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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0172600 |
| Transcript ID | LotjaGi3g1v0172600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23862197..23866228) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAATCAAATAATTATACTCTTTTAATAAAACTCTTTTTTTGGTAGAATAGAACCCATCTAGAAATCAAGCTTGACTT CATTCTTCACATTACAAAATCCCAAACCCTAATTCCCAAATCCACAGAAATCGATTCCAATGGCGGAGCACTTGGCATCA ATCTTCGGCACAGAGAAAGACAGAGTGAATTGCCCATTCTACTTCAAGATCGGAGCATGCAGACATGGCGATCGCTGCTC CAGGCTCCACACCAAACCCAGCATCAGCCCCACCATTCTCCTCTCCAACATGTACCAACGCCCTGACATGATCACTCCCG GCGTCGACGTTCACGGCCAACCCATCGACCCTCGCAGGATCCAGGACCACTTTGAAGAATTCTATGAGGATTTGTTTGAA GAGTTGTCTAAGTATGGTGATATTGAAAGCCTCAATGTGTGTGATAACCTCGCTGATCACATGGTTTGTTGCTGCTTGGT ACCCTGCAGAATTTCTTTCAGTTTGTTATTTGGATTTTTGATTGAGATTTTGTCTTGTTTTTTGTTTTCAGGTTGGTAAT GTGTACGTTCAGTTTAGAGAGGAAGAACATGCTGGTAATGCTGTTAGGAATCTCACTGGAAGGTTTTATGCTGGTCAGTT ACTTGTTTCTATGCTGTTTTTGTTTTCTTTATGGTGAACTGGTTTGATTACTGAATAGTTTGTGATAATCTAAATGCTAG TTGTTAGATTGTATGTTTGCCAATATAGGTTAGGGTTTCTGATTACCCCCAATTGCTTGCAATTGTTTTCTGTGTGAAGT TTGAACATCAACTTCTCTTTCAACTGTTTTTATAATTGATGATATTGATAACTGAATATTAATAATTGTTACTGAATAGT TTATGATAATCAAAATGCTAATTGTTAGATTGTGTGTTAGTGAATATAGTATAGGGTTTCTGATTACCCCCAATTGTTTG CAATTGTTTGCTTTGTGAAGTTTGAACATCAACTTCGCTTTCAACTGTTTTGTAATTGATGATGATAATCGAATAATAGC ATTTCTGTGTGTGTGTGTTAGCCAATGAATGTAAGTGTAGATTATTTTATAAATATAGATGGGTATAGGGTTGATGGTTA CCCAATTGTGTGTCTTTGTCGTCTGAGTTTCCATTCTTTGTGAAGTATGAACATCAGCTCATCTGTTTCTGTTGTTTCCC ATGCTTGCAATTGTTTGCTTTGTGAAGTTTAAACATCAAAATCTCTTTCAACTGATTTATAATTGATGTTGACGATAACC ACATAATAATAATTGTGTGTGTGTTGGCAAACGAATGTAGATGTAGATTACTTTATAGATATAGACGGGTATAGGGTTGA TGGTTACCCGATTTTGTGTCTTTGTCGTCTGAGTTTCCATTCTTTGTGAAGTATGAACATCAGCTCAGCTGTTTTTGTTG TTTCCCATGCTTTTAGGTCGTCCAATTATTGTTGACTTCTCTCCGGTGACGGATTTTCGGGAGGCTACTTGCAGGCAGTA TGAGGAGAATACTTGCAACCGTGGTGGTTATTGCAACTTCATGCACTTGAAAAGAATTAGCAGGTAGTATTTTAACGTTG TCCATTAGTTTTTTTTTTCTTTCTTGTTCATTTGGTTGTGGGGTTGAATTAATGGCTCATATTTTTTAATGTGTGCTGTG TCCAGGGAATTGAGGCGCCAGTTGTTTGGGAAGTCTCATGGAAGGCACAGCAGGAGCCGGAGCAGGAGCCCATACAGGCA TCGGAGCCATGAGGATCGGTCTCATCGCAGTCATAGCAGTAAGTATGATGACAGAGACTATTATCGTGAGATTCGTAGCA GGAGACGCAAGAGCACAAGTCCTGAGCGTAGGAGGGGACGGAGTCGCAGTCGGGAAAGGAGGAATCGTACTCCAGTCAGG GATCCCAGTGAGGAGAGACGAGCCAGAATTGAGCAGTGGAACAGGGAGAGGGAAGAGCAAGGTTCTGCAAGTAAGGCTAA TACTGAGCAAACCAACAATGGTGACAGTGGGCACATGCAGAATTCTAGCACATATGATGGGCTTCAGCAACAAGAGCAGC AACAGCAACCTCCTCAGGAGGGATATTGATCTTTTCATGTTATTATGGTTTGTATTCTCTCCCCTTTTGTTTTAATTGCA TATTCCTATAGTCCTAGCAAGGGAAGAGGCTATTTTAGCACAGATCACCCACAGAATAAATACAGCTTACCTCCCATTTT CCAATGTGCAGGTGCAGGTGCACTGTCTGTGATATGGAATGTGTTAAACTCCCTTCCCCTTTTTTTTGACTTCTAGGATT TTTCCATTTTGTTTTTCATGCATGATGTGTGATTGTATGTAAATGCTTGTCCCATTTTATGCAGGGTTCTAAATATTTCT TTACTTTTAACCATGTTTTCTACACTGATCTTTCATAGGCTAACTGTATGATGTATTGGTGAAAAATGTGTTTGAAATAC TTAGCTGCTGAGCACTTTCTTCTTTTCACTGTATGTATAAAATTAATCTGAAAATAATGTGAAAATGTTAATTTTTCATG TCTCATGCCGATCCTTCAAATTTTTAGCTATCCTGTAGCCAAGAATTTTTTGTTTTTTTCTTCAAAGCTGTTCATCTTTA CTGTCTTTCCTGTTGAGTTTTTCAAATGTGGTGTCAATTTCTTTGCATTTCAATGTCTTTCACTAATTGCAGTATAGCCT CAGCCCTCAAGGCATTCTGGCTATGTAGTCCTAAAAAAACAGCCTTGTCATTCACGGCTAGATGCCCGGAATTCAATGTA TACTTTTTGTTATCTTTACATCTTTCTGTACGAAGAACGGGTGTCCCTTCTTAACTGTCTATTTATGCCTGAAACAAGGG TTTCACCTTTTCTCAACTGACTATTTATGAGCATCTAATAGATCATGCATGCATGCTACAGTGGTTGGTTTGCAGTTAGT GCATGTATGTATTTTTTTACACTCAGGGACCCTGATCAAAGTTTTACATGAAGACTAACAAACGACCAATTTCAACAGTT CTATAAGGGGTTTTTGTTCTATATGAGCTCTTCTTTTTAACTCTATTGGAATTGGAAATAGCATTATCTTACGTTTTCAG TTTTGCAGGTTCAGGTATTCCTGCTTCTAAGATTGAGTCCTTGAGTTAATTGCAGTTTACCGTGGAATTTGTGTACAGGT TTCTGCGTATGCACTGGGAGGATATTTTATTGCATCTTTCAGGTATATTTTGGAGAGCTTCTTAAGCACTATCGGCTGGC AAGTAATCGTGTTAGGGTTTTCTCCTGATTGCAGGCTGAGGAAGATGGGCTAACTTTGTTATTTTTCCTTTGCTTATTAG GATGCTTTATTGATGTAAGTTTTAGATGTCTATTGTGGAGACTGGGATTTGAAATCTATACTTTTATGTCGTGCTTGTAA AATTGTTACTGAGGTTGTAGGCTTTTGTTTGAAAATTGATGTTATTCATGCTTTTAGATCATTCTCTCTATCCTCTGGAA TTAATTTTGAAACTAGGAAGCTACTTGGTGTGTGTTTGGTTTCAAATCTGGAGAGGCCAAACGCGGATTCAGAAATTTAA AAGCAACTATTTCTTGCTTTTGAAAACGTGGGTCCGGCCAAATGTATATCCTCAATGAGTTTTCCAAACATGCCCTTACA GTGTAGCTTCTCTATAGTTGATTCAGGCTTTATGAAGGAAAATATTTCATAAAGGATAACAACATTAATTGAGTTCTGTA GTTTTATCATATCAAATTATTGACCCGGTGGATGTAGTAGATTGAGAAGACAATTGTTACGAGCACCAACAAAACTAGAA GTGCTCCTTGGTTCAATGAGCGTAGGACGAGATATTCATATTTCTTTCTTATGGTCAGACACATTAAAAGCTAAGCAATA ATAATTTTTCTATGGTCAAATAGAGATGTTCCTACTTCATGCTACATGAAGAACATAAGATGAAGCAACGAAATATCTTG GGTTTAGAAGATAATAAAGTAAAGTGATTTGA
CDS sequence (LotjaGi3g1v0172600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGCACTTGGCATCAATCTTCGGCACAGAGAAAGACAGAGTGAATTGCCCATTCTACTTCAAGATCGGAGCATG CAGACATGGCGATCGCTGCTCCAGGCTCCACACCAAACCCAGCATCAGCCCCACCATTCTCCTCTCCAACATGTACCAAC GCCCTGACATGATCACTCCCGGCGTCGACGTTCACGGCCAACCCATCGACCCTCGCAGGATCCAGGACCACTTTGAAGAA TTCTATGAGGATTTGTTTGAAGAGTTGTCTAAGTATGGTGATATTGAAAGCCTCAATGTGTGTGATAACCTCGCTGATCA CATGGTTGGTAATGTGTACGTTCAGTTTAGAGAGGAAGAACATGCTGGTAATGCTGTTAGGAATCTCACTGGAAGGTTTT ATGCTGGTCGTCCAATTATTGTTGACTTCTCTCCGGTGACGGATTTTCGGGAGGCTACTTGCAGGCAGTATGAGGAGAAT ACTTGCAACCGTGGTGGTTATTGCAACTTCATGCACTTGAAAAGAATTAGCAGGGAATTGAGGCGCCAGTTGTTTGGGAA GTCTCATGGAAGGCACAGCAGGAGCCGGAGCAGGAGCCCATACAGGCATCGGAGCCATGAGGATCGGTCTCATCGCAGTC ATAGCAGTAAGTATGATGACAGAGACTATTATCGTGAGATTCGTAGCAGGAGACGCAAGAGCACAAGTCCTGAGCGTAGG AGGGGACGGAGTCGCAGTCGGGAAAGGAGGAATCGTACTCCAGTCAGGGATCCCAGTGAGGAGAGACGAGCCAGAATTGA GCAGTGGAACAGGGAGAGGGAAGAGCAAGGTTCTGCAAGTAAGGCTAATACTGAGCAAACCAACAATGGTGACAGTGGGC ACATGCAGAATTCTAGCACATATGATGGGCTTCAGCAACAAGAGCAGCAACAGCAACCTCCTCAGGAGGGATATTGA
Protein sequence (LotjaGi3g1v0172600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITPGVDVHGQPIDPRRIQDHFEE FYEDLFEELSKYGDIESLNVCDNLADHMVGNVYVQFREEEHAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEN TCNRGGYCNFMHLKRISRELRRQLFGKSHGRHSRSRSRSPYRHRSHEDRSHRSHSSKYDDRDYYREIRSRRRKSTSPERR RGRSRSRERRNRTPVRDPSEERRARIEQWNREREEQGSASKANTEQTNNGDSGHMQNSSTYDGLQQQEQQQQPPQEGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 7.6E-146 | – | |
| PANTHER | 1 | 298 | 298 | 7.6E-146 | ||
| ProSiteProfiles | 12 | 40 | 29 | 13.112 | ||
| SMART | 13 | 39 | 27 | 0.0065 | ||
| Pfam | 14 | 37 | 24 | 5.1E-7 | ||
| PRINTS | 18 | 37 | 20 | 2.1E-62 | ||
| SUPERFAMILY | 32 | 154 | 123 | 2.04E-17 | ||
| PRINTS | 37 | 57 | 21 | 2.1E-62 | ||
| Gene3D | 43 | 145 | 103 | 1.3E-30 | ||
| ProSiteProfiles | 44 | 146 | 103 | 11.264 | ||
| CDD | 44 | 145 | 102 | 4.88136E-65 | – | |
| SMART | 45 | 142 | 98 | 0.0047 | ||
| SMART | 61 | 142 | 82 | 6.4E-5 | ||
| PRINTS | 75 | 90 | 16 | 2.1E-62 | ||
| Pfam | 83 | 139 | 57 | 2.0E-6 | ||
| PRINTS | 103 | 125 | 23 | 2.1E-62 | ||
| PRINTS | 130 | 154 | 25 | 2.1E-62 | ||
| ProSiteProfiles | 148 | 175 | 28 | 11.122 | ||
| SMART | 148 | 174 | 27 | 0.13 | ||
| Pfam | 150 | 173 | 24 | 8.8E-5 | ||
| PRINTS | 165 | 177 | 13 | 2.1E-62 | ||
| MobiDBLite | 185 | 318 | 134 | - | – | |
| MobiDBLite | 201 | 233 | 33 | - | – | |
| MobiDBLite | 234 | 249 | 16 | - | – | |
| MobiDBLite | 250 | 279 | 30 | - | – | |
| MobiDBLite | 280 | 318 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Cellular component | U2AF | A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point. |
Expression pattern of LotjaGi3g1v0172600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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