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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0415100 |
| Transcript ID | LotjaGi2g1v0415100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91297334..91302453) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGGTGGCTGCTTCCGCTATATACTTCCTCAACCTCCGCGGAGATGTTCTCATCAATCGCCTCTATCGAGACGATGT CGGGTAACACATCTCTCTCCCCCTCTCTCTCTCTGAAGATCCTCAGTGATGAATTGAAATGAACCGCTGTTTGCACTCTC AATCACGACGTAACCTAATTTGATTTTATTTCTAAATATTTGTGAGCTCGAATTCTGGAATTTAAGCATGTTTGAACCAA AGCCTGTGTTTCAACTTCGAACAATTTTTTGGCCGTATGCAGAATATTTCACTCGTAATGCAGCTAGGACTTGTGATTGC TGAGTTTTTGCTATTAGAATGCTTCTTCATGAAACCCTAGAACCTTTTGATTGAGCTGTTAAAATTTCATTTATGTGTAC TCTAATTCATGGTTTTACAGGGGAAATATGGTTGATGCTTTTCGGACGCATATAATGCAAACCAAAGAACTCGGTACCTG TCCTGTGAAGCAGATTGGTGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATCGTCATTGTTGTCAGCAGCA ATGCTAATGTAGCTTGCGCTTTCAAGTTTGTTGTTGAGGTATTCAACCTTTAACTGCCATTGCCATTATCTGATGTGTAC TGCTTTAGTTCCATCCTTGCTCATATCGCTGAGAGGAAGGATCTGTTGTCTTGGTTACTTGTGCATGACTTTCTGGCTAC CAATTTTGTATTTTTTATTATAATTATCATTTACTTGGGATTGCATGAATGATTGTAGTTGATCATTTGTCCCTCTTTTT GATGCAGGCTGTTGCACTTTTCAAATCATATTTTGGCGGCTCTTTTGATGAGGATGCAATCCGCAATAATTTTGTACTCA TTTATGAGCTTCTAGATGGTATGTAAATTTACATGGTGATAAATTAAATCCCTATTAGTTCAACTTTTATATTTTTCTCT AAGGAAGGAATACCACCACTGGAAGTCAATGCTAAGGGCAATGTTTCCTATAACTTCAATACCTGGCATTAGTTAGAAAT CCATCATTACTTAGCAGAATATTTTCTAGCAGAGTTACTATTTCTGACCAAATTTCTTCAAGTGAAGAGTTAACTATGCG AAGTGGGTGCCTAGTGCCTAAACTGGAGAGGGAGATGCAAGAGCATTACAAAATATTTATATGATTTGAATTTGGTGGAA ATATGAAATACAACACACATGACGTAATTTATGAAACTGAGCTTTTAGTTAGGAAAACATAAAGAATCTTCTTGTAAACT AAGACAATTATTTATGGTGCAAAAGATCCAGGCTAATAAAGGTTAGCATACATTTTGTTTGTTGCTATTTTCATGCTTCT TGAAAACTATAAATTATGTGGTAATAATAGCTTGACCAAAATGATAGTTATATTTATATCTGCTCTTCAGAGTTTGATAG AAACTGCGATGGTTAAAATAAGTGCCAACCTAGGGCTTTGATTGTGAACTGTTATGGAGATGGTTGGTATGTTGGGCTTG TATGTGTGAAACTGCAGCTGCGCTCTTGCTTGATAACGTTTAGTAATCATCGAATGGGTTTATGATAAATGTTTACGACA AATATTTGCAGAAATCATGGACTTTGGCTATCCTCAAAATCTTTCACCGGAGATCTTAAAGCTTTATATCACTCAGGAAG GAGTCCGTTCCCCATTTTCATCAAAGGTTAGTGTGCACATGCTATTTGCAAATACCATGAAATAAGGACATAGACTTGAT AGGATGCAATCATGGGTATACTGACTTGAAAAAACTAGAAAATGGAATTTTGGAGAATAAAATATATGTAATTGCATGAA GATGTTAAGATACTTAATATCATTTTTTGTTTGTTTAGTCATATACATTTCACAATATGTTTTGTCTGTTGAATATTCCA TAATATTTCAATTCATATTATGATGTGTGCAATGATTGGGATACAGCCCGCAGATAGACCTGTTCCGAATGCGACTTTAC AAGTTACTGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGCGTACAAAAAGAATGAGGTGAGTTTAATACTATCTTACATC CACTCTATATGATTATTGCCACATACTATTACAAGTTTACAACATTGACCTGTTGCAGGTCTTCCTAGATATCGTGGAAA GTGTAAATCTTCTTATGTCTTCAAAAGGTGGGTTGTGTATTTTGATTTTCTTCATGTTGATGTTTGCAAGATTGCCTGCT AATTGTTCCATGGTTTTAGGTGTCGTTCTGCGTTGTGATGTGACGGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAAT GCCTGATTTGAAGTTGGGTTTGAATGATAAGATTGGTCTTGAGAAAGAGTCACAGATTAAATCCCGTCCTACAAAAAGGT AATTTGGACATGTTTTCCCTCCAATCGTACTTTCCTTTGACATAGTTGTTTGAAAGTATGTTTATGTTTCTCCTATCGTA GAAAATACTGGTGCTGTTCCTCCTGTATTTTTTCCTCTACTATTCTAGGAATAACGTTTCTATCATCAACATAATCTATT TTGCAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACGAGGTTCAACTCAGAGAAAA CTGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAGTGAGTTCTTGCTCTTGTATTCTATCTTGTTTTATCT AATTTCATGAATCTATACCAAGTATATCACATATTCACATGCATGCTTTGTCTGGAAAAGGGGCAGGTGGGTAGAAGGGT TTGTAATTACTCATGTTGCCCTTTGAACTAATTTTGAGTAACTTCCATAATCACTCTTTGTTGATTTTTCTACTTGGCAG TTGGCACTTGATAATCTATTTCTTAGTAGATCTCCATCATCAAGCTTTGATTTGGAAAATGGGCATCTCTATGCTATGAT TTAGGTCTTCTATAAAAGGGTTTTTTTCCCAGTTCCTTCTAAGAAACTCCAATAGGCCACCAAAAACAACATTGAACTCT AACTGAATTTGATAATATTGCTTACAAGTTCTAAGTGTCCATTTCTTCACTTTCTTTTCCACTTTTCCCTACCTAGCGTC CTAGCCTAAGAATTTAACTTATATGCTGTTACAGGTATTGTCATCAAAGTCTATTTTTTGTTCTTGCAGTTTGCAGTTTC CTTGAATACTAGTTTCATTTATTTAGATGGATGATTGTGCTCTCCATTGAACAAGGAAAGTTATAGGCTAAACCATTAAG AGAGATTTGGATTTAAATGATCTTTCATTAGACATGATTCATATAAGGGTATTATGGAGTTTTTTGATCCATGGACCAAC TCCACCTGGTGGGAAAATGCTATGGTTGTTATTATTTTTGTGATGCTCTCTTTGTTATTAGATTAGTTTCTTCATTTTAT GATGTTTGTGGCATGCAAATGATAGTCTCCTCCTACAGTGTTAGCATGACTTCAAATCTTATTTTGTCGTTTCAACTTTC AAGAAGTCTATTTTACCATTTTGTATCACTTGGTTTTTAAAAAATTACAATAGCATCAGGTCAATTCTTAATGGTGCCAT GGTTTGTCTGATGCCTGCTAAATTTATTTTATAATTATATTGGTAGGTATCGTATCACTGAAGGTGTTAATCTTCCCTTC AAAGTTTTGCCTACCATCAAGGAACTAGGCCGAACACGGATGGAAGTAAATGTTAAGGTTTGAAATTTTTCACGTTGAAG GTCATATAATTTATCTATCATCCATTTGTTTTTTTATTTATTTTTAACATGTTTTTCAGGTAAAGAGTGTCTTTGGTGCA AAGATGTTTGCACTAGGGGTTGTTGTCAAAATTCCTGTGCCAAAACAAACAGCAAAAACGAATTTCACAGTCACATCTGG CCGTGCGAAATATAATGCATCTATTGATTGTTTGGTTTGGAAGTAAGTATCTCACAATATTATGATTACTATGTGAAATA AAGGTTATGGAAAATGGGTTTCAGGTACACACTCAAAAAGGATCTTGACTCTTGAGCAAAATATTAAGTGTTTTCTGTCA CACTCACGAAAGAATTGGCTCTAGTTAAACATTAAGATGTATGCTTTTACTTGGTAATTTTATATTTTGATACATGTACA TCATATGTCATTTATGCGTTATTATTTTTCACTTTTAGCCTAAGAGACTTCTCTTTCGGTTATCTTCAAATGGTATTTTT ATGAATGAATTGTTACTCTCCCTTTCCAGCCTTCCCCGGTTTTTCTATTGGTACTCTTGCGTTTTTCCCTTGAGTACCTT ACTAATATCCAATTTCATTTTTAATTTGCAGGATAAGAAAATTTCCTGGGCAAACTGAGCCTACCTTGAGTGCAGAAGTT GAGCTTATTTCCACGATGACAGAAAAGAAATCTTGGACTAGGCCACCAATTCAGATGGAGTTTCAGGTTTGTTATCAGTT ACTTTAACTAGATCCACAGTTACTTTAACTAGATCCATGAAAATTGGCTGGAACTTTCTGATCCCTGTTAAAGTATTTGT GAAAGCTTATTCATAAAAATTTAGGATATGTAATTGATCTAGCTTAGTTTAATGTCCAACTTTGATGTATATACGTTAAA TAGGGAGATTTGGAGATAGGACATGTGTATTCATTATTAGTTTGATATATGCAGTTGTCTCTAGTGTACATTGTAGCATA TGTGCTTCTTTTCTCTCTCAAAACAAAACAAAAACTTCTTAGCTCCCTATTTTCTTTTGGTAATCTCTGTGGATGTTGTC GCTCTGCTGTGAGCCAAACTTTTGAAGTATATATCACATTCACCTATCATGTCTTCACAAATTTCCTTTCATTTACTTAC ATAGTAGCTTGATCTACTTGTGTGATATTTGTTAATGCAGGTTCCCATGTTCACGGCATCTGGTTTACGTGTTCGTTTCC TGAAGGTATCACGCTCTTACTTTTTTTCCTTTTCTGCATCTGTTTAAAACTCGTTTTTATATAATTTACTCTTTTGAAGG TCTGGGAGAAGAGCGGATACAACACCGTGGAGTGGGTTCGTTATATTACAAAAGCAGGATCATATGAGATTAGGTGCTAG
CDS sequence (LotjaGi2g1v0415100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGTGGCTGCTTCCGCTATATACTTCCTCAACCTCCGCGGAGATGTTCTCATCAATCGCCTCTATCGAGACGATGT CGGGGGAAATATGGTTGATGCTTTTCGGACGCATATAATGCAAACCAAAGAACTCGGTACCTGTCCTGTGAAGCAGATTG GTGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATCGTCATTGTTGTCAGCAGCAATGCTAATGTAGCTTGC GCTTTCAAGTTTGTTGTTGAGTTCCATCCTTGCTCATATCTTGATCATTTGTCCCTCTTTTTGATGCAGGCTGTTGCACT TTTCAAATCATATTTTGGCGGCTCTTTTGATGAGGATGCAATCCGCAATAATTTTGTACTCATTTATGAGCTTCTAGATG AAATCATGGACTTTGGCTATCCTCAAAATCTTTCACCGGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTCCGTTCC CCATTTTCATCAAAGCCCGCAGATAGACCTGTTCCGAATGCGACTTTACAAGTTACTGGTGCTGTTGGTTGGCGGAGAGA AGGCCTTGCGTACAAAAAGAATGAGGTCTTCCTAGATATCGTGGAAAGTGTAAATCTTCTTATGTCTTCAAAAGGTGTCG TTCTGCGTTGTGATGTGACGGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAAT GATAAGATTGGTCTTGAGAAAGAGTCACAGATTAAATCCCGTCCTACAAAAAGTGGTAAAACTATTGAGCTTGATGATGT CACTTTCCATCAATGTGTAAATTTGACGAGGTTCAACTCAGAGAAAACTGTTAGTTTTGTGCCACCTGATGGTGAATTTG AACTAATGAAGTATCGTATCACTGAAGGTGTTAATCTTCCCTTCAAAGTTTTGCCTACCATCAAGGAACTAGGCCGAACA CGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCAAAGATGTTTGCACTAGGGGTTGTTGTCAAAATTCCTGT GCCAAAACAAACAGCAAAAACGAATTTCACAGTCACATCTGGCCGTGCGAAATATAATGCATCTATTGATTGTTTGGTTT GGAAGATAAGAAAATTTCCTGGGCAAACTGAGCCTACCTTGAGTGCAGAAGTTGAGCTTATTTCCACGATGACAGAAAAG AAATCTTGGACTAGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGTGTTCGTTTCCT GAAGGTCTGGGAGAAGAGCGGATACAACACCGTGGAGTGGGTTCGTTATATTACAAAAGCAGGATCATATGAGATTAGGT GCTAG
Protein sequence (LotjaGi2g1v0415100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVKQIGGCSFFYMRISNVYIVIVVSSNANVAC AFKFVVEFHPCSYLDHLSLFLMQAVALFKSYFGGSFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRS PFSSKPADRPVPNATLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKILMKCFLSGMPDLKLGLN DKIGLEKESQIKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRT RMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFTVTSGRAKYNASIDCLVWKIRKFPGQTEPTLSAEVELISTMTEK KSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 454 | 451 | 6.1E-127 | ||
| PANTHER | 4 | 454 | 451 | 6.8E-284 | – | |
| PANTHER | 4 | 454 | 451 | 6.8E-284 | – | |
| Gene3D | 5 | 161 | 157 | 3.3E-40 | – | |
| SUPERFAMILY | 6 | 158 | 153 | 5.49E-30 | ||
| CDD | 6 | 160 | 155 | 2.61945E-70 | – | |
| PRINTS | 15 | 35 | 21 | 1.3E-46 | ||
| ProSitePatterns | 182 | 202 | 21 | - | ||
| SUPERFAMILY | 182 | 453 | 272 | 3.01E-96 | ||
| Pfam | 183 | 454 | 272 | 1.8E-87 | ||
| PRINTS | 184 | 212 | 29 | 1.3E-46 | ||
| Gene3D | 190 | 449 | 260 | 8.8E-101 | – | |
| CDD | 191 | 453 | 263 | 0.0 | ||
| ProSiteProfiles | 193 | 453 | 261 | 46.201 | ||
| PRINTS | 264 | 291 | 28 | 1.3E-46 | ||
| Gene3D | 306 | 453 | 148 | 8.8E-101 | – | |
| PRINTS | 333 | 348 | 16 | 1.3E-46 | ||
| PRINTS | 373 | 384 | 12 | 1.3E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi2g1v0415100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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