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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0150300 |
| Transcript ID | LotjaGi3g1v0150300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-binding cassette transporter; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|G7JF16|G7JF16_MEDTR ABC transporter B family protein; Found in the gene: LotjaGi3g1v0150300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20210127..20210687) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATTTCAGGAGCATTTTAAGTGCCCTTCCAAATTTGACAGCCATCACAGAGGCAACTTCTGCCATCACTCGCCTCTA TGAAATGATTGATAGGGTGCCAGATATAGATTCTGAAGACAAGAAAGGAAAGGCTTTATCACATGTGAGAGGAGAAATTG TATTTAAAGACATCTATTTCTGCTACCCATCTAGGCCAGATTCACCAGTCTTGCAAGGATTTAATCTCACTGTTCCAGCA GGCAAGAGTATAGGCCTTGTGGGGGGTAGTGGTTCAGGAAAATCCACTACAATTGCACTGCTTGAAAGGTTTTATGACCC TGTTGAAGGAGAAATACTCTTGGATGGCCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCCCATTTTGGCTTAG TAAATCAAGAGCCAGTTCTTTTTGCCACATCAATAATGGAGAATATAATGTTTGGAAAAGAAGGAGCTTCAATGGAAAGT GTAATAGATGCAGCTAAAGCAGCAAATGCACATGATTTCATCGTCAAGTTACCGGATGGATATGAAACTCAAGTAAGTTG A
CDS sequence (LotjaGi3g1v0150300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCAGGAGCATTTTAAGTGCCCTTCCAAATTTGACAGCCATCACAGAGGCAACTTCTGCCATCACTCGCCTCTA TGAAATGATTGATAGGGTGCCAGATATAGATTCTGAAGACAAGAAAGGAAAGGCTTTATCACATGTGAGAGGAGAAATTG TATTTAAAGACATCTATTTCTGCTACCCATCTAGGCCAGATTCACCAGTCTTGCAAGGATTTAATCTCACTGTTCCAGCA GGCAAGAGTATAGGCCTTGTGGGGGGTAGTGGTTCAGGAAAATCCACTACAATTGCACTGCTTGAAAGGTTTTATGACCC TGTTGAAGGAGAAATACTCTTGGATGGCCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCCCATTTTGGCTTAG TAAATCAAGAGCCAGTTCTTTTTGCCACATCAATAATGGAGAATATAATGTTTGGAAAAGAAGGAGCTTCAATGGAAAGT GTAATAGATGCAGCTAAAGCAGCAAATGCACATGATTTCATCGTCAAGTTACCGGATGGATATGAAACTCAAGTAAGTTG A
Protein sequence (LotjaGi3g1v0150300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFRSILSALPNLTAITEATSAITRLYEMIDRVPDIDSEDKKGKALSHVRGEIVFKDIYFCYPSRPDSPVLQGFNLTVPA GKSIGLVGGSGSGKSTTIALLERFYDPVEGEILLDGHKINRLQLKWLRSHFGLVNQEPVLFATSIMENIMFGKEGASMES VIDAAKAANAHDFIVKLPDGYETQVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 185 | 182 | 1.1E-107 | ||
| PANTHER | 4 | 185 | 182 | 1.1E-107 | – | |
| Gene3D | 5 | 45 | 41 | 4.9E-89 | ||
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 186 | 165 | - | – | |
| SUPERFAMILY | 44 | 185 | 142 | 2.3E-43 | ||
| Gene3D | 46 | 185 | 140 | 4.9E-89 | – | |
| Pfam | 71 | 173 | 103 | 6.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi3g1v0150300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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