Domain Predictions — View

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PS51805

Source: ProSiteProfiles

Description

Extended PHD (ePHD) domain profile.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0226000_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|A0A151TYG2\|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC	Domains G3DSA:2.170.270.10 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR041955 IPR042011 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF134 SM00249 SM00317 SM00508 SSF57903 SSF82199 cd15495 cd15663	31
LotjaGi1g1v0249800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phd finger protein, putative; TAIR: AT1G77800.1 PHD finger family protein; Swiss-Prot: sp\|Q7YZH1\|RNO_DROME PHD finger protein rhinoceros; TrEMBL-Plants: tr\|A0A0R0KNZ6\|A0A0R0KNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0249800	Domains Coil G3DSA:3.30.40.10 IPR001965 IPR002219 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 NON_CYTOPLASMIC_DOMAIN PF13831 PF13832 PS01359 PS50016 PS50081 PS51805 PTHR13793 PTHR13793:SF96 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00249 SSF57903 SignalP-noTM cd15571 mobidb-lite	27
LotjaGi1g1v0284200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|I1JYS9\|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR041955 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF134 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 cd15663	38
LotjaGi1g1v0529500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662	44
LotjaGi1g1v0529500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662 mobidb-lite	45
LotjaGi1g1v0529500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662 mobidb-lite	45
LotjaGi1g1v0705900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Breast cancer associated RING 1; TAIR: AT1G04020.1 breast cancer associated RING 1; Swiss-Prot: sp\|F4I443\|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr\|A0A0B2PNV8\|A0A0B2PNV8_GLYSO Protein BREAST CANCER SUSCEPTIBILITY 1 like; Found in the gene: LotjaGi1g1v0705900	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10190 IPR001357 IPR001841 IPR013083 IPR017907 IPR031099 IPR034732 IPR036420 PF00533 PF13771 PF13920 PF16589 PS00518 PS50089 PS50172 PS51805 PTHR13763 PTHR13763:SF9 SM00184 SM00292 SSF52113 SSF57850 cd16449 cd17720 cd17734 mobidb-lite	27
LotjaGi3g1v0038900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G14740.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp\|O54826\|AF10_MOUSE Protein AF-10; TrEMBL-Plants: tr\|A0A1J7H9J1\|A0A1J7H9J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0038900	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 PF00628 PF13832 PS01359 PS50016 PS51805 PTHR13793 PTHR13793:SF107 SM00249 SSF57903 cd15492 cd15571 mobidb-lite	19
LotjaGi3g1v0038900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G14740.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp\|P55197\|AF10_HUMAN Protein AF-10; TrEMBL-Plants: tr\|A0A1J7H9J1\|A0A1J7H9J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0038900	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 PF00628 PF13832 PS01359 PS50016 PS51805 PTHR13793 PTHR13793:SF107 SM00249 SSF57903 cd15492 cd15571 mobidb-lite	19
LotjaGi3g1v0044400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G15120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|P40340\|TBP7_YEAST Tat-binding homolog 7; TrEMBL-Plants: tr\|A0A0B2R803\|A0A0B2R803_GLYSO Tat-binding like 7; Found in the gene: LotjaGi3g1v0044400	Domains Coil G3DSA:1.10.8.60 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR003960 IPR013083 IPR027417 IPR034732 IPR041569 PF00004 PF13771 PF17862 PS00674 PS51805 PTHR23069 PTHR23069:SF7 SM00382 SSF52540 cd00009 mobidb-lite	22
LotjaGi3g1v0394900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp\|Q9M364\|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr\|A0A151SIL1\|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900	Domains G3DSA:2.170.270.10 G3DSA:3.30.40.10 IPR001214 IPR003616 IPR013083 IPR034732 PF00856 PF13832 PS50280 PS50868 PS51805 PTHR13793 PTHR13793:SF141 SM00317 SM00508 SSF82199	16
LotjaGi3g1v0394900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp\|Q9M364\|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr\|A0A151SIL1\|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF141 SM00249 SM00293 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 mobidb-lite	38
LotjaGi6g1v0312100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Breast cancer associated RING 1; TAIR: AT4G21070.1 breast cancer susceptibility1; Swiss-Prot: sp\|Q8RXD4\|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; TrEMBL-Plants: tr\|V7BPN4\|V7BPN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312100_LC	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.10190 IPR001357 IPR001841 IPR001965 IPR011364 IPR013083 IPR017907 IPR031099 IPR034732 IPR036420 PF00533 PF13771 PF13923 PS00518 PS50089 PS50172 PS51805 PTHR13763 PTHR13763:SF0 SM00184 SM00249 SM00292 SSF52113 SSF57850 cd15571 cd17720 cd17734 mobidb-lite	30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.69