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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0330200 |
| Transcript ID | LotjaGi2g1v0330200.6 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SY17|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80594687..80599284) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCAAATTCCTTAACCGTTTAACTACCTGGAACTCATTGTCTTTTGATTTTTCCATTGTAGTCCTCTTTGCCTGATG AAGCTGTCTACGAGAAAACAACTGTTACGGTATGTTCTGATTGTAAATGATAGTATATGATATCATCATCATTCATCACT TTACTTTTATGATTCATGGCAAGGACTCTTGCACTTGATGATTCCTATGTACTAGTTAGTTATTCATGATGTTTTCGTTT GAGACTGTTGTCTTTGCAGTGGCCAAAGCAATTGAATGCTCCACTCGAGGTTGTTGATCCTGAAATTGCTGATATCATTG AGCATGAGAAAGCTAGACAATGGAAGGTAAACTTTTCACTTTTCAGTGTTAACTTATCTTACTCTATACTATTTACTTTT GCATCTTTTCCCCTAAAACCTTTGTGTTGAACTTCAAAATTATTCTGCACCTTTTTGTTTGATTTTGTGTCGTATGATGC AAAATATGATACTCAATTCCCCATCAATAGGATTTTTAGCTTTCAAAGGACTTAGCTTTTTTTCCCCACTATTTTTGAAG GGGCTGGAGCTGATACCCTCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAACAAATA CAGTGAAGGATATCCCGGTGCAAGATACTATGGTGGAAATGAGTATGTTGGTCTTTTACTTTCTGTTTGCGATTGTAATG ATAATTCATGGAAGCCAATGTTATCATTTTGGATTTTATATTTTGAGTGCCTAATTTGAACCAATTCTAAGATTATGGAC ATTTCAATTTCAGGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGATCCAGCA AAATGGGGAGGTAAGAACATTAGAAAAACCAACCATTTTTATTTTTTGATAGATTGTACAACTACTAACTTAGCTAGTAG CCTAGTGCTTTGTCTTTTGTCCTAAGCATGCAAGTATATATATATCTCTTGATTGGGTTTCATTTTATTCTGGTTTTGAG TGGTTTTACTTTTTCTCAAAACATCAAATTAGCAACAGCTTGAACCATTGAAGTCTCCCATGACTTACGGCATGTTTGGA TCAACTTATTTCTTCTCAGAATCAATCCTGCCGCTCAAAAACTAATCACATGAGATTCTCCCCAAAATTAATTTTGACTT CAGAATTAATTGTATAAGGATTTCCAAAGATGCTATTAGCTTGTTAGCTTGCTAAAATTTGAAGTGATCTGCCTTGGACT TCTCTGAGTGTGGGGGATTTTTATATATATATTAGTTATTAGATAGATGGTGAGTTTTCTCATATGTCATTGTTACCCCT AACTTGCAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCTCATGAT AGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGGTATTATCAGCTTCCATCATTCATTT CCTGTTATAATCAAATCTACAATAAATGTATGCCTTGTTGGTCATTGTTGACATTTTTCTGGAATTTCATCCAAGATTAG TTAGAAATAACTTTATAGTCGTTAATGAAAATTAAACTTGTTTACTGCGTACTTATATTTCTATTATTGTATTACAATTA ATAAATCTTTTTAGATTATCATTAGATGCCCTCTTTATTTCTTTGTTCTTCTTTTTCCTCCCTCCAAGAAGCTTTCTTTC TTCATGTAAACTGTTTTCTGTTTAACTATCCTGATGATAAATTAACAAATACTAATTTCATTATGCAGACTGACACCAAA AAGATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTATGACCA GGTATCTTTGCAGTTCCTTTTATCATGGTCATGATCCTTTTTGCAATAATCCTCACTTTTGGGTTAGTTTTTTATACACA ATTGGCTTAGTCCACTTAGTGCGAAAAGGCTTGGTAGTTGTTGTATTTATGCACTATTAACTTGATCATACTCATTCGAA GTGTCCATTAAAGACTAGCTCTTAGAACTAGAAGATTCACATGATATACATGTGGAGAGTTTGGTTACATGCTGCATACA TATGAAACGAACTCAGATAGTTTTTTTACCACATTACAATATCTATAACTAGTGACTGATGGTCTTAAGTTCTTAAAACC AACTAATGCTTAAAGATGATATTTCTGTAGCCACTAAATAAACCTTTTACTTTTAACTTGACTATGAGAGGCAATGGGAG TTGTTTTGTTCCACATTTCCGTTGCATCACTATCCAAAGTGGTAGACAATTTATTTGTCTTCTCGTTTCTCTTCTAATCT ATTGCAATTTGGTGAGTGATTAACAATTAATCAAATTCAGTTTGCCCTGAGTGTGTCAATTCTCAATTTTGCAGCATACT TGCTCAGTTGCTCCTTAAGTTCAGAATAATATTTATGTACCATTTTTGAGTCAGCTTGATGTTTTTATGACGTGAACAAT TTTGAAATGCAGTTGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGCTTATGCCCGTCT ATATGATTATGACCGCATACGCAAGGTAATTTGAAGTTAGCATAGAATGATAGAAAGTGGATGTGTTTCTTAGAATTTTT GGTTTTTAATTTGAATGGGTATCTGGAACACTCAGAGGGCTGAACTAATTGAACATGTTACAGGTGTGTGATAAACAAAA AGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTATCCCTTCACCTTTTGATTATGCAG ATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTGAAAGAA ATCAACAAACAAGGAAAGGAGGTACATTCTTAACAATTCATTTAACAATATAGTGACTAACAATTTAACAATTGTTTTTA ATATTCTGGCTATTTATGCTTATTCCTACATAAGCTCATGGCTAACATGCAACACTATATTTTCTTATGTCTTTGAAGGT GCTGTATGACTATGAGGACAAAATCAACCAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACAACCATACAATTACTG GTTTAGCTGTTGCATTGAAGCAGGTACTGCATAGAGAAGATTATGATGAAATTTATTTTTCTGGAAATTAAATTGTGAGT GACTAATGAAAAGGATCTATGCCAGTGTCTTTTTTTCTTGATATTGAGGTTTTTATATTGAATTGTAATTTCAGCAGACA GTAAAATGGATATAAAGTAAGTTTTTTCATCATTTAGCTTAATAAGAGGGTCGGTTTGAGGTGTTGATTTGGAGAGAGAC ATAGCTTTTGAATGTTACTGATTGGATCTTGAAAGAAAGTATGGAATGTGATGTATATTCATGAAATGATTAGTTTCTTT TGTTTTTCCTTGTGTTGGTTCAGGCTACAACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGCTCAAAA TTTGCACAGGTACATTGGGAAGGATAACTTAACTGCCTCTTTTCCCACATATTGGATCTTAATACAGCACAAGGTTCAGT CTCCTTGCAGGAAAAAAGAGATTAACTCCATGTATTTTAAGTTTTAACACTAAATATGTTGCAGGCTCTGAGTGAGAGGG GCTATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGTAACTAACAACTACTTT GACTTTCCAAATAAGCATTGTCGAGTCTATTATGCTTTGCAATTGTAACATTCAGTGCTAATAATTGTGTTACGGTCACA AACCTCACATTAAATTACAAATTATTTTTTGTGATTAATTCAAGATATCAACCCTCATAATATAAAGTGAGACTGGTGCT CTTTTTTCAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAATCAGTTCACATTGCAGCAAATAAAAACACCGTTC CGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCGGATGGGTACATGCTTTTCATTGCTAATATATTGATCTTGATTC CATATTCAATTACTTGAATTTGATCTTGATAACTCTTGTGGCTTTCAGGAACTCCTGCTCTTACTTCTAGGGGATTCGTT AAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTGTAAACTTGGCTTTGAAGGCCAAGGCAGAGAGCAAAGG TTCCTAAGTTTTCAATATCCTAATCCTTCATGAGTTTGTGTTTGTTTTATCTGGACAAAGCTAGTATAAGTTGCTGGGTG CTTGAATAAGCTTAACATGTAGTTGTGGGTGATTTTTCTTTTGAGCCAGGAACAAAATTGAAGGACTTCTTGGCCACAAT TCAGGAATCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTCCAACCA TTGGTTTTGAGAAGGCAACAATGAAGTACAAAGAATGA
CDS sequence (LotjaGi2g1v0330200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCTGTTGGCTCTGTCATGACAAACAAATACAGTGAAGGATATCCCGGTGCAAGATACTATGGTGGAAATGAGTT TATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGATCCAGCAAAATGGGGAGTGAATG TGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCTCATGATAGAATCATGGCACTT GATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGACTGACACCAAAAAGATATCCGCGGTCTCTATATTTTTTGA GACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTATGACCAGTTGGAGGCATCGGCTAAACTCTTCAGGC CAAAATTAATTGTTGCGGGAGCTAGTGCTTATGCCCGTCTATATGATTATGACCGCATACGCAAGGTGTGTGATAAACAA AAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTATCCCTTCACCTTTTGATTATGC AGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTGAAAG AAATCAACAAACAAGGAAAGGAGGTGCTGTATGACTATGAGGACAAAATCAACCAAGCCGTTTTCCCAGGACTGCAAGGG GGTCCTCACAACCATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGCTACAACTCCAGAGTATAAAGCATATCAAGA GCAGGTTCTCAGTAATTGCTCAAAATTTGCACAGGCTCTGAGTGAGAGGGGCTATGAGCTTGTTTCCGGTGGAACTGAGA ATCATCTAGTTTTGGTGAATCTGAAGAACAAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAATCAGTTCACATT GCAGCAAATAAAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCGGATGGGAACTCCTGCTCTTAC TTCTAGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTGTAAACTTGGCTTTGAAGGCCA AGGCAGAGAGCAAAGGAACAAAATTGAAGGACTTCTTGGCCACAATTCAGGAATCATCTTACTTTCAAACAGAGATTGCA AAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTCCAACCATTGGTTTTGAGAAGGCAACAATGAAGTACAAAGA ATGA
Protein sequence (LotjaGi2g1v0330200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMAL DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEASAKLFRPKLIVAGASAYARLYDYDRIRKVCDKQ KAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQG GPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQALSERGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLESVHI AANKNTVPGDVSAMVPGGIRMGTPALTSRGFVKEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFLATIQESSYFQTEIA KLRHDVEEYAKQFPTIGFEKATMKYKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 6.0E-290 | – | |
| PANTHER | 1 | 426 | 426 | 6.0E-290 | ||
| CDD | 1 | 378 | 378 | 0.0 | ||
| PIRSF | 1 | 422 | 422 | 2.6E-155 | ||
| Gene3D | 1 | 267 | 267 | 4.3E-203 | ||
| SUPERFAMILY | 1 | 418 | 418 | 1.15E-165 | ||
| Pfam | 1 | 362 | 362 | 8.2E-195 | ||
| ProSitePatterns | 188 | 204 | 17 | - | ||
| Gene3D | 268 | 414 | 147 | 4.3E-203 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi2g1v0330200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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