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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003105
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.998s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007239.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 2811159 2819313 -
5 domain predictions
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Lj0g3v0128679.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356508242|ref|XP_003522868.1| chr0 58166236 58169952 +
5 domain predictions
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Lj0g3v0266169.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356546288|ref|XP_003541561.1| chr0 137822125 137828672 +
5 domain predictions
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Lj0g3v0269559.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 139649442 139651574 -
5 domain predictions
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Lj0g3v0293009.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform X1 [Cicer arietinum] gi|502123658|ref|XP_004498209.1| chr0 152088549 152092608 +
5 domain predictions
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Lj0g3v0328909.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Glycine max] gi|356577497|ref|XP_003556861.1| chr0 171938958 171939713 -
5 domain predictions
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Lj1g3v3904410.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] gi|356560426|ref|XP_003548493.1| chr1 45483181 45490448 -
5 domain predictions
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Lj1g3v4059050.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356504621|ref|XP_003521094.1| chr1 48012042 48015981 +
5 domain predictions
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Lj2g3v1989010.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29682391 29694387 -
5 domain predictions
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Lj2g3v1989020.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29696910 29699948 -
5 domain predictions
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Lj2g3v1989030.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29702847 29705210 -
5 domain predictions
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Lj2g3v3339680.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| chr2 42793639 42797488 -
5 domain predictions
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Lj4g3v1909910.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr4 27054406 27058264 -
5 domain predictions
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Lj5g3v2244670.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cicer arietinum] gi|502106852|ref|XP_004493077.1| chr5 32535927 32538525 -
5 domain predictions
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Lj6g3v0156100.1
n.a. SET domain protein [Populus trichocarpa] gi|224126633|ref|XP_002329603.1| chr6 1604629 1606162 +
5 domain predictions
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Lj6g3v0156120.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Glycine max] gi|356577497|ref|XP_003556861.1| chr6 1629200 1630657 +
5 domain predictions
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LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
4 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
4 domain predictions
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LotjaGi1g1v0633100.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633100 LjG1.1_chr1 118724052 118732969 -
4 domain predictions
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LotjaGi1g1v0655200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121468708 121473568 -
4 domain predictions
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LotjaGi1g1v0655200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
4 domain predictions
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LotjaGi1g1v0655200.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
4 domain predictions
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LotjaGi2g1v0014000.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G13460.1 SU(VAR)3-9 homolog 9; Swiss-Prot: sp|Q9T0G7|SUVH9_ARATH Histone-lysine N-methyltransferase family member SUVH9; TrEMBL-Plants: tr|I1KKL7|I1KKL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0014000 LjG1.1_chr2 5118191 5123505 +
4 domain predictions
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LotjaGi2g1v0419200.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91740680 91751300 -
4 domain predictions
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LotjaGi2g1v0419200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91743422 91751275 -
4 domain predictions
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LotjaGi2g1v0419400_LC.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419400_LC LjG1.1_chr2 91757175 91760984 -
4 domain predictions
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LotjaGi2g1v0419500_LC.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TAIR: AT2G35160.1 SU(VAR)3-9 homolog 5; Swiss-Prot: sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419500_LC LjG1.1_chr2 91763787 91767174 -
4 domain predictions
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LotjaGi3g1v0102400.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G04940.1 SU(VAR)3-9 homolog 1; Swiss-Prot: sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|A0A0B2PC71|A0A0B2PC71_GLYSO Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Found in the gene: LotjaGi3g1v0102400 LjG1.1_chr3 12706709 12711154 -
4 domain predictions
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LotjaGi3g1v0142000.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G35160.5 SU(VAR)3-9 homolog 5; Swiss-Prot: sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5; TrEMBL-Plants: tr|V7BLI1|V7BLI1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142000 LjG1.1_chr3 18845367 18849284 +
4 domain predictions
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LotjaGi3g1v0309900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3; TrEMBL-Plants: tr|I1M0I3|I1M0I3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0309900 LjG1.1_chr3 65689534 65697679 -
4 domain predictions
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LotjaGi4g1v0151300.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G13460.1 SU(VAR)3-9 homolog 9; Swiss-Prot: sp|Q9T0G7|SUVH9_ARATH Histone-lysine N-methyltransferase family member SUVH9; TrEMBL-Plants: tr|A0A072U350|A0A072U350_MEDTR Histone-lysine N-methyltransferase, suvh protein, putative; Found in the gene: LotjaGi4g1v0151300 LjG1.1_chr4 24979158 24988384 +
4 domain predictions
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LotjaGi4g1v0278600.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
4 domain predictions
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LotjaGi5g1v0349400.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349400 LjG1.1_chr5 66488392 66491484 -
4 domain predictions
 –