Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0330200.4

Overview

Field Value
Gene ID LotjaGi2g1v0330200
Transcript ID LotjaGi2g1v0330200.4
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SY17|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:80594521..80599284) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGCTTCCTCTGT TTACTACAAGGTCCTCTCCTTTTCCATTTCAAATCAATTACCACTAATCATGTATCTATAGCTATGATGAACCTTATTCA CCATTTTCTCTCAAATTCCTTAACCGTTTAACTACCTGGAACTCATTGTCTTTTGATTTTTCCATTGTAGTCCTCTTTGC CTGATGAAGCTGTCTACGAGAAAACAACTGTTACGGTATGTTCTGATTGTAAATGATAGTATATGATATCATCATCATTC ATCACTTTACTTTTATGATTCATGGCAAGGACTCTTGCACTTGATGATTCCTATGTACTAGTTAGTTATTCATGATGTTT TCGTTTGAGACTGTTGTCTTTGCAGTGGCCAAAGCAATTGAATGCTCCACTCGAGGTTGTTGATCCTGAAATTGCTGATA TCATTGAGCATGAGAAAGCTAGACAATGGAAGGTAAACTTTTCACTTTTCAGTGTTAACTTATCTTACTCTATACTATTT ACTTTTGCATCTTTTCCCCTAAAACCTTTGTGTTGAACTTCAAAATTATTCTGCACCTTTTTGTTTGATTTTGTGTCGTA TGATGCAAAATATGATACTCAATTCCCCATCAATAGGATTTTTAGCTTTCAAAGGACTTAGCTTTTTTTCCCCACTATTT TTGAAGGGGCTGGAGCTGATACCCTCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAA CAAATACAGTGAAGGATATCCCGGTGCAAGATACTATGGTGGAAATGAGTATGTTGGTCTTTTACTTTCTGTTTGCGATT GTAATGATAATTCATGGAAGCCAATGTTATCATTTTGGATTTTATATTTTGAGTGCCTAATTTGAACCAATTCTAAGATT ATGGACATTTCAATTTCAGGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGAT CCAGCAAAATGGGGAGGTAAGAACATTAGAAAAACCAACCATTTTTATTTTTTGATAGATTGTACAACTACTAACTTAGC TAGTAGCCTAGTGCTTTGTCTTTTGTCCTAAGCATGCAAGTATATATATATCTCTTGATTGGGTTTCATTTTATTCTGGT TTTGAGTGGTTTTACTTTTTCTCAAAACATCAAATTAGCAACAGCTTGAACCATTGAAGTCTCCCATGACTTACGGCATG TTTGGATCAACTTATTTCTTCTCAGAATCAATCCTGCCGCTCAAAAACTAATCACATGAGATTCTCCCCAAAATTAATTT TGACTTCAGAATTAATTGTATAAGGATTTCCAAAGATGCTATTAGCTTGTTAGCTTGCTAAAATTTGAAGTGATCTGCCT TGGACTTCTCTGAGTGTGGGGGATTTTTATATATATATTAGTTATTAGATAGATGGTGAGTTTTCTCATATGTCATTGTT ACCCCTAACTTGCAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCT CATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGGTATTATCAGCTTCCATCAT TCATTTCCTGTTATAATCAAATCTACAATAAATGTATGCCTTGTTGGTCATTGTTGACATTTTTCTGGAATTTCATCCAA GATTAGTTAGAAATAACTTTATAGTCGTTAATGAAAATTAAACTTGTTTACTGCGTACTTATATTTCTATTATTGTATTA CAATTAATAAATCTTTTTAGATTATCATTAGATGCCCTCTTTATTTCTTTGTTCTTCTTTTTCCTCCCTCCAAGAAGCTT TCTTTCTTCATGTAAACTGTTTTCTGTTTAACTATCCTGATGATAAATTAACAAATACTAATTTCATTATGCAGACTGAC ACCAAAAAGATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTA TGACCAGGTATCTTTGCAGTTCCTTTTATCATGGTCATGATCCTTTTTGCAATAATCCTCACTTTTGGGTTAGTTTTTTA TACACAATTGGCTTAGTCCACTTAGTGCGAAAAGGCTTGGTAGTTGTTGTATTTATGCACTATTAACTTGATCATACTCA TTCGAAGTGTCCATTAAAGACTAGCTCTTAGAACTAGAAGATTCACATGATATACATGTGGAGAGTTTGGTTACATGCTG CATACATATGAAACGAACTCAGATAGTTTTTTTACCACATTACAATATCTATAACTAGTGACTGATGGTCTTAAGTTCTT AAAACCAACTAATGCTTAAAGATGATATTTCTGTAGCCACTAAATAAACCTTTTACTTTTAACTTGACTATGAGAGGCAA TGGGAGTTGTTTTGTTCCACATTTCCGTTGCATCACTATCCAAAGTGGTAGACAATTTATTTGTCTTCTCGTTTCTCTTC TAATCTATTGCAATTTGGTGAGTGATTAACAATTAATCAAATTCAGTTTGCCCTGAGTGTGTCAATTCTCAATTTTGCAG CATACTTGCTCAGTTGCTCCTTAAGTTCAGAATAATATTTATGTACCATTTTTGAGTCAGCTTGATGTTTTTATGACGTG AACAATTTTGAAATGCAGTTGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGCTTATGC CCGTCTATATGATTATGACCGCATACGCAAGGTAATTTGAAGTTAGCATAGAATGATAGAAAGTGGATGTGTTTCTTAGA ATTTTTGGTTTTTAATTTGAATGGGTATCTGGAACACTCAGAGGGCTGAACTAATTGAACATGTTACAGGTGTGTGATAA ACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTATCCCTTCACCTTTTGATT ATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTG AAAGAAATCAACAAACAAGGAAAGGAGGTACATTCTTAACAATTCATTTAACAATATAGTGACTAACAATTTAACAATTG TTTTTAATATTCTGGCTATTTATGCTTATTCCTACATAAGCTCATGGCTAACATGCAACACTATATTTTCTTATGTCTTT GAAGGTGCTGTATGACTATGAGGACAAAATCAACCAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACAACCATACAA TTACTGGTTTAGCTGTTGCATTGAAGCAGGTACTGCATAGAGAAGATTATGATGAAATTTATTTTTCTGGAAATTAAATT GTGAGTGACTAATGAAAAGGATCTATGCCAGTGTCTTTTTTTCTTGATATTGAGGTTTTTATATTGAATTGTAATTTCAG CAGACAGTAAAATGGATATAAAGTAAGTTTTTTCATCATTTAGCTTAATAAGAGGGTCGGTTTGAGGTGTTGATTTGGAG AGAGACATAGCTTTTGAATGTTACTGATTGGATCTTGAAAGAAAGTATGGAATGTGATGTATATTCATGAAATGATTAGT TTCTTTTGTTTTTCCTTGTGTTGGTTCAGGCTACAACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGC TCAAAATTTGCACAGGTACATTGGGAAGGATAACTTAACTGCCTCTTTTCCCACATATTGGATCTTAATACAGCACAAGG TTCAGTCTCCTTGCAGGAAAAAAGAGATTAACTCCATGTATTTTAAGTTTTAACACTAAATATGTTGCAGGCTCTGAGTG AGAGGGGCTATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGTAACTAACAAC TACTTTGACTTTCCAAATAAGCATTGTCGAGTCTATTATGCTTTGCAATTGTAACATTCAGTGCTAATAATTGTGTTACG GTCACAAACCTCACATTAAATTACAAATTATTTTTTGTGATTAATTCAAGATATCAACCCTCATAATATAAAGTGAGACT GGTGCTCTTTTTTCAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAATCAGTTCACATTGCAGCAAATAAAAACA CCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCGGATGGGTACATGCTTTTCATTGCTAATATATTGATCT TGATTCCATATTCAATTACTTGAATTTGATCTTGATAACTCTTGTGGCTTTCAGGAACTCCTGCTCTTACTTCTAGGGGA TTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTGTAAACTTGGCTTTGAAGGCCAAGGCAGAGAG CAAAGGTTCCTAAGTTTTCAATATCCTAATCCTTCATGAGTTTGTGTTTGTTTTATCTGGACAAAGCTAGTATAAGTTGC TGGGTGCTTGAATAAGCTTAACATGTAGTTGTGGGTGATTTTTCTTTTGAGCCAGGAACAAAATTGAAGGACTTCTTGGC CACAATTCAGGAATCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTC CAACCATTGGTTTTGAGAAGGCAACAATGAAGTACAAAGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0330200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGCTTCCTCTGT TTACTACAAGTCCTCTTTGCCTGATGAAGCTGTCTACGAGAAAACAACTGTTACGTGGCCAAAGCAATTGAATGCTCCAC TCGAGGTTGTTGATCCTGAAATTGCTGATATCATTGAGCATGAGAAAGCTAGACAATGGAAGGGGCTGGAGCTGATACCC TCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAACAAATACAGTGAAGGATATCCCGG TGCAAGATACTATGGTGGAAATGAGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGT TGGATCCAGCAAAATGGGGAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTA AAACCTCATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGACTGACACCAAAAA GATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTATGACCAGT TGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGCTTATGCCCGTCTATATGATTATGAC CGCATACGCAAGGTGTGTGATAAACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGG TGTTATCCCTTCACCTTTTGATTATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTA TGATCTTCTTCAGGAAGGGGGTGAAAGAAATCAACAAACAAGGAAAGGAGGTGCTGTATGACTATGAGGACAAAATCAAC CAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACAACCATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGCTAC AACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGCTCAAAATTTGCACAGGCTCTGAGTGAGAGGGGCT ATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGGTATTGATGGCTCCAGAGTT GAGAAGGTGTTGGAATCAGTTCACATTGCAGCAAATAAAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGG CATCCGGATGGGAACTCCTGCTCTTACTTCTAGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATG CAGCTGTAAACTTGGCTTTGAAGGCCAAGGCAGAGAGCAAAGGAACAAAATTGAAGGACTTCTTGGCCACAATTCAGGAA TCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTCCAACCATTGGTTT TGAGAAGGCAACAATGAAGTACAAAGAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0330200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMAMALRRLSSSIDKPLRPLFNASSVYYKSSLPDEAVYEKTTVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIP SENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALL KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEASAKLFRPKLIVAGASAYARLYDYD RIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKIN QAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQALSERGYELVSGGTENHLVLVNLKNKGIDGSRV EKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVKEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFLATIQE SSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11680:SF40
14 515 502 0.0 –
PANTHER
PTHR11680
14 515 502 0.0
IPR001085
PIRSF
PIRSF000412
37 511 475 3.2E-169
IPR001085
SUPERFAMILY
SSF53383
42 507 466 1.49E-181
IPR015424
Hamap
MF_00051
53 506 454 42.947
IPR001085
Pfam
PF00464
55 451 397 1.3E-210
IPR039429
CDD
cd00378
57 467 411 0.0
IPR001085
Gene3D
G3DSA:3.90.1150.10
58 503 446 5.4E-220
IPR015422
Gene3D
G3DSA:3.40.640.10
83 356 274 5.4E-220
IPR015421
ProSitePatterns
PS00096
277 293 17 -
IPR019798

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0330200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…