Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0322900 |
| Transcript ID | LotjaGi2g1v0322900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|G7K060|G7K060_MEDTR Homeobox knotted-like protein; Found in the gene: LotjaGi2g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79803743..79810376) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGAAATGTACGGAGTGCCATCCACGGCGGAGTACGCCGACAAGGCGCTGATGCCGCCGGAGAATCTGATCTTCCC TGCAGACTACCACAGCTTCCTCATGTCCTCTTCCACAGCAGACCGGATTCCGATGTTCGGATCCGACGACTTCTTCTCGT CGGCTGAACCCTCCTCCGCCGGAAACCAGGACGACGTGGCTTCCACCGTGATGAAGGCGAAAATCGCCTCTCACCCTCAG TACCCTCGCCTCCTCCAAGCCTACATCGAGTGCCAGAAGGTAAGAATTCGTTGAAACCGTAACCGTCGCTCCGTAACAGA AACGGTTATTATCACGCTAGCTTAACGAGTTGAATTCTGTTATAAAATGGCAGGTGGGTGCGCCTCCGGAAATCGCGCGT TTGTTAGAGGAAATCCGGCGAGAAAATGACCTGTGTAAGAGGGACGTAGTTTCCACGTGCTTTGGAGCCGATCCCGAACT CGACGAGTTCATGGTCCCCCCTTAATTTCCCTCTCTTTTTCATTTCCTTTCCTTCTTCTGTCTCTTTTGTGCGCGCACGA ACACTGTCACATTTAATAAATCAATTTTTGTCTCCGATCAGGAAAGCTACTGTGATATGCTGGTGAAGTATAAATCAGAC CTGGCTAGGCCTTTTGACGAAGCGAGCAACTTCCTCAACAAGATTGAAATGCAGCTCAGCAATCTCTGTACTGGTGCTTC AGTTCCCACTCTTTCTGGTCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTCTTTTTGTTTAGTATATCTGACTGCA ACTTTTGCAGTCACTTACTGCTAGTGTTATTATAATTTTGGGACTCGATGTTCGTTGATATCTGTGCTAGCTAGCTGCTA ATTACTACCTTCTCTTTGATCCATCTTCTTGGATTATTTTTGTTTGTTAACATTAATAATGATTAATCTAAGTTGCTAAG TGCTTTTTAATTATGAAAACACGAGACGTAGCTTTTGAAGTAAAACAAGGACCCGAAAATAGGGAAAGGAAAACCCTAAT ACACAAAAAGGACATTTATCTCTTTCTCTTTGTCTTGACTGTGCCTGTGTACCACTGCTCGATCTCAGTCTCTGCGCGCA GTTAATGTGTGTGTAAGTGTGGTTTTTCTGAATGCTTTCGCTGTTTGACTTAATCTTATGCTTCTTTTGTTATGAGTGAA GATATAAAGTTTGAATTGCTTGGTCATTCAGGGGTTACCAGCGCTGTTTGCAACCTTTCGCCTTTATTTTGTTTCTACTT TGAAGTAGTAGTAATTACTAGCTTCTCTGGACTTGTTTGGTTTGTGCGGACTTTTTAGTGCATGTTTGGTTTTCAGTTGA ACCCAAAGCCGACGGAAGTCTTGGGTTGTTTTCGTGTTTAGTGCCTCGTAATGCGAGTTCTTGAATTTCAATAAACTGAA TGTAGTTGTTGTGGTTTTCAACTGTTGTTGGCTTCCCAGTCCCACACTCTTCTTAACTCTTTTTTTTGTAATTTTCCTGG TTTTTTTCTTTTCTTCTTCCTGCCCTTGAATGTCAAGGTTTTGTATCTGCACATTATGAAACTGCAGTTGTTACGTCTCG TCTCAAATAGTACACTCAGTTCAAGACAATGACCAAACAATGGATGATGATTTTTTTGATATGGGCCTTCTTACTTCTCC CATCTGGCATCCAATTAAATTGTTTCTTGTATTCTTTTGGTATTTCCAGCTCATAGTGCATGCTGTCTCTGAACAAGTTG CTGTTTAGAAAACTTTCACAGCAAATTCATTCAAACAATGTTTATGCCTGTGTTAATTAAGTGATGCATGACTCATAGTT AGTGGCATTGTTTTCCTTTTTCTTTTCTTTGCAACTGTGAGGAAACAAATGCTGGTAGCGAATATTTTGAAAATGATATC CTTGTTTAACAGTTTACTAGGTTTGAAACTTAAGAGCTATTTATAAAGTTTTTTTTTTGTTAGATTGTCTTGTGAGTATG CTGTATGCTAATCATCTTTCAAACTTAACATGTTTTAATCATTTATTTGAGGCTAGAGGAGTGCTGTAGTACTTCATTGC TTGATATATTGTTTGACAGCTGAAATGCTGTGGCATATTACATGTTCTTCAAATGATATGTGAACACATGTAGTTCATCC ATGTGAATTAGTGCTTGGCATCAAAGGAAGGCTCCCAAAGTAATATCATATCTTTATCCCTTTTAAGTTGTGTTCAAGCT TCACTAATTAATATAGATGCACAAACTTTCTTCTTTTTTCTTGCATACACCAAATTAGAATGAATCATTTCAAGTTAAAT TTTTGTGATGTAACAATTTTTCTTCTTTATCTTCCTAAATATTTTCAAAAAAACTTAATAGGATTTTCTTTTTAATGTCT GTTATACTAATATTTCATATCAAACTTTAACATTAGAGGATCCTTTTTTCATGTAAATTAACACTAATGATCAAATATAG TAACCTTCCGATTTACCTATTTCGGATTAGATGAACAAACTAACATGATCTGCCAGTAATGGCATGCAATGATTCTTCTT TGATACTTTATTGATGTATCGAGTTCCAATAGAGCACAAGTGTTGTTGCATGTTGTTTTGGTATATAAAAAATGTTCATT GGGAATAGTCTAAGGGGCTGATAGTCTGTCTGCAGCTAAAGTAATGTCAGAGTTTCTGGAATAATTAAATGGTAAGTGGC TTAGAAGAGTTAGCTCAAGATTATCAGTCAGATTATCCAGTTGGCTTCTTTCGAAAGTTGGTTTTTTGAACTTGAATAAC TTTGAAGGTTAACTGCAGGTCTTGGTTGATTGTGATTGTTTAGTTCATTCCTACTTTAAACTAGGTCTTATTTTTCTGGT TGCCTACAAACAATGATTCATGGTTGGTTTTACTTGTATAATATTTTTCACTACATAGAAGTATAGAATTTTGACATTCT GATATGCGTGGTGTGGTATATTCATTTGGTGGTTATCAAAAATTCATCATTACTTTTCTTGTCTTTCAATTTGGTTACTG AACTTTATTGATGCTAGAAGATTAGTTATAGTTTCCCTTGCCGATCTGCTAACTGTATAGAGGCTGGCACACAATAGATT CTAATATATCAATTTTGACAGAATTTTTGATGTTGTCAAGCGTGGTCACTGATCAGGTTGGTAATAGTTGGCTACTATTG TTTATGTTTGAAAGTACAGATTACCTTTTCAGTGGTGATGTTTTAATTTGAAAATGATTTAAAATTGCATCTTTTGATGG ATTCTCCTTCATCATCCTAACCTTTGCCTCAAAAGCAAAGTTGATAGGATGTAAAATTCGTTGTTTCTAATTTCTTCTAT CTTCTTTGATCTTGTTTTGATTTTTATTCTTCTTGTTCTTCTGCTGCAGCCACTACAGGCGCATAAAGGATCTTGTTTAT TAGAATAAGGTTTTAAGGTGCTTCAAGAAAATTTTGTGACAATCTTTGGGTTTATAATATTGTTTTCCTCATGGAATTTC GAAATAATGGTTTTTCCAATTAATCATTGTTGACATTGATGCTGTCTTCAATTATGTCATTTCTAGAGCTTGTTAAACGG GTTAAATATCTTATTGAGAAAACTTTCTTGCATGTTCTAAGCGATCCGTTTGAGTAACAGTTGTACTTCTCTATTGTTTT TAAACTAATCTCATCATTCTTTGGATTTTGGATATTCTTTCACTTGGAAACTTTTGTATAACATGTTTGATTTCTTGCGT TCTTTAGGCCTCTACATGTGCTGCACTCTGATTTATGTTTTGGGTGATACAATTGTTGGGATGTTAATTAATTGGTGACA TGGAGTGTTTATTTTTTTATCAGCATTCAGCACACATTCCAAAGTAGTGTGAATGTGTTTTTGGTCGGTCCATATCTTGT CTCATTGGAATGAATTTGCTATTGGCAACGTAAATACAAATACACACATAATCAGCTCAATTTGAAGTCTAAGTTATTTT ACTATCTGACTAGACACGTAAAGTTAGATAAGAATAGAAGAGATAACTATATGATGTGATTGAAAGAGAGATAGAAAGAA AAAGTGGTGTTAGGATGTGTATGCACTTTATTTACTACCGTCTAGGCGTCTACCTATCATTACTCATTTCACAAGTAGTA TGTTCCTGTACTGTTCAGTGTATACGTTAGGTAACATTAGGGTGGTATTTGGAGGAGTTTTCCTATTAGAGCTTATTTGA ATCTGTCCTATGATAAATGAATTGGAAACTATTTCATTAACCAGCCTATATATAAGCTATTTAGGCTCATTTGAGCCTAT TGCAATGAACTTGTCACGTTAACTCATGAGTGCATATTGAAGAAACTCTTGCACAAGTTCTTATAAGCATTATTAAGTGC TCAATTAATCTATGCTGGGGACTAAAATATAAAATTTCAGTAAGCCTTGCCCTTATTGGTGGCATTGGCATAGGTTTCAC CAAGTGCTATCTGGCATAGGAATGTAAAGATTTCGTTGACAAAACGATGCAATTATTAGTGGAGAAAACAAAAGTTATCG GATATCCAACATCATATGGACTTTTCAAATGTCATGGTTCCTTTCCCTAGCTTGCAATGCATGAGGGAGCATAAGAGCTT GAAGGATGTTTAATATAGGGGCTGGTGAATATCTATCTGGTTACAACCTTTCTAAAAATCCCGTGTAGAGCGGGGGTTAT ATTGATCTAATCCTCAAATCTTTCACATGCACTCCCGCAGTTCTCGCTGTTTTCTGCTGCAAAAGCTTTTTGTTTGAGAG AACGTTCATATATCTTCCCCACGCACTCTAGCGTGGCCTGTCTTAGTGCTCTTTTTCGATACTTTGTTCTCATATGCCAT TATGGGCTAATGTCATTGACCCATGGGTAATGGGATGATGCACGTAACACTTGTCAAACTCCAATTGCCTTTTCTTTTTG GTAAGACATGGCCCCTCTTTGTAAAGCAACCTGTCTTATTCTCTTGTGCCTGAATTAAAGCATGTACTTTCCCACGAGGG TTGAAGTTTGGTTGGACATTTGTTGATGGGGTCGAGATTCGCTCTAATGCCACTACTACAAGGTTTTTGTGTCGCAAATT GCAGTTAAAATTGTTGCACGAGAACAACGTTTCTAAATTTCATTGATGTCTACGTGGTTAGTTTTGTCTAACGATGGCTT ATCATTTTTAAAGATCAATTTTTAGCAATGGAATTAGTTAAAGCTTATTTATATTAATTTCAAAATTAATTTTAAAAAGG TTTTCAAACATGCTCTAATCTTGAGTTCAATGTCACTCTGGTTTAGGTCATAGTAAGTGACAAAGGATGGAACTAGGCAC TGACACTGATAATGCTTTCACATAACTGTCCAACCTAGGTCTGCTGTGTACAGTGTACTCTCATGCGAGGGTCAAATCCT TGTCGGACTGAGTGGTTGTCAGAGCAAATTCGTGGGTCCTCGTGGCTACTATGCTTGAACAATTTTGGCCTTTTAGTTAT TAAATTTATTTATAACTTGCCTATTGTTGAGTTTTTTAATTTAAATTTGTGTAGACTAGTTCAAAAAAAAAATTGTGTTG ACAGCTTTATAGTAAATTTGAACAAACAATTTTTTTTTTTTGACAGTAACAAACAATTTAATTTAGTGTTATTTATAAGT TAATTTTAAAATTTGTTGAAATAAACGTAAGTTTTCTACAATTCCTTTGCGGGTTGTCTAAATGACCCTAAGAAAGTTTG ATTAAATAACTTATCGTCTTATCACATTAAAGATAAGTAAGTTAAAATTTTTATATTTTATTTATTAATTTTTTTATTAA AAATCTTAATGGTCTATTGAGTTGTGGGTTAGTAACCCACATGAGTCATTTACCCAACCTCTTTATTTATTTGCAAGTTT TGTCAAGCAAGTGTCTTAAAGATAATAAGGAAAGAGAATTACACAATTTATATTTTTTATTTAATATTTTCTATGTCTGT TCACTTGGTGGCTTGGTCCATGTTTTGAGGATTTTTTTTTTATCTTAATTGAATTCAATTCTAAGTTGCATTCTTTTAGT GATTTTTATTTTTATATTGCTATTATTATTTGGCTAGATGAGGGGGGTGTATCTTCAGACGAAGAATTCAGTACTGGAGA TGGTGATGCTCAAGATGGACAACAATTAAGGGGAGAAGATCGTGAGCTCAAGGATAGGCTTCTACGCAAGTTTGGGAGTC ACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCCAAGGAAGCAAGACAAACACTGCTT CAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGTAAATACTTCATTGCATGCTTCTGTTTGTTTCATTTTCAT TCCCATACAAGCAATTACTGAACTTCACACAAGCTTTCAAATGAAAAACTTGTTTTTTTTTTTTTGATAATCTAGGAATC TGATAAGATTGAATTGGCTAAGGCAACGGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAACGAC ATTGGAAACCATCTGAGAACATGCAGTTTTCTATGATGGAACATCTGACCGGACGGTTCCTTTCTGATGAATGA
CDS sequence (LotjaGi2g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAAATGTACGGAGTGCCATCCACGGCGGAGTACGCCGACAAGGCGCTGATGCCGCCGGAGAATCTGATCTTCCC TGCAGACTACCACAGCTTCCTCATGTCCTCTTCCACAGCAGACCGGATTCCGATGTTCGGATCCGACGACTTCTTCTCGT CGGCTGAACCCTCCTCCGCCGGAAACCAGGACGACGTGGCTTCCACCGTGATGAAGGCGAAAATCGCCTCTCACCCTCAG TACCCTCGCCTCCTCCAAGCCTACATCGAGTGCCAGAAGGTGGGTGCGCCTCCGGAAATCGCGCGTTTGTTAGAGGAAAT CCGGCGAGAAAATGACCTGTGTAAGAGGGACGTAGTTTCCACGTGCTTTGGAGCCGATCCCGAACTCGACGAGTTCATGG AAAGCTACTGTGATATGCTGGTGAAGTATAAATCAGACCTGGCTAGGCCTTTTGACGAAGCGAGCAACTTCCTCAACAAG ATTGAAATGCAGCTCAGCAATCTCTGTACTGGTGCTTCATCACTTACTGGGTTACCAGCGCTCGGGGATGAGGGGGGTGT ATCTTCAGACGAAGAATTCAGTACTGGAGATGGTGATGCTCAAGATGGACAACAATTAAGGGGAGAAGATCGTGAGCTCA AGGATAGGCTTCTACGCAAGTTTGGGAGTCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAG CTTCCCAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAATCTGATAA GATTGAATTGGCTAAGGCAACGGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAACGACATTGGA AACCATCTGAGAACATGCAGTTTTCTATGATGGAACATCTGACCGGACGGTTCCTTTCTGATGAATGA
Protein sequence (LotjaGi2g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEMYGVPSTAEYADKALMPPENLIFPADYHSFLMSSSTADRIPMFGSDDFFSSAEPSSAGNQDDVASTVMKAKIASHPQ YPRLLQAYIECQKVGAPPEIARLLEEIRRENDLCKRDVVSTCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNK IEMQLSNLCTGASSLTGLPALGDEGGVSSDEEFSTGDGDAQDGQQLRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGK LPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQINNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 312 | 297 | 1.3E-121 | – | |
| PANTHER | 16 | 312 | 297 | 1.3E-121 | – | |
| SMART | 69 | 113 | 45 | 2.3E-23 | ||
| Pfam | 71 | 112 | 42 | 9.8E-23 | ||
| SMART | 119 | 170 | 52 | 2.3E-26 | ||
| Pfam | 123 | 169 | 47 | 1.7E-24 | ||
| MobiDBLite | 185 | 208 | 24 | - | – | |
| ProSiteProfiles | 212 | 232 | 21 | 9.83 | ||
| SMART | 212 | 233 | 22 | 6.5E-6 | ||
| Pfam | 212 | 233 | 22 | 6.7E-8 | ||
| Gene3D | 231 | 304 | 74 | 1.1E-22 | – | |
| ProSiteProfiles | 232 | 295 | 64 | 13.264 | ||
| SUPERFAMILY | 233 | 305 | 73 | 8.98E-20 | ||
| SMART | 234 | 299 | 66 | 6.7E-14 | ||
| CDD | 244 | 296 | 53 | 4.65465E-14 | ||
| Pfam | 252 | 291 | 40 | 6.9E-18 | ||
| ProSitePatterns | 270 | 293 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0322900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…