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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0038900 |
| Transcript ID | LotjaGi3g1v0038900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT3G14740.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O54826|AF10_MOUSE Protein AF-10; TrEMBL-Plants: tr|A0A1J7H9J1|A0A1J7H9J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0038900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4187644..4190729) extracted from Lotus japonicus Gifu genome v1.2.
TGTTAATATAAAATATTATATATGAAAAAAAAATTAAATTCGAGAATGCATATGATTTGATTTTTATGTTGAAAGGAAAG TGAATTGATTAATAAAACAAATCCAGAGGTTTGGATCATTTGAATTTATAAACATCCCTAAACTAATGGACCTAAATCCA CTGACTAAACTTCACTAAACCCATGTGTTTCCCGCTGTACAAAACAAAGCGCGGGTTCCGTAATCTCAATTAATCAATAA TTCAAAACGACCAGCGTTTTAATCTCCCGCCTTATTGAAAACTTGCAATTTTCTTTCTCCCCCTCTTCCATTCCCTCGCT TTTTTCCACTGCTTTTTCATTTTCCTCTCCCTCCCAATTTCATTTCAATTCAAAAATCCCACATAAACCAAACCCAATTC TCAGTTTCTCAAACACACACATCTCAATCCCTTTCTTCTTCTCCTCCTCCCAATCTCACTCTCTTCTCCACCAAACAATG GATTCATTCCTCAACCACCTACCTCCCCTCAAGAGACACAGACTCATCCACCAACACCAAAACCAAAACACTCCAACCCC ATCCTCACTCTTACCTGCAAAAAAACGCAAAGAGTCTCGAAACTCCGCCACTTCCCACACCAACGACACCGTTTCACCAT CTCCCACTGTTTGTTATCCCCTACCCACTAAGAAAAGGGTCTTCGCCCTCCAACCTCATCCCCAAAACGACACCGTTTCG AGCTTTGACCTCAACGTCGAATACCAACCCTCTCCCAATCGCAAATCGCACAAAACTTCTGAAAAACCCGAACCAAAATC TGAATCCATACCCGAACCTGAATCCGTTCTGAAATCTGAATCCGTGCCCGAACACGAGTTTGAATCCGAACCAAAATCTG AATCCGATCCTAAATCCGTATCCGAACCCGAACCTGAACAACTGCAGCAAAATCAGCACGAACACGCGATCGACGACGAT GGCGACGGTGATGAAGAAGACGGGATTCTATGCTGTGTATGCCAGAGCACTGACGGCGATGCTGAAGATCCGATCGTTTT CTGCGACGGATGCGATCTCATGGTGCACGCGTCCTGCTACGGGAACCCGCTGTCAACTTCGATCCCCGACGGCGACTGGT TCTGCGAACGGTGCCGATTCGGGGACCAAAACAGCGAGTGCCAGTTGTGTCCGGTGAAGGAGGGAGCGATGAAGCGGACG ACGGAGGGAATGTGGGCCCATGTGGTGTGCGCGCTGATTGTGCCGGAGGTTTTCTTCGCTGACCCGGAAGGGAGGGATGG GATCGATTGCTCTAGGGTTCCGAAGAAGCGGTGGTCGGAGAAGTGCTATGTGTGTGGGTGCGGTGGTGGGTGTGCGGTGG TGTGCTCGGAGCCCAAGTGTGGGTTGGCTTTTCATGCTAGTTGTGCGATGAAGGAGGAGCTTTGTATTGAGTATAAGCAG GATAGAAAGGGTGCTACCATTGTTGCTGGGTTCTGTAAAACCCATAGTCTTCTGTGGGAGAAGGTAACATCTTTTTCAAT TTTTGGATTATTAGACTCATTTTTTAAAAAATAATGTTTATGATTTTTATAAACTTGGGTTTAGGAAGAAAATATTGAGT GTAATGTGAAGAGTACAATGAGATATGTAATGTGGAAAATCTATAAGCATGATTTGTGAACATAGAGTGAAAAATTGATA GGATAAGTGCTAACAACATTTTCTTTCATTTGAATATTTATTGTTTGAAATTCATGTCTGACCTGTAAAATCCGGACGTT AGATTTATAGCTTTAGTGAATGACACGTGAATTTGAATCAGTAAATAAGATAATGTTGAAAAGAACGTGTTAACGTCGTG ACATATTTCTTGATATGAATATGAGGTTGTATTGGTTTGATGGTCTTTAATTAATTTTTTTTACATTAAATTATATATTG CCTCACTTCACTATGTCTAGTGATTTAACTGATTTATGAAGTACTACTACATATTGAAGGATTGATTTAATTACTGAATG TATATTTATCAACTAATATGATGTATATGTATTCTTAGTTTGGTGATTGGTATTTTATGAACAACTTCAATGGTTAGATT AAACATGCAATTGCAAGGCTTAATTAAGTGTTGTTATTTTTGTTGTTTTTGGCAGCAACAGCTATCCGGGAAATACAAAA TTGTTGCAGTTGAAGATAAAAAGTAGCAATGTGGTGCAGCAAAGTTAGTATATTGATTTACTCTGTTCGTATATTGAACT TTCTCTTTAGGGGATAGCAAAGTTAGTAAGGAGTTCATTTGAGATTGATGTAGATTTTAGTGATTTGCTTTTCATATCTT TTATGCTTTGTGTTAGTGTTTTGAGTCTTCAGGTGAAGAAAACTGTGTTCAATTAGAACAATAACAGATTCTGACCAACT TGGGTTTGCAGATAGGGGGAAAATGAAAAAAATGGTTGGAAATAGAGTTGCTATTGAGTTTAATTTGGAATGTACCTACC ACCTGGTGCAGTTATTGAATGGACAAAATTCATAACAGGAAGCACATCTCTTCCTTTTTTTTTCATTGTATTATCATAAA CTATGAATTCAAATTCATCGTGATACATCAATGGTAACATTATGCCTAATATTGTTTGATCAGATGCTCTTAATTTGATT GCTGCAAAATGTCTGAATAAAAATTGTTATAGACATAGAGGGAATAACGGCACTTCCTCATTAGTTTTGAGGTGCGCCTC TGTTCTGGATTGAGTGATTATGTTGTAATGTTTAACATGGATCATGAATATGCCTTGCATTAAATTTCAAATGAGTTTGC TTAGTATAACTAGGTTTCATTTATCTTTGGACCATTTGTTTTACGCTTGATTACTGCAAAGTGCATACAGAGACACGTTT GTATGTCAAGTTTCTTCACCCTTGTCCAGGGAAATGAGTTATTTCTTCGACTTTGTTTCAATAAGCTAGTTACATAATGA AAGGCCAAATAATTTCTTTGATTATATGAATTTTAAACTCTCCACATCTAGATAGACCAACCTTTCGAATATAGGTGGAT TCAAAAAAAAAAATCATTGTCTTTGAATGAACTGGATGTAAGAAGA
CDS sequence (LotjaGi3g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCATTCCTCAACCACCTACCTCCCCTCAAGAGACACAGACTCATCCACCAACACCAAAACCAAAACACTCCAAC CCCATCCTCACTCTTACCTGCAAAAAAACGCAAAGAGTCTCGAAACTCCGCCACTTCCCACACCAACGACACCGTTTCAC CATCTCCCACTGTTTGTTATCCCCTACCCACTAAGAAAAGGGTCTTCGCCCTCCAACCTCATCCCCAAAACGACACCGTT TCGAGCTTTGACCTCAACGTCGAATACCAACCCTCTCCCAATCGCAAATCGCACAAAACTTCTGAAAAACCCGAACCAAA ATCTGAATCCATACCCGAACCTGAATCCGTTCTGAAATCTGAATCCGTGCCCGAACACGAGTTTGAATCCGAACCAAAAT CTGAATCCGATCCTAAATCCGTATCCGAACCCGAACCTGAACAACTGCAGCAAAATCAGCACGAACACGCGATCGACGAC GATGGCGACGGTGATGAAGAAGACGGGATTCTATGCTGTGTATGCCAGAGCACTGACGGCGATGCTGAAGATCCGATCGT TTTCTGCGACGGATGCGATCTCATGGTGCACGCGTCCTGCTACGGGAACCCGCTGTCAACTTCGATCCCCGACGGCGACT GGTTCTGCGAACGGTGCCGATTCGGGGACCAAAACAGCGAGTGCCAGTTGTGTCCGGTGAAGGAGGGAGCGATGAAGCGG ACGACGGAGGGAATGTGGGCCCATGTGGTGTGCGCGCTGATTGTGCCGGAGGTTTTCTTCGCTGACCCGGAAGGGAGGGA TGGGATCGATTGCTCTAGGGTTCCGAAGAAGCGGTGGTCGGAGAAGTGCTATGTGTGTGGGTGCGGTGGTGGGTGTGCGG TGGTGTGCTCGGAGCCCAAGTGTGGGTTGGCTTTTCATGCTAGTTGTGCGATGAAGGAGGAGCTTTGTATTGAGTATAAG CAGGATAGAAAGGGTGCTACCATTGTTGCTGGGTTCTGTAAAACCCATAGTCTTCTGTGGGAGAAGCAACAGCTATCCGG GAAATACAAAATTGTTGCAGTTGAAGATAAAAAGTAG
Protein sequence (LotjaGi3g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSFLNHLPPLKRHRLIHQHQNQNTPTPSSLLPAKKRKESRNSATSHTNDTVSPSPTVCYPLPTKKRVFALQPHPQNDTV SSFDLNVEYQPSPNRKSHKTSEKPEPKSESIPEPESVLKSESVPEHEFESEPKSESDPKSVSEPEPEQLQQNQHEHAIDD DGDGDEEDGILCCVCQSTDGDAEDPIVFCDGCDLMVHASCYGNPLSTSIPDGDWFCERCRFGDQNSECQLCPVKEGAMKR TTEGMWAHVVCALIVPEVFFADPEGRDGIDCSRVPKKRWSEKCYVCGCGGGCAVVCSEPKCGLAFHASCAMKEELCIEYK QDRKGATIVAGFCKTHSLLWEKQQLSGKYKIVAVEDKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 17 | 59 | 43 | - | – | |
| PANTHER | 21 | 338 | 318 | 4.3E-80 | – | |
| PANTHER | 21 | 338 | 318 | 4.3E-80 | – | |
| MobiDBLite | 72 | 164 | 93 | - | – | |
| MobiDBLite | 74 | 94 | 21 | - | – | |
| MobiDBLite | 95 | 142 | 48 | - | – | |
| Gene3D | 153 | 224 | 72 | 3.5E-18 | ||
| SUPERFAMILY | 162 | 231 | 70 | 8.2E-17 | ||
| ProSiteProfiles | 169 | 222 | 54 | 10.166 | ||
| CDD | 171 | 219 | 49 | 1.732E-20 | – | |
| SMART | 171 | 220 | 50 | 1.9E-11 | ||
| Pfam | 172 | 220 | 49 | 1.3E-12 | ||
| ProSitePatterns | 172 | 219 | 48 | - | ||
| Gene3D | 225 | 338 | 114 | 2.9E-18 | ||
| ProSiteProfiles | 225 | 337 | 113 | 20.65 | ||
| Pfam | 227 | 336 | 110 | 4.4E-26 | – | |
| CDD | 228 | 336 | 109 | 2.97549E-19 | – | |
| SMART | 282 | 337 | 56 | 2.9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0038900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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