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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0335000 |
| Transcript ID | LotjaGi2g1v0335000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RNF14; TAIR: AT1G32340.1 NDR1/HIN1-like 8; Swiss-Prot: sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14; TrEMBL-Plants: tr|V7CJB6|V7CJB6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0335000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81104970..81111065) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCCGGCGCAGTGTTCCACTTCCAGCGAACCCAAACTGGTCTGGTCCAGCGGTGAAGGGGCAAAACACAAACAACCAT GTTGGCTGCTAATAATAATTTCGAAGAAAATAAGGTTTTAAATAACGCGTGCGTTTGTTTAATCAACTACTACCAATCTG CAATTCTATTTTACTAGATTTTAGATTAGATTCACAACAACAACACCACACAATCACAAAACCACAATCGAGGCGTTGCA GTGCAGTGCAGTGCAGCATCAACATGAGAAGAAACCACCATCAATCCTCCACTGCTAACAATCGAGGACGACCGCAACAG TATCGCCCCAAATTCACATCCCGCTATGTCACCAAATCCCAACTCGTTCCTCCTCCTCCTGCTCCCAACTCTGTGGCGGC GGAACAAGCTGCACCTGATGATGACCATGTTGGGAAAAATCACCACAAAGGTGCATCAGAGTCAGAGCTGAACGGTAGCA ACATTGATGAGACGAATCACGTAGCTGGTCCAAGCGAGGCCAACCAAGAAGATGATGATATCAATGATCTCATGGGGAGG CTTGATAAGTTGCTCACTGAAATTGATCAACCTGGTGAATTGTCCGAGGACCAGATCGCTATCAATGACCAATTGCAGCA AGATGAGGTAATAATTACACTGCAACTCTTTTTGTTCATAAGAAATTATGAACTGGTCTTAATGTTTGTTTGGTTTTGTC GTTACAAGTACTGTAATCATTTCTGGGAAGAAACTATCAGTCTAGGTTCTGGACTGCTTTGGACCACTGATACAAATTTG CCATGCTATTAATCTATATTTTCTGCCATCAATAACAATAATGTTTTAAAGTAGGCAAATAATGTTATGCAGGGTAAATT TTATTTCAAGTGTATCTTAGTATCAAACCACAAAACTTCAAGGATGGATGCATTGGTTGCATTCTTACTTCTATTAGTAG CTCACTTAACTTACTAAGCATGAGCTTTGTCCAAACTTTCGGTTGCAAATTGGATTAAGAGGGATGCGCAACCAAAGTCT TGAATGCTTTGGTTTCCTTCAATTTGTGTAATGTTGTGTAATGTTGTGCACTTGGTTTGGGTGAACCAATATTATGGCAC CTGTGGTGGCTGTCTTGCTTTTCCTTGCTTGCTCACTGAATTTCCTGTTATGCAGTTGCTAGTGGTGGAGTCAATTTATG GAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGGCCTTCGTTGTTTTCAGGTCTTGCTGTAAGCCAACGACATAATTTTG GCAAACTTCCCCTTGTTTTGTTTTAACCTTTTCTTTGCAATGCAAATTCTCTGAAAACCAAATTCTGAATCTTTTCTCTC TCTCTCTCTCACTCCTTCTCAGATACACATATGCATTGATATTTTGGGCGAAATTGCAATTATCGCTAAGCTGAACTCTT CTAATGATCTTGAGACTGTAAGCAGTAATTCAGATGACTTCTTGTACTCTTTCAAAGTCCGGTATCTTCCACCTATTGTA TTGACATGTTTATTACCTAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTCAAGTGGTTGGAACCCTT AAAGATTTTAAGTTTATGTTCTGAGTTGGACTCAATATGGGAAGAGCAGCAAGGGCAGGAAGTAATTTACCATTGGGTAG AATGGTTACATGGTTCTTCTCTTTCTCATCTGGGATTTGATAAGGAGATTACACTAGGTCCTTGTGACGTCAATCGTGTT GTAGACAAGCGGGTGGTTTCAGGAACCAAAAGCATTGATCTTGATATTCCTTTTTTACGAAGTTATAACAATGAGAAACA CCATGAGAACTTCCTAAAAGAATTGCATGAATGTTGCATATGCTACAGTGAATATCCAGGTAATTTCCAATCTATGATTG ACTTAATCTATAGACATCATTAGATATATTTCAGGAATTAGTATTTGAGAGACTCAGTCCACAATTTTTATCCCCCCCCC CCCCCATCTGAATATTCTTTAACTCAGCATACCATCACAACAGTTTTGATTAACTATAATAATTTGTCAGTTATGTGGGG TAGGCTATTACATAACTTTTATTTTGGAAATTTCACAGGCAAAAGCATGTTTGCTTGTACAATCCAAAAAGTTTTTTTTA ATATATTACATTTTATTTTATTTGAAAAATACATTGTAGTGTGCACATAACCTGAGTAACCTATGGTAGCTTATGTTGTT GTAGATTAATATGAAGCTGTTCATCTTGTTAAATGAAACCATGTCTTTGATCTGATTTCTTCTTAAATAAGTTAATGCCT TCATGCCATTTCAATCCTGACATTGCTTTTGATGGATCGGATATCAAATCCCTTTACAGTTTTTGGGCTCTGAATGCAAA ATGTATTTGTACTCGTTATCTCTTGTATTTTGATTAATCTCTTCTTGTGTACGTTAAAATTCTTCTTGTGGAAGAGCTGA TGGGACACCACCTAAGCTGATATGCTCATTGGCTACCTCATCCCATTGATAATGCATGGATAATTTCATTTGCGTTGTTC GCTTCTGGTGAGAAGTTTTGCATTGACTAGAGATATGGCCAAATAATTGTTTATATAGGGTAGAGAAACCCTCACCCTGA AGCTAGCATTTGGAGTAGAGTTAGGCCTAACACAAATTTCAATATGGTATTAGAGCCTATTCTAGATCTGTTTATTGGAG ACCACCATATATGAGCAACTTGCAAATGTTCATTCCTGCAAATTCCACGCTTCAGATGTCTAGCCTTGGGCATGAGGGTT GTGTTGAGAAGTCCCTCTAGAGATATGGCCAAATGAGTGTTAATAAAGGATAGAGAAACCCTCACCCCGAAGCTAGCTTT TGGGTTAGAGTTCGGCCTAACCCAAATTCTAATAGCTTCTAAAGAAGTATTATTTTCAATATGCTTTATATTTATATGTA AAAAAAAAAATTTTTGATAGGCAAATGTTAGTGGTTAGTTGTTAGTAAGTTAGAAAATCCCTACAAATTTCCCTTCCAGG ATTCGAACCCTACACCTTCCCCTCCCCAACCCTTATGTCTCCTAGCTCTTACCACTTGAGCTAACCCTCGGGGACATATA TGTAAAACTTTATTCTGCTTTTTTCCCATGCTTTCTCAAGTAGAATTTGTATGAATATGGTTCTCATGTCTGCCACTTTA TCTACTAAAATTCTGAAGTAGTTACTCTGTTTATCATCAAACAGGTACTGAATTCGTCCAGTTACCATGCAAGCATTTTT TTTGCCGCAAGTGTTTGCAGACCTTTACGCAGATACATGTAAAAGAAGGCACTGTTGGTAATCTTGAATGTCTTGATGCA AAATGTAAGGTTATGATTCCACCTGGCCTCTTAAAGCACCTACTGGCTGATGAAGATTATGAACGCTGGGAATCCATGAT GTTGGAGAAAACACTTGCGTCAATGTCTGATGTTGTTCATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGACC ATCATGCTCAATGCCCTCAGTGCTTTTTTAGCTTCTGTACCCTTTGTAGGGAACGGCGGCATGTTGGCATAGCATGCATG ACGCTGGAGATGAAGATTCAGATTTTGAAAGTAAGTGGACTCAATATTGGATAAATAGTTTAGCTGGTTGTTTTATGCTC CCTCTACCATAGAGCTTCTTTTATTTTGGAGGAAGTTTTAATGACCAGCTCTATCTCTATTCTTTGATTGTTCTATTACT TGTTTGTAAGTTTTAAGAGTTGCAAATAAACAGCATAAAAAGAAAATTCTGCAAAGAGTACTCTTAACTTTTTTTTTTCT ATCTATTGAACTTACCTTTAGAACTTCAGTAGGTGTTCTATGTTTTTCCTCATACACCAATTTTGTAAAAACGGCTTTGG GTGTTTTGTTGATTAATCTCCATTTATGTACTCAACGGTCAATGCTTTTCCTTACATCAACCATGTAACTTTAGGATGGT CCAGCAGTTGCACACTTGTATTTGTTGGATTTTCTTCATTGCTATCCAGCAATGTGGTAAATAGTTTGAATTGCTTGCAT GTCTTATGTTGTAGTTTCCTGGCCCTTAATCGTTTTGATGTGAGTTCTCAGTTGCTAACCGGAAAAAATGTTTCCAGTTT TCTGATTTTTGAACTTCTTGTAGGACCGTCAAAATTTATCTCAATTAAAGGGTGATCAAAAGCGTAAGGAACTTGAAATG ATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTTTGCCCTTCATGTGACATGGCAATTTCTCGAAC TGAAGGTTGCAACAAAATGAAGTGCGGTAATTGTGGACAGTACTTCTGTTACCGCTGCAACAAAGCAATTGATGAAACAG ATCCATATGGACATTTCAGGTATATGGCTCCTCAAAAGCACCTAAAGTTCTTTTGCAAGTTTGGTGTCTCTATGAATCCA ATTTCTAGAATTCTTTGAGAACTTACCTTTTTTTCATTCAAGGGATGGATCATGTGAATTATTCCCTCGCGAGATGATTG ATGCCTGGCAAGAGAACTTAAATGCTCGCCAATTAGTAGGACAAGTACAAGCTGAACTCTTCCCTCAACGTGGCACAGCA TGTCCTAGTTGTCGACAATTTAATGCAAAGGTGTGTAAACCTTTCATTTTATTTTGTACATAATATGACTTAAAATTTCT ATTTTTAGACCAAATTAAATGGATTTAATGATTACTGAGTTACTGGATTCACAGAGACACAGTTGGATTGTTTGAGATTA TGTAATTGATTAGCCTGTGATGAATTCCATCTATTTTCGTATCTGCTAAAGAAGTGACCTTCCAGTTTTATATGTATTTA TATATTTTGGAATACCTAAGTACCGGACACAAACCAGCAAGTCACACTTTGTGCATTATACTTTAATATACTTCTTTTTT ACCTTCATTTAAGCTAGATCTGCTGTTGCTTAAAGAATCATCTGTGTCAATTTTATATTCAACTTGTCATCCTTTTGCAT CTCCAATGAAGGCTTTTTATTTGATGATTAGGAAGTTTAGAACTTATGATCTCATAAATACAAATTAAGCCTGTTACCAC TAGTGAAAGGGTTTATAGTTCCAATCCACTATTTGAAAACTTCTATTTTGGAATAAACTAGTCTGCTTGTATCTGTTGGA AGACATTTCAGCTGTCATCTCTAACTACTTTCATTTCTGTCATTTTGATTTCATCACACAGATTGGAAATAACAATCACA TGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTATGCAATGAGGTTGTCAGGCGCGGCACTAAGCACTATGGACCG AAAGGCTGCAAGCAGCACAGTGAGGGATAGTATACCGATAAGTACAATGCCTTATACAAGAGTAGAAATGTAACATTGAA TTTTTCTTTCTGTTTGATCATTTTTGGCAATATGAAATGTATCAGTTTCATTAGAATATACCAGATTGGTGAAGCCACCA TGATTGAACGCAAAGGTGAAAACCATTTAGTACTTGTCCAGTGAGTGTATGAATAGGTATAAGGTTTGTTGCTATTGCGA TCAAATAGAAGAGGTAGAGAATCAATAAGGTTTTTGTTGTACAACTCTGTCAAAAGCATTGTCCCCTTACGTTTGCTATT CCGAAATCCCTCTATAATTGATTTCGTTTTTCTTCCGAAACTTAAACTCTAAGAAGTGTAAGAAAAGTTCTGGGAAAAAA AATCAGCTATGGAACTTGGAGCTTTGAAGGGGCAATTCAACTAGTATAATTTTGATCTTTTGGAACGCCAAGTTTTGAAA TTGAAATTTGTTTTCTTCCAAAGTTCAAGCTCTGTTAGTGGCAAAAGAAATCATTCGATAACTTTGAGCTTTGAATGTGT ATATCTACTTGTATAATTTTACTTCTGAAACTCAAAGCTGAATTATTGAAATCAAGGTATAATAGGTTAGTTTTTATAGT TGAGATCAACCACGAACAATGACTAATCTTCTCATCACGGATACTCGTGCACTAAATGGTGAACCATAAAATGTGTTTTA TTTATAATTTTTTTTA
CDS sequence (LotjaGi2g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGAAACCACCATCAATCCTCCACTGCTAACAATCGAGGACGACCGCAACAGTATCGCCCCAAATTCACATCCCG CTATGTCACCAAATCCCAACTCGTTCCTCCTCCTCCTGCTCCCAACTCTGTGGCGGCGGAACAAGCTGCACCTGATGATG ACCATGTTGGGAAAAATCACCACAAAGGTGCATCAGAGTCAGAGCTGAACGGTAGCAACATTGATGAGACGAATCACGTA GCTGGTCCAAGCGAGGCCAACCAAGAAGATGATGATATCAATGATCTCATGGGGAGGCTTGATAAGTTGCTCACTGAAAT TGATCAACCTGGTGAATTGTCCGAGGACCAGATCGCTATCAATGACCAATTGCAGCAAGATGAGTTGCTAGTGGTGGAGT CAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGGCCTTCGTTGTTTTCAGATACACATATGCATTGATATT TTGGGCGAAATTGCAATTATCGCTAAGCTGAACTCTTCTAATGATCTTGAGACTGTAAGCAGTAATTCAGATGACTTCTT GTACTCTTTCAAAGTCCGGTATCTTCCACCTATTGTATTGACATGTTTATTACCTAAGTCATACCCAAGCCACCAACCAC CTATATTTACAATCTCTGTCAAGTGGTTGGAACCCTTAAAGATTTTAAGTTTATGTTCTGAGTTGGACTCAATATGGGAA GAGCAGCAAGGGCAGGAAGTAATTTACCATTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTGGGATTTGATAA GGAGATTACACTAGGTCCTTGTGACGTCAATCGTGTTGTAGACAAGCGGGTGGTTTCAGGAACCAAAAGCATTGATCTTG ATATTCCTTTTTTACGAAGTTATAACAATGAGAAACACCATGAGAACTTCCTAAAAGAATTGCATGAATGTTGCATATGC TACAGTGAATATCCAGGTACTGAATTCGTCCAGTTACCATGCAAGCATTTTTTTTGCCGCAAGTGTTTGCAGACCTTTAC GCAGATACATGTAAAAGAAGGCACTGTTGGTAATCTTGAATGTCTTGATGCAAAATGTAAGGTTATGATTCCACCTGGCC TCTTAAAGCACCTACTGGCTGATGAAGATTATGAACGCTGGGAATCCATGATGTTGGAGAAAACACTTGCGTCAATGTCT GATGTTGTTCATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGACCATCATGCTCAATGCCCTCAGTGCTTTTT TAGCTTCTGTACCCTTTGTAGGGAACGGCGGCATGTTGGCATAGCATGCATGACGCTGGAGATGAAGATTCAGATTTTGA AAGACCGTCAAAATTTATCTCAATTAAAGGGTGATCAAAAGCGTAAGGAACTTGAAATGATCAATGAAATGCTCAGTATG AAAGAAATTCATCGTGATTCCAAGCTTTGCCCTTCATGTGACATGGCAATTTCTCGAACTGAAGGTTGCAACAAAATGAA GTGCGGTAATTGTGGACAGTACTTCTGTTACCGCTGCAACAAAGCAATTGATGAAACAGATCCATATGGACATTTCAGGG ATGGATCATGTGAATTATTCCCTCGCGAGATGATTGATGCCTGGCAAGAGAACTTAAATGCTCGCCAATTAGTAGGACAA GTACAAGCTGAACTCTTCCCTCAACGTGGCACAGCATGTCCTAGTTGTCGACAATTTAATGCAAAGATTGGAAATAACAA TCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTATGCAATGAGGTTGTCAGGCGCGGCACTAAGCACTATG GACCGAAAGGCTGCAAGCAGCACAGTGAGGGATAG
Protein sequence (LotjaGi2g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRNHHQSSTANNRGRPQQYRPKFTSRYVTKSQLVPPPPAPNSVAAEQAAPDDDHVGKNHHKGASESELNGSNIDETNHV AGPSEANQEDDDINDLMGRLDKLLTEIDQPGELSEDQIAINDQLQQDELLVVESIYGENVFSLERWKGLRCFQIHICIDI LGEIAIIAKLNSSNDLETVSSNSDDFLYSFKVRYLPPIVLTCLLPKSYPSHQPPIFTISVKWLEPLKILSLCSELDSIWE EQQGQEVIYHWVEWLHGSSLSHLGFDKEITLGPCDVNRVVDKRVVSGTKSIDLDIPFLRSYNNEKHHENFLKELHECCIC YSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTVGNLECLDAKCKVMIPPGLLKHLLADEDYERWESMMLEKTLASMS DVVHCPRCETPCIEDEDHHAQCPQCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSM KEIHRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRDGSCELFPREMIDAWQENLNARQLVGQ VQAELFPQRGTACPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEVVRRGTKHYGPKGCKQHSEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 92 | 92 | - | – | |
| MobiDBLite | 10 | 32 | 23 | - | – | |
| MobiDBLite | 51 | 65 | 15 | - | – | |
| MobiDBLite | 66 | 84 | 19 | - | – | |
| Coils | 86 | 106 | 21 | - | – | |
| PANTHER | 109 | 621 | 513 | 9.6E-135 | – | |
| PANTHER | 109 | 621 | 513 | 9.6E-135 | ||
| Gene3D | 114 | 261 | 148 | 3.8E-25 | ||
| SUPERFAMILY | 121 | 256 | 136 | 1.92E-18 | ||
| Pfam | 123 | 256 | 134 | 1.4E-23 | ||
| ProSiteProfiles | 127 | 262 | 136 | 15.327 | ||
| SMART | 127 | 262 | 136 | 3.5E-25 | ||
| Gene3D | 312 | 400 | 89 | 1.4E-18 | ||
| SUPERFAMILY | 312 | 396 | 85 | 3.89E-17 | – | |
| ProSiteProfiles | 313 | 543 | 231 | 27.09 | – | |
| SMART | 317 | 364 | 48 | 0.019 | ||
| ProSiteProfiles | 317 | 361 | 45 | 9.494 | ||
| ProSitePatterns | 334 | 343 | 10 | - | ||
| SUPERFAMILY | 385 | 447 | 63 | 7.77E-10 | – | |
| SMART | 385 | 443 | 59 | 3.7E-10 | ||
| Pfam | 385 | 443 | 59 | 7.8E-10 | ||
| SMART | 405 | 493 | 89 | 12.0 | ||
| Gene3D | 463 | 557 | 95 | 7.6E-11 | – | |
| SMART | 472 | 537 | 66 | 3.2E-4 | ||
| SUPERFAMILY | 477 | 533 | 57 | 2.83E-13 | – | |
| Pfam | 481 | 523 | 43 | 1.9E-7 | ||
| SUPERFAMILY | 569 | 621 | 53 | 1.2E-8 | – | |
| SMART | 573 | 602 | 30 | 1.6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi2g1v0335000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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