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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410300 |
| Transcript ID | LotjaGi2g1v0410300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90714664..90719315) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGACGGCAAACTAACGGAAGGATCGAATCTGCACATTTTGAAACATGAGGGAGCGAATCTGCTCCTTTTAAACATG GGGGAGGAACTTCGCACAACGGTGAAACATGAGGGAGGAAAACTGCAATTAAGCCTTCTTATTATTGTTTTAATCTCCGT CCATTCAATTGAGAACCTCATTGATCTTTTCTAGGGTTAGGGTTTCCGTAGACTCGTTCCAAGAATGAAAAAGAGAAGAA GCATTTTCAGAAATTGAGTGGATCCTTTTACAATTTTCCAACAACATTTTCAACCTTCAATTCGATTTCTCCCAAATTCG CACCTTCACCCTCTGTTTCTCTAATGCCAAGTTTACCACCAACTCTTTTCTAAATCCTCATCCTTTTTCCCCCAATTCAA ACAAATTTGAGGTCAGTATGCAGCATGATTATGATTTATTCATCGCTGATTATTATTTTCTCTGCGTTTCTATTATACAA CTCAAGTATTGCTAATTGTGCATGTATGTGTTTGTGTTAAATCTGAAACTGCAACAACAACAACATAAGTGGTTTTGTTT TTTTACAATTCTGAATGATGCAATAATTCATGGGTAATTGCATGCTGTTGTTAATGTTATGAGGTAGAATCGATTTACGT TTAGATGCAAATAGGTAGTATTTGTTTGTGTAACAAGGCTTGACCTAATTGCATTGGCATTACAACAATACTGACTTGAT GATTCTCACACTTTTATTACACACTTTGCCAGATGAATAACATAAAAGATGGTTGCTGGATTTTCCCGAGCTGTGTTGTC TCTTGTCAAACATTGGATGTATAGTAAATGAAGTTAATTTGGAATTTGAGGTATTGTTTGATGATCACGATGGATTTTTT TCCTTTTTTGTTTGTGGGGGGATCCGGATTGTTTAAATTCATTGAAGGATGAAGTGTGTTTAGATATTGCATTTTTATTA AATATTTATCATTTTCATGCTGATGTTTGTAGGTGAATAGTAGTCCGATATTTCTGGTTTGTTGATGGACATGCAAAAGA GGGCTGCACTGGACTTCTTAGTTTTCCTTTAAAGTAAAGCAAAAACTAAACTGTCATAAAGAGGTTGTGGACTTCTTTTA ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAA ATGGCGCACCATACTTACAGACCCAGAGTACAGTGCTGTTTTGCGCATGCGTTCTAATGTAGATCTCAAGGTAAGTAATT TCAATACCCTAGCAGTTTGTGGGAAGTCTCACATTACTACAACTGCACTTGCTGAATGGCCATCTGTTTATCTCATCATA ACAAATAATGCTGAGTTCTTTATTAAAAGTTGTCAAATTATATGGTATAGCAAGGTGTATTTGCATATAACTATGTATTA CTTAAACTGTGAACAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAAGCAAAGCTTGCAA AGAACCTACCAGCCCCCAAACTTGTGAATAACCACACAGCTTTGAGTACCATAGTTCAACATGAAGATGATGCGAATACC AAGCCTCTTGCAGTTTCTGGTGGAACAACTCCTAATTCTAAAGAGCAAATATCAAGGTTATGGAACTTCAAGCTAAATAT ATCTTCCATTTAATCTACTCTTTGGAGAAAATAATTGTTTTGTGGTTCTTGGTTGCTTGAATCTTGTTCATAATAGCATA TGAACAAACATTGTAGAATTGTAGGGCATTTACTTCTGTTGAAAGTAATTAGTTCTAAGATCTCATAGAGCAATGTGCTA GTGTCCCCCGATTTTTTATGAATAAAGAACTAAACCAAGTTGTGAGCAAGTTGCAACTTATACTCTTTTTTTCCATGCAA ATGAAGGATATTACATTCTGATTCTGTATTATTTACTGAATTCCTTGATCAATCTGCTCCTAGCATAGCAAAGATACAAT AAAAATATGATTCAGTTCCCAGTATATAGGTTTTGATTGCAGTTAAAAATAATTGACAAATTGTTTTCTTCTGTTGTCAC TTCTGATGACAACATTCCACCAAACTTGTGGTGACTTTGTTGAAACTGTGGTGATTTATGTGTCAATGCTTTTCAATGAC AGTAACAGTATGCTTTTTAATAATGGCAGGTTGGATAATCTTATATTAGATTCTATCATCAGGTTGAAGGAGCCCAAGGG TTCTGACCGAGCTGCCATTGCTGCTTATATAGAGGTCTTTATACTTCAATTTCTGCATTTACGGTTTATACAATCTAAAC ATCTCAATAAACAAATGATGATCAAAATGTTGCTCCATGTAAAATTTAATGCTCCAACTATTATTTAATTTTTGCTTTTG CGGGCTTCTTATTTTCAAGTTAATTTAATTGGTTCACATCATGAATTGCACAGTAGAATATCTTCCTGTATTCCTCATCT ATCTGATTATCTCCCTTTAAATATATACATTCTATATTCATGATGTGCGTGCCAGATTGGTTTGTGAACAGTTTACAACA TTAAACTGTTCGTAAGTGTTTCTTTCCTAGGTACCTAGATTTATATGTTAGTTATTAATTGCCAGAACTTTCAACTACCT CCAAGATGTAGACTTCCTTTCTGCTAGGTATAAAACGATCCTGGCATTTTTTTTTTCATTTAAATGTTTCTTTTGTCAAG CGGCCTTCGCAGGTGCTCTCACCTGGCAAGCAACAGGATGTTTTAGAAATGCTCAGCATATTCAACCAGTCATAATATGT TATCTATCCCTTGTCTATTTAAGTATCCTTATAAGCTTAGCATTGATGAATACTGAGAGTACTAGCTAGCAAGTTTCAAG TAGCAACTTAATTTTTTATTTTCATGCTTCTCCTTACCATTGCATCAGAAGTAATGCTGAAACTTTTTTTCTCAATAGGA TCAATACTGGTCTCCGTCGAACCTCAGAACGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATTA AGGTAATTTTACTGTTAGTTAGTTCCTTAGCAACACACGTTGAACTTGCCTTCATGTAACTTAGTTCCTGAGAAGCGACA GGCAGCATATTCACCCACAAATCCGTGTGATTAACCACAGTCAATCTGGAGAATTTTTGGATCATGTTTGACCCTGATAC TTTGTTAACTACATGTTTTGTGTTACTGGAGAATTAATTGGTTTCATGTTCACATGTAAATAGAAATATGTTCTCTTGTG GCAGTTGAACTCCGCATATCTGGGCATTTTCTTAAGTGGGAATGAAGATTCTGTTTTCTCCCATCTAATAGTATTACTTT AAGGCAAATATTGTGCATGCAATTAATTTAATATCTGGTTGATTGATCCTGAGTGCAATATGTCTAATGACAGATAAAGC ATAAGTACAGGATTGCAACAAATTCAACTATATCTGAGAAACAAAGATGCTCTTCCTTGTTGCTTTTGGATGGGAGGCCC AAAGATTCCCCAAAAGCAGAGAAGTCTAATAATATCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGCAAGGGG CGTGGTGGCAGCTCAAGAAGCAGCAGCAGCTGCAGCAAAAGCAGTTGCAGAGGCAGAAGCTGCGATTGCTGAGGCTGAGG CAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGCAGGCCCGAGTGTTTGCAAAAGCACTAACGAAGGCACTA AAATGCAGAACGCTTCATATTTGGTAAGCTTCCTTAACAAGAAAATTAATGAATGCTGATAGCTGTGTATGCTTTCTGCA AGTGGTTACTCATCCCAATTTCTTACCTAGCCGATTTCTTAATTTTTTTACAATGTCTACTCTGCAGCTCTATTCCATCA CCATCATTTCCTAATGCACCTATCCAATTGTTCCAGAACTACTCGTGACAAAATCTACAGTTAAAAATTCTTTTCACTCT TATAGTTAGTTTCTATTCACTGTTGACAAACCCCCCCCCCCAAAAAAAATCCAATCTTCTCGTCATAAGACTCCAGTTGT GTTTATTACTTCTGGTGAAAGGTTTTCTGCAAACTTTTAACTAGTGCAAGTGTATTCTGATTCCTCAAAAGAGAATTGGT TCGTTAGTCATTTTAGCTAATTGTTTTACCTGTTCAAATTTCTGCAGACGGTATCATCAGCTTGTGCATGGTTGTTGACA TGAGCAGTGTTTTGGCTTCAGGTGCTTCCTGAATGTATTTAAGTATTGTGCATAATTTAGGCTTGTAAATTAGGAAGGTG CGGCATCAATCCATGGAATATTTACTAGGAGTCAGTAAGTTCACCCACAAACTGAGAGAAGTCTGGTCACACCTCAACAA CCAGCAAACTTACACATTGATTTTTGTTATGATTTTCTGCCTCTTTTTGTTTCTGTTACCGTCTTTCTACATTTTGAGGT TACATTGTATTTCATCTTGTCATCTGTTATGAAAGTAAGTAATCATCATTAGAATCATACTGATCAGGGCTCCATAATAG AGTCAGCAGCAGGGGCTTATTCGATGAGTTGAAATGAAAATACCAGTTGAAGATCCTTGAAATCAAACCCAAATTGTTTC AAGACACTATTT
CDS sequence (LotjaGi2g1v0410300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAA ATGGCGCACCATACTTACAGACCCAGAGTACAGTGCTGTTTTGCGCATGCGTTCTAATGTAGATCTCAAGGACAAATGGA GGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAAGCAAAGCTTGCAAAGAACCTACCAGCCCCCAAACTTGTG AATAACCACACAGCTTTGAGTACCATAGTTCAACATGAAGATGATGCGAATACCAAGCCTCTTGCAGTTTCTGGTGGAAC AACTCCTAATTCTAAAGAGCAAATATCAAGGTTGGATAATCTTATATTAGATTCTATCATCAGGTTGAAGGAGCCCAAGG GTTCTGACCGAGCTGCCATTGCTGCTTATATAGAGGATCAATACTGGTCTCCGTCGAACCTCAGAACGTTACTGTCAACA AAACTGAAGCATATGGTGGCAAGTGGCAAATTAATTAAGATAAAGCATAAGTACAGGATTGCAACAAATTCAACTATATC TGAGAAACAAAGATGCTCTTCCTTGTTGCTTTTGGATGGGAGGCCCAAAGATTCCCCAAAAGCAGAGAAGTCTAATAATA TCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGCAAGGGGCGTGGTGGCAGCTCAAGAAGCAGCAGCAGCTGCA GCAAAAGCAGTTGCAGAGGCAGAAGCTGCGATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGA AGCAGAGCAGGCCCGAGTGTTTGCAAAAGCACTAACGAAGGCACTAAAATGCAGAACGCTTCATATTTGA
Protein sequence (LotjaGi2g1v0410300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEYSAVLRMRSNVDLKDKWRNINVTAIWGSRQKAKLAKNLPAPKLV NNHTALSTIVQHEDDANTKPLAVSGGTTPNSKEQISRLDNLILDSIIRLKEPKGSDRAAIAAYIEDQYWSPSNLRTLLST KLKHMVASGKLIKIKHKYRIATNSTISEKQRCSSLLLLDGRPKDSPKAEKSNNILSKSQIDAEISKARGVVAAQEAAAAA AKAVAEAEAAIAEAEAAAREAEAAEAEAEQARVFAKALTKALKCRTLHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 1.0E-134 | – | |
| ProSiteProfiles | 1 | 61 | 61 | 13.622 | ||
| PANTHER | 1 | 289 | 289 | 1.0E-134 | – | |
| SUPERFAMILY | 2 | 70 | 69 | 6.24E-15 | ||
| Gene3D | 2 | 60 | 59 | 9.0E-16 | – | |
| SMART | 4 | 59 | 56 | 3.2E-5 | ||
| Pfam | 5 | 56 | 52 | 5.5E-8 | ||
| CDD | 6 | 57 | 52 | 1.69342E-16 | – | |
| Gene3D | 110 | 191 | 82 | 3.9E-9 | ||
| SMART | 112 | 177 | 66 | 2.1E-13 | ||
| SUPERFAMILY | 113 | 191 | 79 | 3.75E-17 | ||
| ProSiteProfiles | 114 | 182 | 69 | 24.181 | ||
| Pfam | 119 | 176 | 58 | 2.9E-11 | ||
| Coils | 237 | 274 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0410300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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