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LotjaGi3g1v0020400.1

Overview

Field Value
Gene ID LotjaGi3g1v0020400
Transcript ID LotjaGi3g1v0020400.1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G16290.1 AAA-type ATPase family protein; Swiss-Prot: sp|A8MPR5|FTSI2_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic; TrEMBL-Plants: tr|K7M918|K7M918_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0020400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2089615..2095730) extracted from Lotus japonicus Gifu genome v1.2.

CGAACTCATCACATGTCCCCATTTAGAATCCAGTACAATCTTGAGGTTCAATCCGATCCTTTTATTTCGGCTTCGGATCA ATTTAGGTTGGACGGGTTGATCGGATAGATCCGACAATCCTAAGTATACCTTTAGTAATGTACCATGAGTTCAACCCAAA TAAAAAAGAAAGAAAGAAAACAACAACTGACTTATCCGAAGCTGGGGTAGCACTCCTTCACTTCAACTTCAACTTCAACT TGGAGATTGTCATTGATGAGCTTCAACCTCCTCTGAAAATGGCTTTATTCTCTGATTCATCAACTCAACCAATGCCAATG GCTGCTACACTCACCACCATCACCACATTCACAATGCACTAACCATTCCCATGGCTTCCCATTGCTTCCTTCGTTCTCTT CCTTCCTCTTCCTCTTCATCTTCTCCATCTCCATTCCCCAAATCCAAAAGATTCCCCAAACCTTCTTACCTCCCTTCAAT CTCCTCACGAATTCAACCCCCAGAACCCGACAGCAATGAAGACAACAACTCAAAACCCCCCAAAAACAACAACAACCACT TCAATCTCCTCAACCTCTCCGTAACCCTCACTGTAATCTCCGCCTCCCTCCCACAACCCTCTTCCGCCGCCACCGCCACC GTCAAGGGAAAAAAACGGGCACCCAGAAAACCATCCACCAAAAAGGTTGAAGCTATATCGCCGGAGGAGCTCAAGTCATG GACCCAGGGACTACCCCTTGTCTCCGAGCGTCTTCCTTACAGCGAAGTTCTGGAGCTGAAAAAGTCCGGGAAGCTCAAGC ACGTGATCAAGCCCGGTTCTGCAAAGTTGAGGCAACGGGCGGAGGCGGTTCTGGTGGTTTTGGATGATTCTAGAGTGATG AGGACAGTGTTGCCTTCAGTTCAGGGTGATTCCAAGTTCTGGGGTTGTTGGGATGAGTTGAAGGTTGATTCTTTGTGTGT GAATACGTTTACGCCGCCGATTAAGGGTCCGGAGTTGCCACTTCCTCTGTTGTCGAGGATTTGGGTGCCCCCTGTGGTGA GGGACTTTTTTATTTCACTTGGTGAGACGAAGCCGAAGAAGAAGGAGTCCAAGAAGCTTTTGGAGTTGAGGCAGACTAGG ATGGAGCTGAGGAGGCAGAAGGATGATGAAATGAGGAGGTTGAAGGAGGAGAATGATATGATGGAGAGGACAATGAGGAT TCAGAAGAAGGAGGAGGAGAGGAGGAGGAAGAAGCAGATAAGGAAGAAGAGGCAGCAGGAGTCGTTGATTGAGGCTAGAG AGAATTACGTGAGGATGGCTGATCTTTGGTCTGATTTGGCTACCAATCCGAATGTGGCGAATGCGCTTGGGATTCTTTTT TTCTATATTTTTTATAGGACTGTGGTGCTTAGTTATAGGAAGCAGAAGAAGGATTACGAGGACAGGCTCAAGATTGAGAA AGCAGAAGCTGAGGAGAAGAGGAAGCTGAGGCAGTTGGAGAATGAGATGGGGGGGATTGAAGGCGAGGATGATGATGAGA GTGAGCCAGGGAAAGGGGAGGAGAATCCTTATTTGAAAATGGCTAAGCAGTTTATGAGATCAGGGGCGCGTGTTCGAAGA GCACAAAACAAGACGCTTCCCCAGTATCTAGAGAGAGGTGTGGATGTCAAGTTTACTGATGTTGCCGGGCTGGGGAAAAT ACGGCTTGAACTTGAGGAGATTGTCAAGTTCTTTACTCATGGAGACATGTACCGAAGGAGAGGAGTGAAAATACCAGGTC TCATTAACCTAAACATTGAAAAGCATTTAATAGTATAATTTGAATTGTCTTAGCATTAGGGGATACTTTATTTCTGAAAT TTTAAAGGACAAATTACTTTACTATCTCTGGCATTTTGGCAATATTATGCTTGTAGAAATATTTGATTATCTTCTTGTAG TTACAATGTTTTTCATTTATTTAATAAAGATTGGAAGAACACATTCAATTTTGCAGTGCTTTGCACTTGACTAACTGAAG GTGAAATTGGTCACTTAATCAGGTGGCATACTTCTTTGTGGCCCACCTGGAGTGGGAAAGACATTGTTGGCAAAAGCAGT GGCGGGTGAGGCAGGGGTTAACTTCTTCTCTATTTCTGCTTCACAGTTTGTTGAAATATATGTCGGTGTTGGTGCTTCTC GTGTTCGAGCACTTTACCAAGAAGCCAAGGAAAATGTATGTGATATTTTTAGCCTTTCCATTTAACTCTTACAATTTTTC TTATTTGTTTAACTTCAAATTATTAGAGTTTGGTTCTTGGGACCTATTTCCACTAATAACCTTTTGTCAATCCTCATTTT GTTTGCTTCAAACTGACAACAGTCCTTTATTGTCAGTCATACTACATTTTATTGTCATCACTTGAAATTTTCCTACTTGT CCAGCTCAATATTTGCATCCAATTGGTTAACAATTCATATATATTTCCAGGCTCCATCTGTTGTCTTCATTGATGAGCTG GATGCTGTAGGAAGGGAGCGAGGCTTGATTAAAGGTTCAGGTGGGCAGGAACGTGATGCTACTCTTAATCAGGTTAAGCA TGGCACTACTGAACTTTCTGATTACCATTTATAAATAAACTAGTGTCCGTATTTTGGTTGATGTTTCCTATTTTACTGAA TGCTCCAGCTCCTGGTGTGCTTAGATGGATTCGAAGGAAGGGGGGAGGTGATCACTATTGCATCCACAAACCGACCAGAC ATTCTGGATCCAGCACTTGTGAGACCTGGCCGGTTTGATCGGAAAATATTTATTCCCAAACCTGGGCTCATTGGCCGGAT AGAAATTCTGAAGGTCGCAGCTCCTCTACTGTATTTAACCCGTCTGCTAGCATTCAGGATTTCTTTTAAATATAAAATAT ATATTTGCATCGCAAGACTTTTTCTCCCCAAAGTATTAGTCATAGTGCATCTGGGACAAACTGCGCCTTAATACATAGTT TGCCATACTCTGATAGGTCCATGCTCGTAAAAAGCCAATTGCGGGAGATGTGGACTATATGGCTGTCGCTAGCATGACTG ATGGAATGGTTGGTGCAGAGCTAGCCAACATAGTTGAGGTTGCTGCTATCAACATGATGCGGGACACAAGGACTGAGGTA ATGCCTCCATTATACAGCAAGTTTGTCTTTGCCAAATAGTTATTGTTCAGGTATTTCCTTATTGGCAATCAATATGCGTT TAGTTATTCCTGTATAGCACATCATATCCAATCTCCTTATCAATTTCTAAAAACAAGCTTTCAAATAAAAGGGTTTTATC TTACTAGGAGGGCATGTTTTTATTGCATGAATTATTCATTGTTCTTTGCAATGCATAATGATTTTTCTATGCCTCCAAAA TAAGAAGCCTCTTAATGTGGCATTAGAAAAGTTGCATGCATATACACAATGGGAAAGAGGTCCAAGGAGGAAGTAATAGA AAAGGGATTTACTGGTTTCAATAGCTGCAGTTATTCATTTCTGCTTTTTGCTGCCACAGATTACTACAGACGACTTATTA CAAGCTGCACAAATGGAAGAAAGAGGAATGTTAGATAGAAAGAATAGAAGCAGTGAGACATGGAAACAAGTAGCTATAAA TGAAGCTGCAATGGCTGTTGTGGCTGTGAACTTCCCTGATCTTAAAAACATTGAGTTTGTATGGACATTACTTTCTATCT TTTTTTTTTCTTGGTTAGGCATATTTCAGCTAATTTTTTTCCTCATTTGTAGAAGTACTTCAAAAATCCTTTTCTTTTTA ATAGTTATCGCAATGTCAGCATCTGCAAATCTCATCTGCATGCAATCTTTTCCTTCTGATTAATTCTGTGCATGTTAGAG GTCAAGGATTACCAAAAAGCTTATTACAAAAAAATATTATGGTTGAAGTCAATTTGTAAGAGATCAAGTTGAGGTGAAAA TGAAGGAGCCAAGTACTACCTCTAATTGTCTTTTTCTGCCTTGTTTATTCCTATTTCTGTGATCATTATCCTTGTGCCAT GCTGTTTGTGTTTGATAGTTTTGCATTTTGTTTTATATCTAATTGAGATTTCACTGTCATTGGATTTATTCCCATAAAAA TGAACATTTGTCTTTGCATTGTCCTATTAATATTCATCATTTGATCGGTAAAGGAACGTGGTATTTAAGCTTTTTGTTGC TTTGTGTTGTAGGTCACAATTGCTCCTAGAGCTGGTAGGGAATTGGGTTATGTTCGGGTGAAGATGGATTCCGTCAAATT TAATGAAGGAATGCTCACGTACGAATTCTTTAACTCCCTTTTTAATAAATATATTTAGTGATTGGTGAATGTTCTCCAAA TGAAATTCTTGTCTGTTTATTCCTAGCATCAGTGAATTATAATGTTTGCATTGCAAAGGCTTTATGTTGCCTGCATTATT CTTTTGATTCAAATTCTTACTTCTTGATCAAATTGCATCAGAAAACTATGTTTAGTACCTCACTTCCCATGTTTCTTCTC ATTACTTTACTATGATTATGCAGTCGGCAATCCCTCCTAGATCATATTACTGTTCAACTAGCTCCCCGTGCTGCTGATGA AATTTGGTTTGGGAGTGATCAGGTAATAGAAGATTTTTACTTGCTTTCTACAAATTTTCTCTCTCTAGTTTTATTTGTAA AGCTGTAGGTAAATACAGTTGCTGAACATACAAATAACACAGTTAACAAAACTTATTACTAACATCAAGCATGTTTTAAG GTATTTGTTAACTAGCCTTGATTAATTGCAAGAAGTTGATCTTTCTAGGGACCTTTTTTTGTATATCATTAAGTGGGATT ACAAACACTTCTGAAATCTTATTAGAGAAAAGAACACTTCTGAAATCTATTAGAGAAAAGAAGAAACATAAAACATAAAC AACATCTGTGACATACATTTTGTGTATGGGTCCTTCTTGTTTCACATATCTGATTATGAATGTGGATTAGTTTAGACTGG TTATACTAAATATTTTAACTGGATTTGCAATTTTTTCAGTTGAGCACGATATGGGCTGAAACTGCAGACAATGCTAGGTC TGCAGCAAGGATATTTGTTCTTGGAGGGCTTTCTGATAAGCATCATGGAATGTCCAATTTCTGGGTGTCAGACCGAATTA ATGTATGTGTTCTGTCTCAAGTTCTGTTTATTTGCAACTTTGGCATCAGTTACAATTGCAAGTACAATTTGGAACCAAGA GTTCCTTGCAATTCATCGTGAATAAACATTGTAAATAATGTAGGCCAATGGAAACTCTGCCTACAAATTTATCTTAAAAT ATCTTGATCATATCTTATAGTGGCATGAGAGAAACATAATAACACTTGAGAACATGTGGCAAACTGATTTTATGGTATTT CTTTGATTGTCAGGAAATTGATTCGGAAGCATTGCGGATTCTCAACTTGTGCTATGAACGTGCAAAAGAGGTAATGATGT TAATGGTCATGACTCTTGATTGAATTGAACGGTCACAAGTTCTGTTTTGAATGATTGAATATAAAAGTGACAAGCTTGTT TTGCTGCTTATCAGATCCTGCACCAAAATAGAACATTGATGGATGCGGTTGTGAATGAACTTGTTGAGAAGAAAAGCTTA ACAAAACAAGAGTTCTTTCAGCTAGTAGAGTTGCATGCGTGCCTGCAACCAATGCCTCGTAGCATTCTTGACATTCGGGT TGACAAGCGTAGAGAATTTCAGGCATTGATTAGTAACTAATGGCAAGGAAACAGCTTTTAAGAGCCATTGTGTAAGGGGA AAATGCCCCACCAATTTTGTGAATTTTCTGCGATATGTATAATTTAGTGTACCTTATTCCTGTATTATATTCTTTACTAA CATCCACACTATGTAGTATAAACATTTTTTTGGTCTCTACTCTTTAGCATTTGCTAACTGGGAAGGGGAGATTTGAACCC ATTTTCCCTCTGGAGGAAAGCCAAAATAAAACCTTTGAGCATTTTCTACTTTTGGGCGCCATTCTTAGCTAGGGAAAATT TGTTAATGCTACACTATTACATACTTCCCCACTTTTAATTAAGACAACACACTTGGCATGTCTGGTTAGTAATTTCCCCC CACCAAATGTGGTCACAGGTTGGAATGTTGGATTGG 

CDS sequence (LotjaGi3g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCCATTGCTTCCTTCGTTCTCTTCCTTCCTCTTCCTCTTCATCTTCTCCATCTCCATTCCCCAAATCCAAAAG ATTCCCCAAACCTTCTTACCTCCCTTCAATCTCCTCACGAATTCAACCCCCAGAACCCGACAGCAATGAAGACAACAACT CAAAACCCCCCAAAAACAACAACAACCACTTCAATCTCCTCAACCTCTCCGTAACCCTCACTGTAATCTCCGCCTCCCTC CCACAACCCTCTTCCGCCGCCACCGCCACCGTCAAGGGAAAAAAACGGGCACCCAGAAAACCATCCACCAAAAAGGTTGA AGCTATATCGCCGGAGGAGCTCAAGTCATGGACCCAGGGACTACCCCTTGTCTCCGAGCGTCTTCCTTACAGCGAAGTTC TGGAGCTGAAAAAGTCCGGGAAGCTCAAGCACGTGATCAAGCCCGGTTCTGCAAAGTTGAGGCAACGGGCGGAGGCGGTT CTGGTGGTTTTGGATGATTCTAGAGTGATGAGGACAGTGTTGCCTTCAGTTCAGGGTGATTCCAAGTTCTGGGGTTGTTG GGATGAGTTGAAGGTTGATTCTTTGTGTGTGAATACGTTTACGCCGCCGATTAAGGGTCCGGAGTTGCCACTTCCTCTGT TGTCGAGGATTTGGGTGCCCCCTGTGGTGAGGGACTTTTTTATTTCACTTGGTGAGACGAAGCCGAAGAAGAAGGAGTCC AAGAAGCTTTTGGAGTTGAGGCAGACTAGGATGGAGCTGAGGAGGCAGAAGGATGATGAAATGAGGAGGTTGAAGGAGGA GAATGATATGATGGAGAGGACAATGAGGATTCAGAAGAAGGAGGAGGAGAGGAGGAGGAAGAAGCAGATAAGGAAGAAGA GGCAGCAGGAGTCGTTGATTGAGGCTAGAGAGAATTACGTGAGGATGGCTGATCTTTGGTCTGATTTGGCTACCAATCCG AATGTGGCGAATGCGCTTGGGATTCTTTTTTTCTATATTTTTTATAGGACTGTGGTGCTTAGTTATAGGAAGCAGAAGAA GGATTACGAGGACAGGCTCAAGATTGAGAAAGCAGAAGCTGAGGAGAAGAGGAAGCTGAGGCAGTTGGAGAATGAGATGG GGGGGATTGAAGGCGAGGATGATGATGAGAGTGAGCCAGGGAAAGGGGAGGAGAATCCTTATTTGAAAATGGCTAAGCAG TTTATGAGATCAGGGGCGCGTGTTCGAAGAGCACAAAACAAGACGCTTCCCCAGTATCTAGAGAGAGGTGTGGATGTCAA GTTTACTGATGTTGCCGGGCTGGGGAAAATACGGCTTGAACTTGAGGAGATTGTCAAGTTCTTTACTCATGGAGACATGT ACCGAAGGAGAGGAGTGAAAATACCAGGTGGCATACTTCTTTGTGGCCCACCTGGAGTGGGAAAGACATTGTTGGCAAAA GCAGTGGCGGGTGAGGCAGGGGTTAACTTCTTCTCTATTTCTGCTTCACAGTTTGTTGAAATATATGTCGGTGTTGGTGC TTCTCGTGTTCGAGCACTTTACCAAGAAGCCAAGGAAAATGCTCCATCTGTTGTCTTCATTGATGAGCTGGATGCTGTAG GAAGGGAGCGAGGCTTGATTAAAGGTTCAGGTGGGCAGGAACGTGATGCTACTCTTAATCAGCTCCTGGTGTGCTTAGAT GGATTCGAAGGAAGGGGGGAGGTGATCACTATTGCATCCACAAACCGACCAGACATTCTGGATCCAGCACTTGTGAGACC TGGCCGGTTTGATCGGAAAATATTTATTCCCAAACCTGGGCTCATTGGCCGGATAGAAATTCTGAAGGTCCATGCTCGTA AAAAGCCAATTGCGGGAGATGTGGACTATATGGCTGTCGCTAGCATGACTGATGGAATGGTTGGTGCAGAGCTAGCCAAC ATAGTTGAGGTTGCTGCTATCAACATGATGCGGGACACAAGGACTGAGATTACTACAGACGACTTATTACAAGCTGCACA AATGGAAGAAAGAGGAATGTTAGATAGAAAGAATAGAAGCAGTGAGACATGGAAACAAGTAGCTATAAATGAAGCTGCAA TGGCTGTTGTGGCTGTGAACTTCCCTGATCTTAAAAACATTGAGTTTGTCACAATTGCTCCTAGAGCTGGTAGGGAATTG GGTTATGTTCGGGTGAAGATGGATTCCGTCAAATTTAATGAAGGAATGCTCACTCGGCAATCCCTCCTAGATCATATTAC TGTTCAACTAGCTCCCCGTGCTGCTGATGAAATTTGGTTTGGGAGTGATCAGTTGAGCACGATATGGGCTGAAACTGCAG ACAATGCTAGGTCTGCAGCAAGGATATTTGTTCTTGGAGGGCTTTCTGATAAGCATCATGGAATGTCCAATTTCTGGGTG TCAGACCGAATTAATGAAATTGATTCGGAAGCATTGCGGATTCTCAACTTGTGCTATGAACGTGCAAAAGAGATCCTGCA CCAAAATAGAACATTGATGGATGCGGTTGTGAATGAACTTGTTGAGAAGAAAAGCTTAACAAAACAAGAGTTCTTTCAGC TAGTAGAGTTGCATGCGTGCCTGCAACCAATGCCTCGTAGCATTCTTGACATTCGGGTTGACAAGCGTAGAGAATTTCAG GCATTGATTAGTAACTAA 

Protein sequence (LotjaGi3g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASHCFLRSLPSSSSSSSPSPFPKSKRFPKPSYLPSISSRIQPPEPDSNEDNNSKPPKNNNNHFNLLNLSVTLTVISASL PQPSSAATATVKGKKRAPRKPSTKKVEAISPEELKSWTQGLPLVSERLPYSEVLELKKSGKLKHVIKPGSAKLRQRAEAV LVVLDDSRVMRTVLPSVQGDSKFWGCWDELKVDSLCVNTFTPPIKGPELPLPLLSRIWVPPVVRDFFISLGETKPKKKES KKLLELRQTRMELRRQKDDEMRRLKEENDMMERTMRIQKKEEERRRKKQIRKKRQQESLIEARENYVRMADLWSDLATNP NVANALGILFFYIFYRTVVLSYRKQKKDYEDRLKIEKAEAEEKRKLRQLENEMGGIEGEDDDESEPGKGEENPYLKMAKQ FMRSGARVRRAQNKTLPQYLERGVDVKFTDVAGLGKIRLELEEIVKFFTHGDMYRRRGVKIPGGILLCGPPGVGKTLLAK AVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD GFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRIEILKVHARKKPIAGDVDYMAVASMTDGMVGAELAN IVEVAAINMMRDTRTEITTDDLLQAAQMEERGMLDRKNRSSETWKQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGREL GYVRVKMDSVKFNEGMLTRQSLLDHITVQLAPRAADEIWFGSDQLSTIWAETADNARSAARIFVLGGLSDKHHGMSNFWV SDRINEIDSEALRILNLCYERAKEILHQNRTLMDAVVNELVEKKSLTKQEFFQLVELHACLQPMPRSILDIRVDKRREFQ ALISN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 23 23 -
SignalP_GRAM_POSITIVE 1 17 17 -
Phobius 1 321 321 -
MobiDBLite 1 64 64 -
MobiDBLite 35 64 30 -
PANTHER 40 882 843 0.0
PANTHER 40 882 843 0.0
MobiDBLite 83 107 25 -
Coils 236 299 64 -
Phobius 322 342 21 -
Coils 339 379 41 -
Phobius 343 885 543 -
MobiDBLite 366 392 27 -
Gene3D 419 597 179 4.2E-59
SUPERFAMILY 421 666 246 1.05E-61
SMART 461 600 140 1.0E-20
CDD 462 598 137 5.00306E-26
Pfam 465 597 133 6.4E-42
PRINTS 469 488 20 5.9E-5
Gene3D 599 673 75 1.5E-18
Pfam 620 662 43 3.6E-11
Gene3D 674 861 188 6.3E-31
Pfam 680 853 174 8.8E-14
SUPERFAMILY 680 856 177 2.75E-34
PRINTS 772 791 20 5.9E-5

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0020400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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