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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436400 |
| Transcript ID | LotjaGi2g1v0436400.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA topoisomerase 6 subunit A; TAIR: AT1G63990.2 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93275685..93278395) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCCTCTCATAAGACATTGCTGTGCGCGCCAACACTATGCAGGAATGGAAGATCTGCAAAATTCGTCGCTCAAGTTC TTCTCCGATCAAGAGCTCTGCTACGCCGATATCGTCCCTCCTGCTCAGGTAATCAACCCTTGCTATATATATACGCTCTT TCTTTCCCTCTCGCTGTGAAACTCCAACGCTTTCATTTTCACAGGTCCGAGCAAGAATTGAAGTTTCAGTGCTCAGTTTC CTCAAAATCCTGAACGCATCGAACCCTTCCATCTCACATTTGCCTCTGGTAACGATTTTTGAATTTGCAAGTTCCATTTT CTCTTTTAATTTTGATCAATTTCAAATTAATTTTTCTCTTGATTGATTTGCGAATTTCCAGATTCAGAGAAAATCTAGCA ACAGTCGAGTGAATCATGGCATGTTGACTGAACTATCATGCGTTTTTCTCTCACATTCTGTGTCTACAAGGTCTTTAACG AGACCTAATGCAGCAAAAGCCTTTGTTAGGGGTAAAGTACTTACAGATTTGACTACTATTTTCGTTTTTCTTCACAAGAA ATTTTAGGTTTCTGAGTTGTGAATTTCTGAATTGTAGTGTGGAAGGTGATGGAGATGTGCTATCAGATTTTGCTTCAGGA AAAGCGTGTTACTCAGAGGGAGCTCTTCTACAAGCTGCTATGTGATTCGCCGCACCTGTTTCCTTCTCAAACCGATGTAA ACAGGACAATCCAAGGTTCTCTCTCGCGCTTAATGTGAATTTTGATGTCTTGGTTCTCTGAATGGGAATATCAATTTGTA TGAAACAGATCTTGGAGCTTTGCTTCGGTGCAGTCGATACAGTCTTGGAATCATGGCGTCTAGTCGAGGACTCATAGCTG GCCGCCTGATTTTGCAGGTACCTCATCAAACCTTCATTCAAGGATATGTATGTTAAAAATGCACTTTATCGGATTTGAGA TAGATGATTATAGTATTCTTGTATATGAAGTGGTGAAATGTTTTGAATTTTGATGAATGTTGCAAACATAAGCATTAATC ACTTTCAGTTTCCGAATTTTCATGGATTAGGAACCAGGAAAAGAGGCTGTGGATTGCACTGTGTGTGGATCTTCTGGACA TGTAATTTCTGGTGACTTGGATTTGTTAGGGAGCTTGATTTTAAATTCAGATGCTCGGTACATTATAATTGTGGAAAAGG TGAGTTTGTTTAGTGGTAATTTGGCTTCTTCAAATTCCTAATTTTACTGACCTTACAATGTGCTACTGTGAATTGTGAAA CTGTCCATAGTTTCCCAATATAGAGAGATACCTTTTGATACTGTGACAATTAGTTCTGTTTAGCACGCAATATTTCAGCG GCTCACTGAGGATCGGTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTATCCAGATATGGCCACAAGGT ACTGTGCACACTTGCTGGCTAGATAATTCCATAGCTTTGAAGGGATGCTTCTAGATGTTCTGTTTTTTTCAAACTTGACT TGACAATATCATATCATATATGGCAATGGCAGTTATAAGTTTTGCTGATGAGTGCTTGAATGTCAATTTTTTTATATTTA AGCTCAGATTTCTTCTTCATCGAATTAGTCGAGCTTTTCCGGACTTGCCAATTTTAGCTTTGGTGGATTGGTATGATTGG TTGCCTTTGTGCTGAAATACAATCTTTCTCTTTAATCTTTTAGAAAAAAGAAGACATTCTACTTCTTCCTTTTTGTTAAC AAAGTTATTGTTAATTTGTATCTCCTTAACTCCTTTCTCACATTAAAACTTTTTACAGGAATCCAGCAGGATTAGCTATT CTATGTACCTTCAAATTTGGAAGTATAGGAATGGGCCTAGAGGCATATAGATACGGTAAATTTATAATCTCATTATACCA CAAACCATTCAAGCTCTAATATGTTGGAATGAAACTTGAGAAATGATTTATTTGCATTATCTAGCTTGCAATGTCAAGTG GTTAGGACTGCGGAGGCATGATGTACCCCTGCTACCTGATGAATCCCTTGTTCCATTGAAGCCAAAGGATCTGCAAATTG CTGAAAGCTTGATGTCCTCAGGGATCTTAGAGGTAAACTACGCAGAAGCTCTGAACACACACACAGCCCTACATTTACTT GCCTATACTGGAGTCCTGATTAGTGATATTTGCTCACCACTTTCAGTTACATCATTTTTATGCTGCTTTAGTTCTTGTAT GACGCATTTTGGCACAGATAGCTTTTGTGATTTTGTACCTTTTGGTAGATTTCTACATGAGTTTTGCATTCTCAGATGCT TATGCCAGCAATTATTTTGCACAAGAGTTGTACATGTTTACACAGGTGCTGCATAAGAATCAATCTGCATAAGAATTATT TTAATATTCAAAAAGCAATGTGCATCATACAATTCAGCTGAAGTGTGTTTTGACTGTTTTCCATCAACCAAATGGTGTTT GACAGGAGAATTACAAGGAAGAGGTTGCCTTAATGGTTCAAAGTGGAAGAAGAGCTGAAATTGAGGCCCTGTACTTTCAT GGATACGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCAGATTATATATAAACAATACTAATAGTCTAATA CTATGTTCATAACATTGTTTGGAACCAAGTCTAGTGATGTAAAATGTGAGTTTGAGCTCAGTCAAACGTGG
CDS sequence (LotjaGi2g1v0436400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACTGAACTATCATGCGTTTTTCTCTCACATTCTGTGTCTACAAGGTCTTTAACGAGACCTAATGCAGCAAAAGC CTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATTTTGCTTCAGGAAAAGCGTGTTACTCAGAGGGAGCTCT TCTACAAGCTGCTATGTGATTCGCCGCACCTGTTTCCTTCTCAAACCGATGTAAACAGGACAATCCAAGATCTTGGAGCT TTGCTTCGGTGCAGTCGATACAGTCTTGGAATCATGGCGTCTAGTCGAGGACTCATAGCTGGCCGCCTGATTTTGCAGGA ACCAGGAAAAGAGGCTGTGGATTGCACTGTGTGTGGATCTTCTGGACATGTAATTTCTGGTGACTTGGATTTGTTAGGGA GCTTGATTTTAAATTCAGATGCTCGGTACATTATAATTGTGGAAAAGGTGAGTTTGTTTAGTGGTAATTTGGCTTCTTCA AATTCCTAA
Protein sequence (LotjaGi2g1v0436400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTELSCVFLSHSVSTRSLTRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTDVNRTIQDLGA LLRCSRYSLGIMASSRGLIAGRLILQEPGKEAVDCTVCGSSGHVISGDLDLLGSLILNSDARYIIIVEKVSLFSGNLASS NS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 94 | 92 | 4.7E-7 | ||
| PANTHER | 4 | 154 | 151 | 1.2E-49 | – | |
| PANTHER | 4 | 154 | 151 | 1.2E-49 | ||
| SUPERFAMILY | 25 | 153 | 129 | 9.68E-30 | ||
| Pfam | 26 | 91 | 66 | 5.3E-18 | ||
| PRINTS | 68 | 85 | 18 | 3.4E-8 | ||
| PRINTS | 86 | 101 | 16 | 3.4E-8 | ||
| Gene3D | 95 | 161 | 67 | 1.1E-6 | – | |
| PRINTS | 144 | 161 | 18 | 3.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA catabolic process, endonucleolytic | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Molecular function | Endodeoxyribonuclease activity, producing 3'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0436400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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