTTTA AAAAGGTTTTCAAACATGCTCTAATCTTGAGTTCAATGTCACTCTGGTTTAGGTCATAGTAAGTGACAAAGGATGGAACT AGGCACTGACACTGATAATGCTTTCACATAACTGTCCAACCTAGGTCTGCTGTGTACAGTGTACTCTCATGCGAGGGTCA AATCCTTGTCGGACTGAGTGGTTGTCAGAGCAAATTCGTGGGTCCTCGTGGCTACTATGCTTGAACAATTTTGGCCTTTT AGTTATTAAATTTATTTATAACTTGCCTATTGTTGAGTTTTTTAATTTAAATTTGTGTAGACTAGTTCAAAAAAAAAATT GTGTTGACAGCTTTATAGTAAATTTGAACAAACAATTTTTTTTTTTTGACAGTAACAAACAATTTAATTTAGTGTTATTT ATAAGTTAATTTTAAAATTTGTTGAAATAAACGTAAGTTTTCTACAATTCCTTTGCGGGTTGTCTAAATGACCCTAAGAA AGTTTGATTAAATAACTTATCGTCTTATCACATTAAAGATAAGTAAGTTAAAATTTTTATATTTTATTTATTAATTTTTT TATTAAAAATCTTAATGGTCTATTGAGTTGTGGGTTAGTAACCCACATGAGTCATTTACCCAACCTCTTTATTTATTTGC AAGTTTTGTCAAGCAAGTGTCTTAAAGATAATAAGGAAAGAGAATTACACAATTTATATTTTTTATTTAATATTTTCTAT GTCTGTTCACTTGGTGGCTTGGTCCATGTTTTGAGGATTTTTTTTTTATCTTAATTGAATTCAATTCTAAGTTGCATTCT TTTAGTGATTTTTATTTTTATATTGCTATTATTATTTGGCTAGATGAGGGGGGTGTATCTTCAGACGAAGAATTCAGTAC TGGAGATGGTGATGCTCAAGATGGACAACAATTAAGGGGAGAAGATCGTGAGCTCAAGGATAGGCTTCTACGCAAGTTTG GGAGTCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCCAAGGAAGCAAGACAAACA CTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGTAAATACTTCATTGCATGCTTCTGTTTGTTTCAT TTTCATTCCCATACAAGCAATTACTGAACTTCACACAAGCTTTCAAATGAAAAACTTGTTTTTTTTTTTTTGATAATCTA GGAATCTGATAAGATTGAATTGGCTAAGGCAACGGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAA AACGACATTGGAAACCATCTGAGAACATGCAGTTTTCTATGATGGAACATCTGACCGGACGGTTCCTTTCTGATGAATGA GGTGCATATGTATATGCATGCATTCAAATGTATATTCTTAGTAACTGTTGCCTGTATTTTCTTTTGTAAATTATAAACTA GAAGCAGATTACTGACAGTAATATGCTTACATTTCCCACAAAGAGATCAAAAGGGAAATGATCATGTAATTTTCTTCCCT TGTATTCTTGATGAAAAACTGCTGACATTCTGAATGAATGCTTATAGTTTGGTCCTTGGTCTACCTCCATTGTAGCTTGT TGCTGTCGTTTGTCATTATGCATTCTTATCTTTTACCAACAGAACAGAACTAGCAAATTAACTAAGCAAGGAAGAAAGGA AATCAGACATAAACTTTGGTGAGCAAAATTGCCCAATTTCTGAGTATCGATTTCATATTTATC
CDS sequence (LotjaGi2g1v0322900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAAATGTACGGAGTGCCATCCACGGCGGAGTACGCCGACAAGGCGCTGATGCCGCCGGAGAATCTGATCTTCCC TGCAGACTACCACAGCTTCCTCATGTCCTCTTCCACAGCAGACCGGATTCCGATGTTCGGATCCGACGACTTCTTCTCGT CGGCTGAACCCTCCTCCGCCGGAAACCAGGACGACGTGGCTTCCACCGTGATGAAGGCGAAAATCGCCTCTCACCCTCAG TACCCTCGCCTCCTCCAAGCCTACATCGAGTGCCAGAAGGTGGGTGCGCCTCCGGAAATCGCGCGTTTGTTAGAGGAAAT CCGGCGAGAAAATGACCTGTGTAAGAGGGACGTAGTTTCCACGTGCTTTGGAGCCGATCCCGAACTCGACGAGTTCATGG AAAGCTACTGTGATATGCTGGTGAAGTATAAATCAGACCTGGCTAGGCCTTTTGACGAAGCGAGCAACTTCCTCAACAAG ATTGAAATGCAGCTCAGCAATCTCTGTACTGGTGCTTCAGTTCCCACTCTTTCTGATGAGGGGGGTGTATCTTCAGACGA AGAATTCAGTACTGGAGATGGTGATGCTCAAGATGGACAACAATTAAGGGGAGAAGATCGTGAGCTCAAGGATAGGCTTC TACGCAAGTTTGGGAGTCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCCAAGGAA GCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAATCTGATAAGATTGAATTGGC TAAGGCAACGGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAACGACATTGGAAACCATCTGAGA ACATGCAGTTTTCTATGATGGAACATCTGACCGGACGGTTCCTTTCTGATGAATGA
Protein sequence (LotjaGi2g1v0322900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEMYGVPSTAEYADKALMPPENLIFPADYHSFLMSSSTADRIPMFGSDDFFSSAEPSSAGNQDDVASTVMKAKIASHPQ YPRLLQAYIECQKVGAPPEIARLLEEIRRENDLCKRDVVSTCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNK IEMQLSNLCTGASVPTLSDEGGVSSDEEFSTGDGDAQDGQQLRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKE ARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQINNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 308 | 293 | 8.3E-122 | – | |
| PANTHER | 16 | 308 | 293 | 8.3E-122 | – | |
| SMART | 69 | 113 | 45 | 2.3E-23 | ||
| Pfam | 71 | 112 | 42 | 9.6E-23 | ||
| SMART | 119 | 170 | 52 | 2.3E-26 | ||
| Pfam | 123 | 169 | 47 | 1.6E-24 | ||
| MobiDBLite | 177 | 204 | 28 | - | – | |
| SMART | 208 | 229 | 22 | 6.5E-6 | ||
| ProSiteProfiles | 208 | 228 | 21 | 9.83 | ||
| Pfam | 208 | 229 | 22 | 6.6E-8 | ||
| Gene3D | 227 | 301 | 75 | 1.1E-22 | – | |
| ProSiteProfiles | 228 | 291 | 64 | 13.264 | ||
| SUPERFAMILY | 229 | 301 | 73 | 8.98E-20 | ||
| SMART | 230 | 295 | 66 | 6.7E-14 | ||
| CDD | 240 | 292 | 53 | 6.16499E-14 | ||
| Pfam | 248 | 287 | 40 | 6.8E-18 | ||
| ProSitePatterns | 266 | 289 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0322900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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