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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0430900 |
| Transcript ID | LotjaGi2g1v0430900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A0R0EH27|A0A0R0EH27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92785579..92791758) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAATGCTTTTTAGCCAAATCAAAATGAAGATCAACGACTCAGTG TTTAGATCCATAGAGGGCGTGCGGTGCTTCTCTCCCTTCTCCCAAAACCATCCACCTCTCTTTCTCTGCAACACGGCTTC AAAATGCCCAAGAAACCCTCAAAAAATTCCCTGCGAGAAGAAGGCCAATGCTTACAAGAAATCCGATCACTCAGCCCCAT TTTTGCCAGCGCATCCGCTTCAGCCTCTGTTACCTCTCTTTCTCTGCACCTCCCACTCCCTATGAATCAGTGACCATAAC TCGTCCACAAGCACAAGGCAAGCCATGTAAGAATGAAGGTTCATGACAATCCCCTGGTGTTTGCGAACATGAAAGAAAAG AGCAAGGACCAGTGGCGGTGCTGGAATCAGAGGTAAGAAGAGTAAAGTACTGTATGGGATAATTTAGTAAATTAACATTT GAATCTCACTCAATCTCAATCTCAGCTGTTCAATTTTAAATCAATATATCCAGTGGCTATTTTTAAACTGGACCAACACC TTTTCTTTCAACTTTCTCTGTAGAGAATATCTAAGCTTAGATCTTCTTGTTTATTTGCTCCCTGTGGGCTTGGCCCGTTT TCTCTCTCGTCTCGATATATAATTGTAAATGCACTCAATTGCGAACGAAACCTCAATTTCCAACCCAATGAATCTCCTAC TCAGCCGCACCGTCCTCAAAACCTTACGCCGCCAGATGATGGTCCCAAACGGCACCGTCATGATCCGCGGCTTCGCCGGC GCTGGAAACTTACAAACAGAATCAAACAAGGCGGGGGAAGCAGGGTTGTGGAAAGCAACAACCACTCAGAAGCCAAATTC GGTTTCTTTCAATGCAGCTATTCAGAGATTCTGCGCGGAAGGGAGGATAACAGAGGCTGAAGAGGTGCTTCAGGAGATGA ATCGGAAGGGTTTGGCCCCTGATGAGACTACTTACACGTCTCTCATTCATTTGTTCACCAAATACCAGGTATATAAGGTT CATAAGGTTATGTGTGACATGATTTTTAGTGGTTTTTTGCCTTCGGTTGCTACCTACAACGACCTTGTTCTTGCGTATTG CCGTGTTGGGTCGGTTGATCAGGCCTTACGGGTTTTGAGGGACATGGTCGACAAGGGTGTGGACCCAAATTTGGTTTCAT TCAATGCTGTTCTTGAGGTTTTGTCCCGGCAACACAGGTGGGAAGATTCTGAGCCGCTGGTTGAGGAGATGCATCGGAGG GGTTTGGCCCCTCATGAGACCACTTACAAGTCTCTGATTATAAACCACTGCAACAAATGGCAGGTAGATGACGCTTATAA GCTTTTGAGTCAAATGATTGCTAGTGGCTTTTCACCCTCGGTTGCTATATACAACCACCTTGTTCGTGCATATTGCATTG AGGACAGGGTTGAGGAGGCTGTAAGGATTTTCAGGGGCATGGCTGAGAGAGGTTTGTCACCTGATGCTGAAAGTTATAAC ACTCTAATTACTAAGTTTTGCGAAGACAAGGAGCTGGAAAAGGCCATTGAAATGAAGACTGAGATGGTTGAGAAGGGCAT CTTGCCTGATGCCATCACATTTTCGTCGCTTATACAGGCCCTGTGCCCGCAGCGAAGACTGTCTCAAGCTTTTGATCTCT TCCAAGAGATGCTGCGCGGGGGTGTGTTGCCAGGTCAGCTTACTTATCATTGTTTGATCAACGCTTATTGTCTTGAAGGT GATTTCAGTATGGCTTTTATCTTGCATGATGAAATGATACACAAGGGTTTATTGTCTGATTCTGTTACTGGGTTTTCACC GTCTCTTGTTACTTACAACGCCCTTATTCATGGGTATTGCTCTTTGGGGAGGGTTGAGGAGGCTCTCGGGATTTTGAGGG GCATGGCTGAGATGGACTTGTCCCCTGATGCCGTTAGTTATAACATTGTTATTTCCGGATTTTGCAAACTCAAGGAGCTG GGGAAGGCGTATGGTTTGAAGGTGGAGCAGGATGAAAGGCCCTATATCTGGGGGTGTTGTGATAGATTGTCTTCATCACT TATGGAAAGCCTGTCGGATGAGGTTACTTATACTAGTGTGATCAATGATTATTGTGCTGAAGGTGAAGTGTGTAAGGCTC TTATATTGACTGATGAAATGAGTAAAATGAGTCGCTACGAGGGGGGTCATTTGCGAACATCTTTTCTCGATTATGTACTT ATGAATGGGCTTGATAAGAAAGCTAGAACAAGTGCTGCTAAGAAGTCCCTTCTGGGGTTGTTTTATGGTTGGTGTACTAG ACCGCCAGCTTTCATATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTATGATAGAGCTTGCCAAAA GTTTCTGGATGAGGGGTTTAAAGAACGAAGCAGCCAGTGTTTTCAACACAGTACTTCAATGGAATTATAAGCCAGATGGA GCAGTTTACAATTTATTTATTGTTGAACACTCTACGCGTCTTAATGTTGATAAGGCATATAATATGTACATGGAGATGGT ACATTATGGTTTTGCTTCTCATATGTTCTCTGTACTTGCTCTTATTCCAGCTTTATTTCGTGTTGAAAGGCACAATGAGA TAAGGACGGTCATTGAAAACGTATTGAGGAGCTGTAATCTCAATGATTCTGAGCTACATAAAGCACTTGGTGAAACTGGC GACGACATCATGAAAGGTAAGATTGAAATTGAAGATGCTCTTTTGAATGTGCTAGCTAAAATAGCTATGGATGATGGCCT GCTACTTAATGGTGGAAAGTGTTCATATGCTCCAGCGATACCATAAACTTTAATTAAGTAGAAATAGTTTTGGGAAATGA GTAAGAGCCACTCGATGTTGGGAAATGAGTCCAATCAATGATCCAACTAATTCCTTTGCAATGCAATTTGTTCTTATTGA TTCTGAGGTTAGTGATGATAACCTATTCTTAACTTTTCAAATTCTATCTTATTATACTGTTGTGTTTTTCTTTGTAGCTT TTTTTTTACTGTCTCTTTTATAATGGTTATCATATTACACATTCATTGTCTTGCTGTAGTTGATTGAGTTAAATTGATTC ATATGTTTGCTGTAGTTGTATATTCCTCTATCATTTGTTTCGCAGATTTGATTTTTAGATCAATTCCAGTGTTTTGTCTA GAATCTCTATGCTTAGTAGATGTTAGTGAATAGTGCAATTCAGCCTACTAAATACCTCCACAAGCTTGTTTTGTCCAGCT CCCTAAGGTGCAGCTTCGCCTTCTCCTTCACTCCCACTCCTCATCCAGAACTATAGAAAGAAAGTGATTAATAGACAAAA GAGCGATTGATTTGATTGGACATATCATATTATACCGGGTTGGATCGATCAAGACCAGTTGCGGCAGTTGACCAATGAAC GTTAACACTCATGTGCTAATGCTATAGGTTCAGTAGTTTCCACCAATGGAGTTTTCATCTAGCCATAAGCTATTGATTAG TGAGTCATCACTGCAAATGTTATCCAGCAAAAGTGATTCTTCTCCAGAAGAACGTTCATCTGGGGATGATGAGTTAGAAT TCTCCTCTGAGTTGTTGAGAACCCCTTCAATTCCCCACTTGATTTGTCCTTACTGTACACATGAAATTACAGCATCTTAG AAAGAAAGCATGTAGTGTGGCCTAATTTGATGATGATTTTGTTTTGGTTTGCAATCACTTTTGTGATTTGGTTGGCATGG AACCTCGTAAGAGGAAGGTCCACCTTCCAAGAACATTTTCATCCTGTTTGGATACAGATGCACTTATTGCAGCTTATCTA CTAGGAAAAGCACTAAATAAGCTCTAATAAGTTATTTTTTGTCTGCAACCAAATAGGTTCCTTGTAGAATGCTACCTAAG ATAAAATTCAACACCAAGAACTAAAATTTGAGGTCATGGCATATTTTTGTCACATGTACAGATTTGACATCTTCCCCTGA TATTTAAAGACAAATTTCAATTCACAAGATGCACTGCATGCTAATTCTCCTCTTCTTTCATGTCCATAGTTTGCAATGCA CAAGAATCTACCTCATTAAAAGAGTCAAACCCAAAATCATGAATACCATAGTCCTCACAGTCAAATAGCCAAGCACAATT ATCCTCCCAAGATGGAATCAAACCCATGTCAATTTTAGTATTATCATGTGCTAATGCTATAGGTTCAGTAGTGTCCCATA ATGCTTCCACCAATGGAGTTTCATCTGGCCACAAGCTATTAATTAGTGAGTCATCACTGCAAATGCTATCCAGCAAAAGT GATTCTTCTCCAGAAGAGCTTTCATCTGGGGATGATGAGTTAGAATTCTCCTGAGTTGTTGAGAACCCCTTCAGTTTCCT TGATCTGAGGTTGTGGTGGAAATGGCTCTGCAGGGGTTGAAATTGAACTGTCCTTGGATGCAGCTTGTTTAGTGAGTGGT TCATGTGTAATTGGGTCAATACCAATCTTAAGGAGTTTCTTCTTGATGTCGGTGTTCCAGTGATTCTTAATCTCATTGTC TGTTCTTCCTGGTAACTTGGAAGCAATCTTGGACCACCTGACACAGCAAAAAGATATACATGTACTCATCAAATTAAACA TGTAATTGCTTTAGGTAATATTTTCAACTGAATTGTAACTACTGAGAATTTAATAGTATTCTTCAAAAAAGAAATATTAA ATTCAGCTCCTATTTAGTAACATTTTTGCTTAAACATTATTACACAATCCAGCATACAAATGCTTTTCAAATTTGCATGC CATTTGGACATTTGGTATGCATGTAGGAACACTTCATCTATAGTTTCCAGAGTAAATAGATGATAATTAAGAATACATGC TATTACTATCTTGAAATGCAAAAACATGTTTATGTATTACTCATTACTTGACCATTAAGTAAGCCTTGTTTACAAACACT GTTTTTGGATTGAGATCTTCTGTTTCATAACAGTAACTCATTCTTTGTCCCACTAATGAAATTTTATGTCCAGTAAAAAT GACTACATGAGTTCGTAACTGACTCACTCGTATTTTTTTTAGCAATATGAGATTGGTGGGACAGGAATTTGAGACAACAG TCGAGCAAACACAAGGCAATGCATACTTGTTGCCAAGACGGTTCACCAATTCATTGAATGTTTTCAGACACATGATTGGG TCGGTGATCCATTTATAAAGATCGTATTGGAATCCCTTTCAGTTTTACTGCGAGCCTATTTGGATTAAATCAATTATGTA CTCTACATCAGTGTCTCCGTTCCTCTTCTTTTGCAGATGTATCATATATTTCATTCTAAGTACACCAATATTCTTTAGTT GGCAGTGACTATTAATTGATTTATTTATGTTGTGTGTTATACTTTTGGTTGCTATAGTGAATAGTGATTACAGTTTGATT GATGCTATATTAGTTTTCATTTTGTATATATCTATGTGTTGTGGACACTTGTTTCTGATTTCTCTTATGTTTCATACTTG TCATTTAAGGTACATGACTATTCCACTTGGTTTTCAGTCCACTAAACCCAATCAAGTGTGAAAATCGCAAAAATCACTCT GGGTTAAAACTTAAAACAGGCCAGCAGGATGTGGATTTTTAATACTTTTGCATTGATTACCCTGGGCTTCACACTTATCT TCTGACCATTCTCTATTTGTGAAGCATACAGGTTGACATTTAACTATTCTTTTGGTTTATGTTGATAATGTTGTGTTAAA AGGAGACAATTTGTCTGAGATACAATGTGTGAAGCAGTATTTGGACCAGCAATTCAGCATCAAAGATCTTGATAGTTTGA AAAAATTCTAGGAAGCGTTAGATACAGCACAACCTTAGATTCAACTCATTGATCTCCTTGAAGTAGAACCAACATGGAGG CTAGAGTTTGAGAGCCTAGATTCAATGAATAGTAATGTAATCCAATTTCACCTTAGCTTTTAGCAATTTCCATGGTCTCA CCTACTAAAAAAACTGTAATTTTGTGATGGAATTATGTGATGGATTAAAATTTGTGGTGAATAGTGATGAAATTAGTGAC GCATTTAATACATAGGAAGTGAAATTTTTCTTTCCTTGTATTTATTTTCTTATAGGCTAGATGGAAAATATCATTTTATA AATGTTGTATGTAATCCTAT
CDS sequence (LotjaGi2g1v0430900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTCAATTGCGAACGAAACCTCAATTTCCAACCCAATGAATCTCCTACTCAGCCGCACCGTCCTCAAAACCTTACG CCGCCAGATGATGGTCCCAAACGGCACCGTCATGATCCGCGGCTTCGCCGGCGCTGGAAACTTACAAACAGAATCAAACA AGGCGGGGGAAGCAGGGTTGTGGAAAGCAACAACCACTCAGAAGCCAAATTCGGTTTCTTTCAATGCAGCTATTCAGAGA TTCTGCGCGGAAGGGAGGATAACAGAGGCTGAAGAGGTGCTTCAGGAGATGAATCGGAAGGGTTTGGCCCCTGATGAGAC TACTTACACGTCTCTCATTCATTTGTTCACCAAATACCAGGTATATAAGGTTCATAAGGTTATGTGTGACATGATTTTTA GTGGTTTTTTGCCTTCGGTTGCTACCTACAACGACCTTGTTCTTGCGTATTGCCGTGTTGGGTCGGTTGATCAGGCCTTA CGGGTTTTGAGGGACATGGTCGACAAGGGTGTGGACCCAAATTTGGTTTCATTCAATGCTGTTCTTGAGGTTTTGTCCCG GCAACACAGGTGGGAAGATTCTGAGCCGCTGGTTGAGGAGATGCATCGGAGGGGTTTGGCCCCTCATGAGACCACTTACA AGTCTCTGATTATAAACCACTGCAACAAATGGCAGGTAGATGACGCTTATAAGCTTTTGAGTCAAATGATTGCTAGTGGC TTTTCACCCTCGGTTGCTATATACAACCACCTTGTTCGTGCATATTGCATTGAGGACAGGGTTGAGGAGGCTGTAAGGAT TTTCAGGGGCATGGCTGAGAGAGGTTTGTCACCTGATGCTGAAAGTTATAACACTCTAATTACTAAGTTTTGCGAAGACA AGGAGCTGGAAAAGGCCATTGAAATGAAGACTGAGATGGTTGAGAAGGGCATCTTGCCTGATGCCATCACATTTTCGTCG CTTATACAGGCCCTGTGCCCGCAGCGAAGACTGTCTCAAGCTTTTGATCTCTTCCAAGAGATGCTGCGCGGGGGTGTGTT GCCAGGTCAGCTTACTTATCATTGTTTGATCAACGCTTATTGTCTTGAAGGTGATTTCAGTATGGCTTTTATCTTGCATG ATGAAATGATACACAAGGGTTTATTGTCTGATTCTGTTACTGGGTTTTCACCGTCTCTTGTTACTTACAACGCCCTTATT CATGGGTATTGCTCTTTGGGGAGGGTTGAGGAGGCTCTCGGGATTTTGAGGGGCATGGCTGAGATGGACTTGTCCCCTGA TGCCGTTAGTTATAACATTGTTATTTCCGGATTTTGCAAACTCAAGGAGCTGGGGAAGGCGTATGGTTTGAAGGTGGAGC AGGATGAAAGGCCCTATATCTGGGGGTGTTGTGATAGATTGTCTTCATCACTTATGGAAAGCCTGTCGGATGAGGTTACT TATACTAGTGTGATCAATGATTATTGTGCTGAAGGTGAAGTGTGTAAGGCTCTTATATTGACTGATGAAATGAGTAAAAT GAGTCGCTACGAGGGGGGTCATTTGCGAACATCTTTTCTCGATTATGTACTTATGAATGGGCTTGATAAGAAAGCTAGAA CAAGTGCTGCTAAGAAGTCCCTTCTGGGGTTGTTTTATGGTTGGTGTACTAGACCGCCAGCTTTCATATATGATACTCTG ATAGAGAACTGCAGTAATAATGAATTTAAGAGTATGATAGAGCTTGCCAAAAGTTTCTGGATGAGGGGTTTAAAGAACGA AGCAGCCAGTGTTTTCAACACAGTACTTCAATGGAATTATAAGCCAGATGGAGCAGTTTACAATTTATTTATTGTTGAAC ACTCTACGCGTCTTAATGTTGATAAGGCATATAATATGTACATGGAGATGGTACATTATGGTTTTGCTTCTCATATGTTC TCTGTACTTGCTCTTATTCCAGCTTTATTTCGTGTTGAAAGGCACAATGAGATAAGGACGGTCATTGAAAACGTATTGAG GAGCTGTAATCTCAATGATTCTGAGCTACATAAAGCACTTGGTGAAACTGGCGACGACATCATGAAAGGTAAGATTGAAA TTGAAGATGCTCTTTTGAATGTGCTAGCTAAAATAGCTATGGATGATGGCCTGCTACTTAATGGTGGAAAGTGTTCATAT GCTCCAGCGATACCATAA
Protein sequence (LotjaGi2g1v0430900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSIANETSISNPMNLLLSRTVLKTLRRQMMVPNGTVMIRGFAGAGNLQTESNKAGEAGLWKATTTQKPNSVSFNAAIQR FCAEGRITEAEEVLQEMNRKGLAPDETTYTSLIHLFTKYQVYKVHKVMCDMIFSGFLPSVATYNDLVLAYCRVGSVDQAL RVLRDMVDKGVDPNLVSFNAVLEVLSRQHRWEDSEPLVEEMHRRGLAPHETTYKSLIINHCNKWQVDDAYKLLSQMIASG FSPSVAIYNHLVRAYCIEDRVEEAVRIFRGMAERGLSPDAESYNTLITKFCEDKELEKAIEMKTEMVEKGILPDAITFSS LIQALCPQRRLSQAFDLFQEMLRGGVLPGQLTYHCLINAYCLEGDFSMAFILHDEMIHKGLLSDSVTGFSPSLVTYNALI HGYCSLGRVEEALGILRGMAEMDLSPDAVSYNIVISGFCKLKELGKAYGLKVEQDERPYIWGCCDRLSSSLMESLSDEVT YTSVINDYCAEGEVCKALILTDEMSKMSRYEGGHLRTSFLDYVLMNGLDKKARTSAAKKSLLGLFYGWCTRPPAFIYDTL IENCSNNEFKSMIELAKSFWMRGLKNEAASVFNTVLQWNYKPDGAVYNLFIVEHSTRLNVDKAYNMYMEMVHYGFASHMF SVLALIPALFRVERHNEIRTVIENVLRSCNLNDSELHKALGETGDDIMKGKIEIEDALLNVLAKIAMDDGLLLNGGKCSY APAIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 629 | 629 | - | – | |
| Gene3D | 21 | 121 | 101 | 8.6E-13 | ||
| PANTHER | 68 | 118 | 51 | 3.7E-106 | – | |
| Pfam | 69 | 116 | 48 | 2.1E-13 | ||
| ProSiteProfiles | 70 | 104 | 35 | 12.375 | ||
| TIGRFAM | 72 | 106 | 35 | 1.9E-6 | ||
| ProSiteProfiles | 105 | 138 | 34 | 6.347 | ||
| Gene3D | 122 | 222 | 101 | 3.3E-24 | ||
| Pfam | 128 | 185 | 58 | 6.8E-10 | ||
| PANTHER | 133 | 310 | 178 | 3.7E-106 | – | |
| ProSiteProfiles | 139 | 173 | 35 | 12.912 | ||
| SUPERFAMILY | 141 | 379 | 239 | 7.59E-7 | ||
| TIGRFAM | 142 | 174 | 33 | 5.8E-7 | ||
| ProSiteProfiles | 174 | 208 | 35 | 11.016 | ||
| TIGRFAM | 176 | 208 | 33 | 0.0013 | ||
| ProSiteProfiles | 209 | 243 | 35 | 9.887 | ||
| TIGRFAM | 212 | 245 | 34 | 0.0015 | ||
| Gene3D | 223 | 328 | 106 | 2.3E-30 | ||
| Pfam | 240 | 271 | 32 | 3.6E-6 | ||
| ProSiteProfiles | 244 | 278 | 35 | 12.123 | ||
| TIGRFAM | 247 | 280 | 34 | 6.2E-8 | ||
| Pfam | 278 | 326 | 49 | 3.1E-14 | ||
| ProSiteProfiles | 279 | 313 | 35 | 11.893 | ||
| TIGRFAM | 282 | 315 | 34 | 1.4E-7 | ||
| PANTHER | 309 | 507 | 199 | 3.7E-106 | – | |
| ProSiteProfiles | 314 | 348 | 35 | 12.178 | ||
| TIGRFAM | 316 | 348 | 33 | 3.5E-5 | ||
| Gene3D | 329 | 473 | 145 | 8.4E-34 | ||
| ProSiteProfiles | 349 | 383 | 35 | 10.008 | ||
| Pfam | 352 | 381 | 30 | 7.6E-6 | ||
| TIGRFAM | 352 | 383 | 32 | 7.6E-5 | ||
| Pfam | 391 | 440 | 50 | 2.5E-15 | ||
| ProSiteProfiles | 392 | 426 | 35 | 12.88 | ||
| TIGRFAM | 394 | 428 | 35 | 1.0E-9 | ||
| ProSiteProfiles | 427 | 457 | 31 | 7.739 | ||
| TIGRFAM | 429 | 449 | 21 | 0.0027 | ||
| PANTHER | 476 | 668 | 193 | 3.7E-106 | – | |
| ProSiteProfiles | 477 | 507 | 31 | 8.736 | ||
| Pfam | 479 | 506 | 28 | 0.09 | ||
| ProSiteProfiles | 568 | 602 | 35 | 5.283 | ||
| ProSiteProfiles | 603 | 637 | 35 | 7.169 | ||
| Phobius | 630 | 650 | 21 | - | – | |
| Phobius | 651 | 725 | 75 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0430900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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